Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.5e-101 372.9 188 100.0
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 2.8e-60 235.7 206 66.0
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 2.8e-60 235.7 206 66.0
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 2.4e-59 232.6 207 64.3
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-58 230.3 207 63.8
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 7.8e-58 227.6 208 64.4
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 9.5e-56 220.7 205 62.4
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.8e-54 216.5 205 61.5
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 3.4e-53 212.2 205 60.0
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 4.9e-52 208.4 204 59.3
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 3.2e-51 205.7 204 59.8
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 5.9e-50 201.4 204 56.4
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 6.6e-49 198.0 205 59.0
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 2.8e-47 192.6 185 63.8
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 8.0e-47 191.0 204 54.4
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 2.6e-45 186.0 204 53.9
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 4.4e-45 185.3 210 52.9
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 4.4e-45 185.3 210 52.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 5.8e-45 184.9 203 52.2
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.7e-44 183.3 203 51.7
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.2e-44 183.0 203 51.7
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.1e-43 180.6 212 51.9
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.1e-43 180.6 208 51.0
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.9e-43 179.9 201 50.7
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 5.4e-43 178.3 209 49.8
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 7.0e-43 177.9 207 50.7
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 9.2e-43 177.6 207 52.2
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 1.2e-42 177.2 212 50.0
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.6e-42 176.8 208 50.0
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 3.5e-42 175.6 216 47.2
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 4.6e-42 175.3 205 51.2
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 6.0e-42 174.9 211 49.8
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 7.8e-42 174.5 207 50.2
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.7e-41 173.3 205 49.8
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 6.6e-41 171.4 209 48.3
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 8.6e-41 171.0 206 49.5
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.1e-40 170.6 203 48.8
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.1e-40 170.6 206 49.0
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.5e-40 170.2 212 48.6
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 3.3e-40 169.1 207 48.8
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 1.2e-39 167.2 204 49.0
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.2e-39 167.2 211 46.4
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.1e-39 166.4 204 48.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.8e-39 166.0 206 49.0
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 3.6e-39 165.6 210 47.6
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.8e-38 163.3 202 48.5
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.8e-38 163.3 207 47.8
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.8e-38 163.3 210 45.7
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 3.1e-38 162.5 206 46.6
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 4.0e-38 162.2 210 47.1
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 5.2e-38 161.8 207 44.4
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 6.8e-38 161.4 206 46.1
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.5e-37 160.2 217 45.6
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 2.0e-37 159.8 212 46.7
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 2.0e-37 159.8 212 46.2
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.6e-37 159.5 208 43.8
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 3.4e-37 159.1 184 56.0
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 4.4e-37 158.7 210 46.7
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.4e-37 158.7 203 48.3
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 5.8e-37 158.3 213 45.1
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 7.5e-37 157.9 210 46.2
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 7.5e-37 157.9 211 47.4
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 9.9e-37 157.5 207 44.0
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.3e-36 157.1 212 46.2
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.3e-36 157.1 212 46.2
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.3e-36 157.1 212 46.2
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.3e-36 157.1 212 46.2
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.3e-36 157.1 208 45.7
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.9e-36 156.0 205 42.9
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.9e-36 156.0 205 43.4
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.9e-36 156.0 237 43.0
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 4.9e-36 155.2 216 46.8
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 6.4e-36 154.8 212 45.3
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.1e-35 154.1 213 44.1
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.4e-35 153.7 211 47.4
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.4e-35 153.7 211 47.4
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 4.1e-35 152.1 211 44.5
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.6e-34 150.2 209 42.6
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.6e-34 150.2 217 44.7
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.6e-34 150.2 206 45.1
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.6e-34 148.7 198 47.0
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.3e-33 147.1 211 44.5
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 1.3e-33 147.1 214 43.9
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 3.0e-33 146.0 236 39.8
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 3.9e-33 145.6 226 40.3
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 3.9e-33 145.6 213 43.2
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 6.6e-33 144.8 205 42.0
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 4.3e-32 142.1 211 44.1
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.3e-32 142.1 217 43.3
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 5.6e-32 141.7 217 43.3
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 7.3e-32 141.4 209 41.6
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.8e-31 139.4 212 42.9
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.5e-29 133.7 204 41.2
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 2.0e-29 133.3 211 40.8
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 7.6e-29 131.3 240 37.1
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 7.6e-29 131.3 240 37.1
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 9.9e-29 131.0 201 41.3
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.9e-28 129.4 241 36.5
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.4e-27 126.3 213 38.5
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.3e-25 119.8 191 45.0
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 6.6e-25 118.2 124 54.8
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.9e-24 116.7 152 46.7
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 3.3e-24 115.9 208 38.9
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 7.3e-24 114.8 168 41.1
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 1.6e-23 113.6 203 38.4
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.8e-23 112.8 210 36.2
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 8.1e-23 111.3 183 42.6
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.2e-21 107.5 113 53.1
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.5e-21 107.1 149 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 7.6e-21 104.8 213 31.9
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 1.3e-20 104.0 215 37.2
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 8.4e-20 101.3 226 33.2
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.5e-16 90.5 236 29.2
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.5e-16 89.7 67 71.6
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 2.8e-15 86.3 157 36.9
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.5e-13 79.0 76 52.6
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 2.2e-12 76.6 52 69.2
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.9e-12 76.3 71 56.3
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 6.4e-12 75.1 222 28.8
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 7.1e-11 71.6 39 84.6
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 7.1e-11 71.6 134 38.1
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.2e-10 70.9 109 47.7
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.0e-09 67.8 73 49.3
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 4.3e-08 62.4 42 69.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 4.8e-07 58.9 223 26.9


User provided reference genes

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