Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12290 Brassica carinata HOM05D005812 ORTHO05D007232 8.0e-129 463.8 235 100.0
A08p23250 Brassica napus HOM05D005812 ORTHO05D007232 3.1e-104 382.1 240 87.9
BraA08t34281Z Brassica rapa HOM05D005812 ORTHO05D007232 3.1e-104 382.1 240 87.9
BcaC01g00328 Brassica carinata HOM05D005812 ORTHO05D007232 1.5e-103 379.8 240 86.7
C03p78490 Brassica napus HOM05D005812 ORTHO05D007232 4.4e-103 378.3 240 86.7
BolC3t20101H Brassica oleracea HOM05D005812 ORTHO05D007232 1.7e-102 376.3 240 86.2
Sp7g35990 Schrenkiella parvula HOM05D005812 ORTHO05D007232 5.6e-98 361.3 246 80.9
Thhalv10026058m.g Eutrema salsugineum HOM05D005812 ORTHO05D007232 2.1e-97 359.4 250 79.2
Carub.0007s0184 Capsella rubella HOM05D005812 ORTHO05D007232 3.1e-96 355.5 240 81.2
AT4G39900 Arabidopsis thaliana HOM05D005812 ORTHO05D007232 2.6e-95 352.4 242 81.0
CARHR246800 Cardamine hirsuta HOM05D005812 ORTHO05D007232 1.9e-90 336.3 239 78.7
BcaNung00911 Brassica carinata HOM05D005812 ORTHO05D007232 1.6e-89 333.2 243 77.0
C01p00910 Brassica napus HOM05D005812 ORTHO05D007232 1.4e-88 330.1 242 76.4
BraA01t00082Z Brassica rapa HOM05D005812 ORTHO05D007232 6.9e-88 327.8 245 75.1
A01p00790 Brassica napus HOM05D005812 ORTHO05D007232 9.0e-88 327.4 244 76.2
BcaNung06391 Brassica carinata HOM05D005812 ORTHO05D007232 5.3e-80 301.6 248 71.0
THA.LOC104807691 Tarenaya hassleriana HOM05D005812 ORTHO05D007232 7.1e-77 291.2 250 66.4
AL7G12150 Arabidopsis lyrata HOM05D005812 ORTHO05D007232 6.3e-73 278.1 176 86.4
Atru.chr4.60 Acer truncatum HOM05D005812 ORTHO05D007232 6.9e-56 221.5 237 53.6
Aa31LG6G15360 Aethionema arabicum HOM05D000249 ORTHO05D000206 4.2e-53 212.2 157 72.6
Cpa.g.sc230.1 Carica papaya HOM05D005812 ORTHO05D007232 5.1e-51 205.3 243 49.0
Thecc.01G101100 Theobroma cacao HOM05D005812 ORTHO05D007232 8.8e-51 204.5 233 53.2
CARHR113520 Cardamine hirsuta HOM05D005812 ORTHO05D007232 1.1e-50 204.1 174 66.7
Ciclev10026269m.g Citrus clementina HOM05D005812 ORTHO05D007232 9.7e-50 201.1 277 46.2
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 1.7e-49 200.3 163 69.9
BcaNung00793 Brassica carinata HOM05D005812 ORTHO05D007232 9.1e-48 194.5 134 82.1
Duzib264G1072 Durio zibethinus HOM05D005812 ORTHO05D007232 1.2e-47 194.1 233 50.2
Gohir.D11G221400 Gossypium hirsutum HOM05D005812 ORTHO05D007232 2.0e-47 193.4 233 49.8
Gorai.007G238400 Gossypium raimondii HOM05D005812 ORTHO05D007232 2.0e-47 193.4 233 49.8
Duzib147G1550 Durio zibethinus HOM05D005812 ORTHO05D007232 2.9e-46 189.5 248 48.0
Gorai.011G113200 Gossypium raimondii HOM05D005812 ORTHO05D007232 9.4e-45 184.5 239 46.4
Duzib187G0152 Durio zibethinus HOM05D005812 ORTHO05D007232 4.7e-44 182.2 230 49.1
Gorai.008G090000 Gossypium raimondii HOM05D005812 ORTHO05D007232 8.0e-44 181.4 234 49.1
Cfa002656 Carpinus fangiana HOM05D005812 ORTHO05D007232 2.3e-43 179.9 264 46.6
Gohir.A10G085300 Gossypium hirsutum HOM05D005812 ORTHO05D007232 2.0e-42 176.8 239 45.2
Gohir.D10G103600 Gossypium hirsutum HOM05D005812 ORTHO05D007232 2.0e-42 176.8 239 45.2
Gohir.A12G083366 Gossypium hirsutum HOM05D005812 ORTHO05D007232 2.8e-41 172.9 218 47.7
CiPaw.04G099800 Carya illinoinensis HOM05D005812 ORTHO05D007232 4.1e-40 169.1 263 44.5
CiPaw.03G142200 Carya illinoinensis HOM05D005812 ORTHO05D007232 2.7e-39 166.4 244 44.7
Gohir.A11G201100 Gossypium hirsutum HOM05D005812 ORTHO05D007232 2.7e-39 166.4 283 41.0
QL06p049491 Quercus lobata HOM05D005812 ORTHO05D007232 7.7e-39 164.9 257 43.6
GSVIVG01002272001 Vitis vinifera HOM05D005812 ORTHO05D007232 3.8e-38 162.5 262 40.8
Potri.007G093200 Populus trichocarpa HOM05D005812 ORTHO05D007232 2.7e-36 156.4 254 41.7
PGR102G1433 Punica granatum HOM05D005812 ORTHO05D007232 2.0e-34 150.2 264 38.3
TAR628G0897 Trochodendron aralioides HOM05D005812 ORTHO05D007232 3.1e-32 142.9 248 38.7
Haze_24926 Corylus avellana HOM05D005812 ORTHO05D007232 9.1e-32 141.4 227 42.3
CANSAT01G0800 Cannabis sativa HOM05D005812 ORTHO05D007232 4.5e-31 139.0 238 41.2
Prupe.6G187400 Prunus persica HOM05D005812 ORTHO05D007232 5.9e-31 138.7 243 39.9
TPR.G17850 Trifolium pratense HOM05D005812 ORTHO05D007232 2.2e-30 136.7 232 39.7
Dinv21904 Davidia involucrata HOM05D005812 ORTHO05D007232 3.8e-30 136.0 176 48.3
Glyma.11G240400 Glycine max HOM05D005812 ORTHO05D007232 3.8e-30 136.0 239 41.4
Manes.12G134500 Manihot esculenta HOM05D005812 ORTHO05D007232 5.0e-30 135.6 229 38.9
MD15G1323600 Malus domestica HOM05D005812 ORTHO05D007232 1.1e-29 134.4 245 38.8
RcHm_v2.0_Chr2g0113441 Rosa chinensis HOM05D005812 ORTHO05D007232 1.5e-29 134.0 253 39.9
Lj6g0021205 Lotus japonicus HOM05D005812 ORTHO05D007232 2.5e-29 133.3 236 39.4
FvH4_1g20820 Fragaria vesca HOM05D005812 ORTHO05D007232 1.6e-28 130.6 257 38.9
Phvul.001G252300 Phaseolus vulgaris HOM05D005812 ORTHO05D007232 2.7e-28 129.8 239 39.7
Psat5g090240 Pisum sativum HOM05D005812 ORTHO05D007232 2.7e-28 129.8 244 38.1
Medtr3g087150 Medicago truncatula HOM05D005812 ORTHO05D007232 3.0e-27 126.3 240 37.5
VMungo1383G2465 Vigna mungo HOM05D005812 ORTHO05D007232 3.0e-27 126.3 237 38.4
Actinidia06567 Actinidia chinensis HOM05D005812 ORTHO05D007232 5.2e-27 125.6 195 41.5
ClCG10G008980 Citrullus lanatus HOM05D005812 ORTHO05D007232 1.5e-26 124.0 209 41.6
Eucgr.H04782 Eucalyptus grandis HOM05D005812 ORTHO05D007232 2.6e-26 123.2 269 34.9
Actinidia20016 Actinidia chinensis HOM05D005812 ORTHO05D007232 4.4e-26 122.5 188 41.0
arahy.Tifrunner.gnm1.ann1.LSP3Z9 Arachis hypogaea HOM05D005812 ORTHO05D007232 7.5e-26 121.7 226 40.3
arahy.Tifrunner.gnm1.ann1.I4SKYX Arachis hypogaea HOM05D005812 ORTHO05D007232 9.8e-26 121.3 226 39.8
Sed0017830 Sechium edule HOM05D005812 ORTHO05D007232 1.7e-25 120.6 213 40.8
Ca_16522_v3 Cicer arietinum L. HOM05D005812 ORTHO05D007232 2.2e-25 120.2 185 40.5
Glyma.18G016900 Glycine max HOM05D005812 ORTHO05D007232 2.2e-25 120.2 245 37.6
Manes.13G075600 Manihot esculenta HOM05D005812 ORTHO05D007232 6.3e-25 118.6 230 38.3
Lalb_Chr23g0277481 Lupinus albus HOM05D005812 ORTHO05D007232 2.7e-23 113.2 193 40.9
Dinv13192 Davidia involucrata HOM05D005812 ORTHO05D007232 3.8e-22 109.4 164 40.2
Lsat_1_v5_gn_4_141220 Lactuca sativa HOM05D005812 ORTHO05D007232 3.8e-22 109.4 189 40.2
Actinidia28235 Actinidia chinensis HOM05D005812 ORTHO05D007232 5.0e-22 109.0 188 40.4
EL10Ac6g15110 Beta vulgaris HOM05D005812 ORTHO05D007232 1.5e-21 107.5 167 40.7
Nn5g30114 Nelumbo nucifera HOM05D005812 ORTHO05D007232 3.3e-21 106.3 189 39.7
Gohir.D12G083200 Gossypium hirsutum HOM05D005812 ORTHO05D007232 1.6e-20 104.0 186 38.2
BcaB02g08758 Brassica carinata HOM05D005812 ORTHO05D007232 6.1e-20 102.1 105 61.9
MSTRG.3778 Avicennia marina HOM05D005812 ORTHO05D007232 8.0e-20 101.7 187 38.5
Rhsim08G0010800 Rhododendron simsii HOM05D005812 ORTHO05D007232 8.0e-20 101.7 192 38.5
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 1.4e-19 100.9 188 37.8
Peaxi162Scf00212g00413 Petunia axillaris HOM05D005812 ORTHO05D007232 1.4e-19 100.9 196 36.7
Oeu051807.1 Olea europaea HOM05D005812 ORTHO05D007232 3.0e-19 99.8 157 37.6
Hma1.2p1_1428F.1_g282935 Hydrangea macrophylla HOM05D005812 ORTHO05D007232 1.2e-18 97.8 198 37.9
AUR62002005 Chenopodium quinoa HOM05D005812 ORTHO05D007232 1.5e-18 97.4 186 37.1
ECA232G1467 Erigeron canadensis HOM05D005812 ORTHO05D007232 5.7e-18 95.5 187 37.4
DCAR_014222 Daucus carota HOM05D005812 ORTHO05D007232 7.5e-18 95.1 192 35.4
MBI02_g31269_MAGBIO Magnolia biondii HOM05D005812 ORTHO05D007232 7.5e-18 95.1 228 33.3
Hund16289 Selenicereus undatus HOM05D005812 ORTHO05D007232 9.8e-18 94.7 193 37.3
vmacro18598 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 1.3e-17 94.4 195 40.5
Cc07_g15160 Coffea canephora HOM05D005812 ORTHO05D007232 3.7e-17 92.8 159 41.5
Nitab4.5_0000083g0250 Nicotiana tabacum HOM05D005812 ORTHO05D007232 4.9e-17 92.4 196 34.7
Solyc04g055250.4 Solanum lycopersicum HOM05D005812 ORTHO05D007232 6.4e-17 92.0 186 34.4
Aqoxy6G00789 Aquilegia oxysepala HOM05D005812 ORTHO05D007232 1.4e-16 90.9 194 36.1
Sopen04g025100 Solanum pennellii HOM05D005812 ORTHO05D007232 1.4e-16 90.9 186 33.9
PSO781G0022 Papaver somniferum HOM05D005812 ORTHO05D007232 2.4e-16 90.1 242 31.4
AUR62003797 Chenopodium quinoa HOM05D005812 ORTHO05D007232 3.2e-16 89.7 184 34.2
MSTRG.2569 Avicennia marina HOM05D005812 ORTHO05D007232 4.1e-16 89.4 181 34.3
Nitab4.5_0004651g0010 Nicotiana tabacum HOM05D005812 ORTHO05D007232 9.2e-16 88.2 196 34.2
Oeu001791.1 Olea europaea HOM05D005812 ORTHO05D007232 3.5e-15 86.3 133 37.6
HanXRQChr10g0305381 Helianthus annuus HOM05D005812 ORTHO05D007232 4.6e-15 85.9 178 35.4
Sc03g0002070 Simmondsia chinensis HOM05D005812 ORTHO05D007232 4.6e-15 85.9 172 35.5
CsaV3_4G008880 Cucumis sativus L. HOM05D005812 ORTHO05D007232 5.9e-15 85.5 147 42.2
PSO541G0090 Papaver somniferum HOM05D005812 ORTHO05D007232 5.9e-15 85.5 262 30.9
MSTRG.23345 Avicennia marina HOM05D005812 ORTHO05D007232 6.6e-14 82.0 141 33.3
Migut.L00124 Erythranthe guttata HOM05D005812 ORTHO05D007232 1.9e-13 80.5 188 35.1
Sabra07G0077200 Salix brachista HOM05D005812 ORTHO05D007232 2.5e-13 80.1 139 36.0
DCAR_010089 Daucus carota HOM05D005812 ORTHO05D007232 3.3e-13 79.7 171 34.5
HanXRQChr05g0145211 Helianthus annuus HOM05D005812 ORTHO05D007232 4.3e-13 79.3 178 32.0
ECA232G0795 Erigeron canadensis HOM05D005812 ORTHO05D007232 9.5e-13 78.2 188 33.0
MSTRG.15713 Avicennia marina HOM05D005812 ORTHO05D007232 1.2e-12 77.8 181 35.9
CAN.G18.15 Capsicum annuum HOM05D005812 ORTHO05D007232 1.2e-12 77.8 150 34.7
CAN.G18.16 Capsicum annuum HOM05D005812 ORTHO05D007232 1.2e-12 77.8 150 34.7
Peaxi162Scf00611g00015 Petunia axillaris HOM05D005812 ORTHO05D007232 3.6e-12 76.3 139 36.0
Ah.02g122540 Amaranthus hybridus HOM05D005812 ORTHO05D007232 6.2e-12 75.5 184 32.6
HanXRQChr09g0254761 Helianthus annuus HOM05D005812 ORTHO05D007232 6.2e-12 75.5 199 34.2
MELO3C018959.2 Cucumis melo HOM05D005812 ORTHO05D007232 1.0e-11 74.7 100 49.0
Nitab4.5_0000897g0060 Nicotiana tabacum HOM05D005812 ORTHO05D007232 1.0e-11 74.7 181 31.5
SalBow5G0456 Salvia bowleyana HOM05D005812 ORTHO05D007232 1.4e-11 74.3 213 29.6
TWI74G1407 Tripterygium wilfordii HOM05D005812 ORTHO05D007232 2.3e-11 73.6 164 34.1
vmacro12958 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 1.5e-10 70.9 163 31.9
unitig_32.g11811 Utricularia gibba HOM05D005812 ORTHO05D007232 3.4e-10 69.7 171 31.6
PGSC0003DMG400001876 Solanum tuberosum HOM05D005812 ORTHO05D007232 9.8e-10 68.2 189 29.6
Lj2C549G6 Lonicera japonica HOM05D005812 ORTHO05D007232 3.7e-09 66.2 105 37.1
unitig_88.g27721 Utricularia gibba HOM05D005812 ORTHO05D007232 3.7e-09 66.2 48 68.8
SalBow5G2541 Salvia bowleyana HOM05D005812 ORTHO05D007232 9.2e-08 61.6 146 33.6
Ah.03g143620 Amaranthus hybridus HOM05D005812 ORTHO05D007232 4.6e-07 59.3 165 30.3
Rhsim10G0163100 Rhododendron simsii HOM05D001481 ORTHO05D001865 7.8e-07 58.5 78 41.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.3e-06 57.0 99 37.4


User provided reference genes

Program Settings