Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 3.0e-233 811.6 442 100.0
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 9.2e-219 763.5 442 89.4
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 3.9e-217 758.1 442 91.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-216 756.5 442 90.7
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.5e-216 756.1 442 90.5
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 3.1e-214 748.4 469 83.2
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 1.0e-209 733.4 444 84.7
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 7.3e-208 727.2 444 86.0
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 7.8e-202 707.2 442 85.1
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.3e-199 699.9 376 90.7
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.8e-199 698.7 376 90.4
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 4.8e-199 698.0 445 85.2
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 4.5e-197 691.4 376 90.2
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 2.2e-196 689.1 442 83.9
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.0e-193 680.2 382 85.6
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 3.1e-190 668.7 382 83.8
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 5.8e-189 664.5 382 84.3
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 2.9e-188 662.1 420 77.6
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.8e-169 599.7 442 68.8
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.1e-158 563.9 373 72.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.5e-152 543.5 358 71.2
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.3e-143 511.1 385 64.4
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 6.5e-140 501.5 385 63.4
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.5e-140 501.1 385 63.1
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 5.2e-137 491.9 386 61.7
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.8e-134 483.4 377 62.3
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.1e-134 482.6 371 61.7
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 3.1e-134 482.6 374 62.8
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 7.0e-134 481.5 383 61.1
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 9.1e-134 481.1 371 61.7
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.5e-133 478.8 371 61.7
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 5.9e-133 478.4 384 60.2
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.3e-132 476.5 382 59.7
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.3e-132 476.5 371 61.5
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 5.0e-132 475.3 383 60.6
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.6e-132 474.9 384 60.2
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.5e-131 473.8 385 60.0
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.5e-131 473.0 383 59.3
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 5.5e-131 471.9 383 59.8
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 7.2e-131 471.5 387 60.7
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.2e-130 470.7 364 61.3
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 3.6e-130 469.2 364 61.8
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 4.7e-130 468.8 373 61.7
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 8.0e-130 468.0 357 62.2
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.0e-129 467.6 363 61.2
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.0e-129 467.6 363 61.4
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.4e-129 467.2 361 61.2
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.4e-129 467.2 363 60.9
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 3.0e-129 466.1 357 62.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 3.0e-129 466.1 363 61.7
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.0e-129 465.7 382 61.3
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 6.8e-129 464.9 385 59.5
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 8.9e-129 464.5 362 61.6
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 8.9e-129 464.5 363 61.2
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.2e-128 464.2 369 60.2
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.2e-128 464.2 372 61.0
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.5e-128 463.8 385 59.2
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 2.6e-128 463.0 378 58.5
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 4.4e-128 462.2 366 60.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.8e-128 461.1 360 62.8
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.7e-127 460.3 382 59.4
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 2.2e-127 459.9 359 62.1
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.2e-127 459.9 376 60.6
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.2e-127 459.9 382 58.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.8e-127 459.5 393 57.0
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 4.9e-127 458.8 376 59.3
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.1e-126 457.6 364 60.4
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.4e-126 457.2 374 59.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.4e-126 457.2 356 61.2
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.4e-126 456.4 373 59.5
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.1e-126 455.7 372 60.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 2.7e-125 453.0 341 63.6
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 3.5e-125 452.6 368 61.4
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 5.9e-125 451.8 379 58.0
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 7.8e-125 451.4 375 59.2
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 1.3e-124 450.7 359 60.2
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.3e-124 449.9 378 57.9
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.3e-124 449.9 366 59.8
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 2.9e-124 449.5 356 61.5
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 3.9e-124 449.1 360 62.2
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.6e-124 448.4 397 56.9
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.6e-124 448.4 397 56.9
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 8.6e-124 448.0 346 61.6
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 8.6e-124 448.0 369 58.8
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.9e-123 446.8 359 58.5
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 4.3e-123 445.7 340 61.5
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.6e-123 445.3 362 59.4
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 9.5e-123 444.5 356 61.5
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.6e-122 442.6 341 62.2
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 4.7e-122 442.2 377 58.4
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 6.1e-122 441.8 361 60.7
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 8.0e-122 441.4 361 60.4
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.0e-121 441.0 385 57.1
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.0e-121 441.0 377 58.4
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.8e-121 440.3 374 57.2
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.3e-121 439.9 361 59.8
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 4.0e-121 439.1 361 59.0
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 5.2e-121 438.7 360 60.3
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 1.2e-120 437.6 375 57.9
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.0e-120 436.8 361 59.3
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 4.4e-120 435.6 360 60.6
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 2.9e-119 433.0 383 55.6
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.1e-118 431.0 360 57.8
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 4.1e-118 429.1 337 61.4
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 4.6e-117 425.6 356 61.2
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 4.6e-117 425.6 322 62.7
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 6.0e-117 425.2 360 58.6
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 6.8e-113 411.8 399 51.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.9e-111 406.4 387 54.0
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.4e-110 403.3 370 55.7
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.0e-108 397.9 417 50.1
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.5e-107 391.3 364 53.8
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.2e-106 391.0 371 52.0
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.5e-104 384.0 308 61.4
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.7e-103 380.6 365 51.8
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.7e-103 380.6 382 51.3
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 6.0e-101 372.1 292 59.6
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.0e-100 371.3 379 47.0
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.3e-100 370.2 345 54.2
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 3.3e-99 366.3 292 62.0
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 2.4e-97 360.1 295 60.0
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.0e-96 357.1 383 49.9
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.4e-94 350.9 376 48.7
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 2.4e-94 350.1 274 60.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.9e-91 340.5 323 51.7
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.4e-86 324.3 294 53.4
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 3.1e-81 306.6 391 42.5
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 6.9e-81 305.4 358 45.8
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 9.0e-81 305.1 379 45.1
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 1.3e-79 301.2 379 44.9
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-76 291.2 292 51.7
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 7.4e-75 285.4 296 50.0
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.4e-65 253.8 341 44.0
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 7.6e-64 248.8 201 59.2
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.0e-60 238.4 236 51.3
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-53 214.9 227 49.3
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 5.3e-49 199.5 305 41.3
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 4.2e-46 189.9 356 36.2
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.6e-45 188.0 139 63.3
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.0e-44 183.7 136 66.9
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.5e-43 181.4 321 35.8
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.8e-42 177.2 231 42.4
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.5e-40 171.4 359 35.1
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.5e-40 171.4 359 35.1
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.0e-36 156.8 157 50.3
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.1e-33 148.7 371 30.7
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.0e-28 132.1 389 27.0
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 4.5e-24 116.7 378 25.4
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.7e-23 114.8 86 69.8
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.7e-23 114.8 86 69.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 3.0e-20 104.0 272 28.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.8e-17 94.7 104 48.1
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 9.1e-17 92.4 127 40.9
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.1e-13 81.3 53 71.7
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 7.5e-11 72.8 71 52.1
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 7.8e-08 62.8 75 46.7
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 1.9e-06 58.2 41 65.9


User provided reference genes

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