Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 0.0e+00 1153.7 647 100.0
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 4.4e-286 987.6 650 86.6
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 1.8e-284 982.2 654 85.9
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 1.2e-283 979.5 653 85.6
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-275 953.0 676 82.4
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 2.7e-275 951.8 654 84.1
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 3.3e-265 918.3 665 80.0
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 9.6e-257 890.2 656 78.0
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.7e-245 852.8 662 75.1
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.4e-239 833.2 662 74.0
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 3.0e-234 815.5 661 73.7
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 7.6e-230 800.8 659 71.8
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 6.9e-215 751.1 663 68.8
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 9.4e-204 714.1 663 63.7
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.2e-142 511.1 661 51.3
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.3e-141 506.9 665 51.3
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 6.6e-141 505.4 686 50.6
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.9e-140 503.8 658 50.3
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.6e-139 500.7 696 48.7
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.6e-139 499.6 698 48.9
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.8e-137 492.3 664 50.3
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 6.4e-136 488.8 664 50.0
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 7.1e-135 485.3 693 49.9
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 3.3e-132 476.5 655 48.7
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 4.3e-132 476.1 659 49.3
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.6e-131 474.2 666 48.0
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 5.3e-130 469.2 583 52.0
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 2.9e-128 463.4 694 46.0
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 1.9e-124 450.7 729 45.1
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.8e-123 446.8 707 44.8
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 6.2e-123 445.7 652 47.1
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 6.2e-123 445.7 684 45.0
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.4e-122 444.5 683 45.5
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 2.4e-122 443.7 454 58.6
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.4e-122 443.7 672 46.9
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 6.9e-122 442.2 670 46.6
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 2.0e-121 440.7 683 46.6
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 2.6e-121 440.3 665 46.3
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.3e-120 438.0 676 44.5
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.3e-120 438.0 673 46.4
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 6.4e-120 435.6 673 46.8
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.2e-119 433.3 699 44.2
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.3e-117 427.9 599 47.2
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.8e-117 427.6 666 44.4
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.1e-115 420.6 701 43.8
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 6.2e-115 419.1 376 62.8
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 8.2e-115 418.7 669 43.6
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-114 418.3 338 66.9
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.1e-114 418.3 670 44.3
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.8e-114 417.5 690 43.5
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 6.9e-114 415.6 675 45.5
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.0e-114 415.2 692 43.9
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.0e-112 411.8 741 41.7
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.0e-112 411.8 686 44.5
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 8.4e-112 408.7 673 45.2
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.1e-111 408.3 641 44.8
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.1e-111 408.3 684 43.3
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.9e-111 407.5 692 42.9
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.9e-111 407.5 687 44.4
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.5e-111 407.1 703 42.7
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.2e-110 404.8 688 43.2
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.1e-110 402.5 338 65.7
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 7.9e-110 402.1 695 41.9
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 2.3e-109 400.6 672 43.3
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 3.0e-109 400.2 593 46.4
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 3.0e-109 400.2 559 46.9
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 3.9e-109 399.8 679 43.6
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 3.9e-109 399.8 675 43.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 5.1e-109 399.4 671 43.8
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 2.8e-107 393.7 679 42.4
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 6.9e-106 389.0 666 42.9
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 2.6e-105 387.1 593 45.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.0e-104 385.2 609 43.7
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.7e-104 384.4 631 44.5
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 3.8e-104 383.3 661 42.2
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 3.8e-104 383.3 669 42.5
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.1e-103 381.7 614 43.6
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.1e-102 377.5 671 41.7
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 2.1e-102 377.5 380 58.4
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 2.7e-102 377.1 677 42.4
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 7.9e-102 375.6 605 44.0
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 2.3e-101 374.0 676 42.3
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 9.7e-100 368.6 674 40.5
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.3e-99 368.2 659 41.7
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 2.8e-99 367.1 701 40.4
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.4e-98 364.8 677 41.4
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.5e-97 361.3 576 45.1
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.5e-97 361.3 576 45.1
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.9e-95 354.4 605 42.0
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.9e-95 354.4 355 57.7
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.5e-95 354.0 685 40.1
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.5e-95 354.0 355 57.7
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.0e-93 348.6 559 45.8
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.0e-93 348.6 625 41.8
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 3.0e-93 347.1 594 43.3
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 6.7e-93 345.9 597 41.7
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 8.5e-88 328.9 668 38.8
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.0e-85 320.5 436 46.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 3.7e-83 313.5 520 44.0
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 3.8e-80 303.5 655 38.2
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 5.0e-80 303.1 659 37.5
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.8e-74 284.6 539 40.8
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 4.5e-73 280.0 686 35.9
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 3.0e-69 267.3 271 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 3.2e-58 230.7 315 43.5
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 3.9e-56 223.8 225 62.2
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.0e-53 215.7 370 41.4
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.4e-52 210.7 330 44.2
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 6.4e-51 206.5 217 55.3
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 3.0e-48 197.6 193 59.6
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.1e-47 195.7 547 32.9
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.1e-45 187.6 451 30.8
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.7e-43 181.8 512 32.6
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 1.4e-42 178.7 111 83.8
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 2.4e-42 177.9 124 71.0
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 3.5e-41 174.1 112 83.0
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.5e-39 166.0 417 36.2
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.6e-38 165.2 537 29.8
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 5.8e-36 156.8 113 73.5
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 7.6e-36 156.4 112 69.6
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.2e-34 151.0 118 63.6
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 5.4e-34 150.2 118 64.4
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 5.1e-32 143.7 90 82.2
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 6.4e-27 126.7 88 72.7
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.5e-25 120.9 400 31.2
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.0e-24 117.9 215 36.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.5e-23 114.8 107 54.2
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 7.3e-23 113.2 344 28.5
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 2.1e-22 111.7 141 47.5
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 3.6e-22 110.9 402 31.8
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 4.8e-22 110.5 87 66.7
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 9.0e-21 106.3 93 63.4
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-20 105.9 141 46.1
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-20 105.9 140 46.4
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 1.8e-13 82.0 60 81.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 4.3e-07 60.8 313 27.5


User provided reference genes

Program Settings