Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.5e-288 995.7 558 100.0
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.1e-218 762.7 570 80.9
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-217 760.4 565 80.9
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 9.2e-214 747.3 575 80.2
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 3.9e-212 741.9 565 79.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.1e-209 733.8 570 78.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 7.9e-173 611.3 524 71.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.8e-172 610.1 526 72.2
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.8e-170 602.8 530 71.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-166 590.1 515 75.0
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 7.9e-165 584.7 512 75.0
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.9e-158 563.5 562 63.7
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.2e-158 562.4 562 64.9
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 9.1e-153 544.7 562 63.7
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 4.5e-152 542.3 570 62.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.7e-151 540.4 590 60.7
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.0e-148 531.2 589 60.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 3.5e-144 516.2 561 58.1
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 6.5e-143 511.9 482 63.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.2e-140 502.3 575 61.2
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.2e-131 474.6 577 55.3
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 5.7e-123 445.7 430 62.6
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.4e-99 366.3 507 51.3
Sp5g17020 Schrenkiella parvula HOM05D003739 ORTHO05D003996 5.6e-94 349.4 342 62.3
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.3e-92 344.0 256 73.8
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-88 331.3 233 78.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.5e-75 288.1 595 41.0
BcaNung02354 Brassica carinata HOM05D003739 ORTHO05D003996 3.3e-54 217.2 321 53.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.1e-44 183.7 308 43.5
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 9.1e-36 156.0 268 38.8
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.5e-35 153.7 278 39.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 7.7e-35 152.9 273 38.1
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.0e-34 152.5 268 39.6
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.3e-34 152.1 265 38.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.2e-34 151.4 268 39.2
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 2.9e-34 151.0 212 43.9
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 3.8e-34 150.6 268 39.2
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 3.8e-34 150.6 208 41.8
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 3.6e-32 144.1 234 41.0
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.1e-32 143.3 246 37.8
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.8e-31 141.7 270 37.8
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.8e-31 141.7 268 39.6
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.8e-31 141.7 252 39.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.3e-31 141.4 266 37.2
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.3e-31 141.4 271 36.5
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.9e-31 140.6 266 37.6
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.2e-31 140.2 213 41.3
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.6e-30 137.9 271 36.5
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 3.3e-30 137.5 286 38.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 4.4e-30 137.1 209 40.7
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 4.4e-30 137.1 228 38.6
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 5.7e-30 136.7 273 35.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.7e-30 136.7 274 37.6
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 7.4e-30 136.3 272 36.8
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.7e-29 134.0 267 36.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 6.3e-29 133.3 268 35.8
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 6.3e-29 133.3 273 36.3
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 6.3e-29 133.3 235 38.3
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 8.2e-29 132.9 229 38.4
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.1e-28 131.0 265 36.2
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.1e-28 130.6 271 35.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 5.3e-28 130.2 164 45.7
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 5.3e-28 130.2 225 40.9
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 9.1e-28 129.4 205 37.6
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 9.1e-28 129.4 272 37.1
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 9.1e-28 129.4 271 35.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.0e-27 128.3 250 36.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.0e-27 128.3 216 38.4
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 2.6e-27 127.9 183 40.4
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.5e-27 127.5 267 36.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.0e-26 125.9 220 37.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.0e-26 125.9 262 37.0
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.3e-26 125.6 264 35.6
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.0e-26 123.6 264 35.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 5.0e-26 123.6 271 36.2
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.5e-26 123.2 273 34.1
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 6.5e-26 123.2 264 33.7
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 8.5e-26 122.9 123 50.4
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 8.5e-26 122.9 208 39.4
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-25 122.5 270 35.2
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.5e-25 122.1 460 29.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.9e-25 121.7 293 32.4
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.2e-25 120.6 277 35.0
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 5.5e-25 120.2 181 40.3
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 7.2e-25 119.8 233 36.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 2.1e-24 118.2 268 32.5
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-24 118.2 276 34.4
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.7e-24 117.9 271 34.3
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.6e-24 117.5 264 34.1
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 8.0e-24 116.3 231 35.5
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.8e-23 115.2 499 27.5
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.3e-23 114.8 197 34.5
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.0e-23 114.4 270 34.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 4.0e-23 114.0 394 31.0
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 4.0e-23 114.0 266 32.3
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.5e-22 112.1 408 30.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.0e-22 111.7 222 34.7
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.3e-22 110.9 385 30.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 9.7e-22 109.4 199 36.2
CARHR106830 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.3e-21 109.0 106 60.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.3e-21 109.0 271 30.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.7e-21 108.6 280 33.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.8e-21 107.8 448 27.7
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 8.2e-21 106.3 62 82.3
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.4e-20 105.5 541 27.4
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.4e-20 104.8 386 29.8
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 5.3e-20 103.6 394 31.5
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 9.1e-20 102.8 304 29.6
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 9.1e-20 102.8 102 47.1
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.6e-19 102.1 283 31.8
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.6e-19 102.1 173 41.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.6e-19 102.1 234 32.1
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.0e-19 101.7 282 33.3
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.0e-18 99.4 254 29.9
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.0e-18 99.4 258 37.6
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 3.8e-18 97.4 268 32.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.2e-17 94.0 269 32.0
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 5.5e-17 93.6 232 31.9
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 8.0e-16 89.7 403 31.5
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.8e-15 88.6 264 27.3
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 2.3e-15 88.2 159 33.3
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 6.8e-15 86.7 160 38.1
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.5e-14 85.5 264 31.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.6e-14 84.7 270 31.9
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.6e-14 84.7 159 39.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 4.4e-14 84.0 137 38.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.5e-14 83.2 180 35.0
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.7e-13 80.9 205 30.2
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 4.8e-13 80.5 263 29.3
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.3e-13 80.1 165 33.3
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 8.3e-13 79.7 100 40.0
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-12 78.6 260 32.3
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 1.8e-12 78.6 336 26.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 4.1e-12 77.4 219 32.4
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 9.1e-12 76.3 141 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 9.1e-12 76.3 141 35.5
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.2e-11 75.9 482 25.5
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.5e-11 74.3 258 30.2
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 7.7e-11 73.2 110 37.3
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 7.7e-11 73.2 110 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-10 72.0 259 27.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.7e-10 72.0 120 37.5
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 5.5e-09 67.0 54 63.0
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.2e-09 66.6 73 56.2
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 7.2e-09 66.6 106 32.1
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.2e-07 60.5 162 34.6
Sp7g36660 Schrenkiella parvula HOM05D003739 ORTHO05D003996 2.6e-06 58.2 52 67.3


User provided reference genes

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