Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1517.7 802 100.0
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1358.2 809 89.1
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1357.0 809 89.0
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1345.5 810 89.0
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1344.7 810 88.6
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 0.0e+00 1231.9 833 80.6
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1209.9 821 80.0
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1209.1 821 80.0
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1205.7 821 79.7
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 0.0e+00 1203.7 834 80.2
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 0.0e+00 1192.9 826 78.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1191.8 828 79.2
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1187.2 827 78.5
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 0.0e+00 1159.1 834 76.9
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 0.0e+00 1147.9 837 76.0
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 0.0e+00 1135.9 850 74.6
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 0.0e+00 1104.0 827 74.4
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.6e-301 1039.3 595 92.1
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 5.5e-262 907.9 842 61.9
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 2.6e-251 872.5 838 62.1
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.4e-187 659.1 865 46.8
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 7.8e-184 648.3 787 48.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.6e-176 622.5 830 46.6
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 4.6e-176 622.5 853 46.2
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.3e-175 620.9 830 46.6
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.9e-175 619.4 780 47.2
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.9e-175 619.4 690 51.3
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 5.1e-175 619.0 812 46.9
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 6.7e-175 618.6 683 52.0
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.9e-174 617.1 702 50.0
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.4e-171 606.3 691 50.2
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 5.8e-171 605.5 648 52.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-169 601.3 837 44.4
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.9e-169 600.5 730 49.3
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 9.3e-169 598.2 820 47.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.3e-167 594.3 676 50.3
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 3.0e-167 593.2 730 48.8
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 6.7e-167 592.0 650 52.0
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 5.7e-166 589.0 910 42.2
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.1e-164 584.7 675 50.4
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 6.9e-164 582.0 784 44.8
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 2.6e-163 580.1 732 47.7
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.9e-162 575.9 716 47.3
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 4.2e-161 572.8 771 45.1
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 7.1e-161 572.0 650 50.5
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.6e-160 570.9 646 49.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 2.7e-160 570.1 825 44.8
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 2.7e-160 570.1 834 43.3
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 4.6e-160 569.3 653 50.8
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 4.6e-160 569.3 646 49.4
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.9e-160 568.5 646 49.4
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.8e-156 557.4 739 46.7
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 4.1e-156 556.2 651 48.5
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 5.3e-156 555.8 667 48.3
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 9.0e-156 555.1 649 48.7
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 2.6e-155 553.5 675 49.0
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.3e-154 551.2 633 48.5
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.7e-154 550.8 640 50.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 6.5e-154 548.9 655 50.1
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 8.5e-154 548.5 652 48.6
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.1e-153 548.1 660 49.2
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.6e-152 544.3 670 48.5
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.0e-151 541.6 764 44.5
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.4e-151 541.2 708 47.0
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.8e-151 540.8 642 49.2
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.8e-151 540.8 821 42.9
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 3.9e-151 539.7 671 48.7
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.9e-151 539.7 667 45.4
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 3.9e-151 539.7 664 47.0
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.1e-151 539.3 648 47.8
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.5e-150 537.7 652 46.2
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.0e-150 537.3 712 46.6
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 2.5e-150 537.0 794 41.7
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.5e-150 537.0 655 46.0
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.5e-150 537.0 794 43.2
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.8e-149 533.5 653 49.9
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.7e-149 533.1 805 42.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.3e-149 532.3 653 48.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.2e-147 528.1 716 44.7
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.0e-146 522.7 646 46.6
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.2e-145 520.0 756 43.5
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 5.5e-145 519.2 655 46.4
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.0e-143 515.0 741 43.5
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.8e-143 514.2 774 42.0
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.9e-143 513.1 622 49.0
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 6.7e-143 512.3 672 45.8
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 5.7e-142 509.2 704 44.3
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.7e-141 507.7 871 40.2
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 2.4e-140 503.8 685 43.1
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 4.5e-139 499.6 672 47.0
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.9e-139 499.2 586 49.1
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 5.0e-138 496.1 658 46.7
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 2.5e-137 493.8 829 41.1
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 4.7e-136 489.6 741 42.0
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.3e-133 481.5 683 42.8
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.3e-132 476.1 539 50.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.6e-131 474.6 647 45.9
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.6e-131 473.8 673 43.5
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 4.5e-131 473.0 810 39.4
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 5.0e-130 469.5 673 44.6
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.8e-127 461.1 874 37.6
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.6e-126 457.2 672 41.7
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.2e-117 427.6 881 35.1
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.8e-117 427.2 676 40.1
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 6.1e-112 409.5 648 40.0
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.4e-111 408.3 654 40.8
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.0e-111 407.1 654 41.1
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 3.7e-109 400.2 524 44.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.8e-103 381.3 677 37.5
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-103 380.2 630 40.0
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-103 380.2 630 40.0
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.4e-92 344.4 445 46.5
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.1e-91 341.3 535 45.0
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.6e-91 340.1 549 41.2
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.3e-90 337.8 691 35.5
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.5e-89 335.1 355 51.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 2.5e-89 334.3 582 38.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.6e-88 331.6 427 47.8
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 8.9e-87 325.9 700 37.3
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.5e-81 307.8 524 39.1
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 4.0e-79 300.4 426 43.4
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.2e-78 298.9 658 34.2
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.2e-78 298.9 658 34.2
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.0e-78 298.1 412 43.9
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 3.8e-77 293.9 698 33.4
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 7.1e-76 289.7 338 48.8
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.1e-73 282.3 790 30.3
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.4e-70 270.8 790 30.1
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.8e-69 267.3 277 50.2
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.1e-63 249.2 273 52.4
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 1.1e-57 229.2 146 84.2
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.7e-56 224.2 430 39.1
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.8e-54 216.9 225 51.6
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.1e-49 202.6 278 47.8
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-48 198.7 111 87.4
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 2.8e-48 198.0 111 86.5
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 9.0e-47 193.0 377 35.8
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.0e-46 191.8 123 79.7
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.3e-45 189.1 334 37.7
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.0e-42 177.9 591 29.3
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.2e-40 171.8 195 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.9e-39 166.8 335 37.6
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.2e-36 157.9 215 47.4
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.2e-35 156.0 141 55.3
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 7.9e-35 153.3 82 87.8
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.8e-34 152.1 142 53.5
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 2.3e-34 151.8 87 88.5
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-33 149.4 82 86.6
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-33 149.4 82 86.6
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.5e-33 148.3 156 50.6
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 7.4e-33 146.7 82 85.4
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 2.9e-29 134.8 72 90.3
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 5.0e-29 134.0 119 56.3
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 6.5e-29 133.7 72 88.9
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.4e-28 132.5 181 42.0
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.1e-27 128.6 260 38.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.7e-27 128.3 282 35.1
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 4.7e-27 127.5 141 50.4
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.4e-26 125.9 296 37.2
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.1e-25 122.9 233 38.2
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.1e-25 122.9 239 34.3
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.1e-25 122.9 203 41.4
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 3.3e-25 121.3 123 52.8
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 1.3e-24 119.4 133 50.4
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.8e-23 115.5 219 37.4
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 4.1e-23 114.4 116 47.4
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 7.2e-20 103.6 135 45.9
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.4e-15 88.6 80 62.5
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.1e-15 86.7 181 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.7e-14 85.1 129 36.4
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.7e-13 82.4 79 58.2
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 5.0e-13 80.9 171 39.2
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 1.5e-12 79.3 92 50.0
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 4.2e-12 77.8 92 50.0
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 4.7e-11 74.3 126 42.9
BcaB08g34815 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-10 72.4 44 75.0
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 3.0e-10 71.6 62 59.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.0e-10 71.6 62 58.1
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.2e-09 69.7 83 47.0
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.2e-09 69.7 73 47.9
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 2.2e-08 65.5 110 44.5
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 1.8e-07 62.4 138 36.2
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 5.9e-06 57.4 241 29.9


User provided reference genes

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