Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 3.0e-78 296.2 142 100.0
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 2.4e-75 286.6 142 93.0
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.4e-75 286.6 142 95.8
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.4e-75 286.6 142 95.8
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 2.4e-75 286.6 142 95.8
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 5.3e-75 285.4 142 95.1
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 5.3e-75 285.4 142 94.4
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 1.5e-74 283.9 142 93.0
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 5.9e-74 282.0 142 91.5
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 5.9e-74 282.0 142 91.5
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 5.9e-74 282.0 142 91.5
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 5.9e-74 282.0 142 91.5
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 5.9e-74 282.0 142 91.5
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.3e-73 280.8 142 91.5
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 2.2e-73 280.0 142 92.3
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 3.8e-73 279.3 142 90.8
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 6.5e-73 278.5 142 91.5
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 7.2e-72 275.0 142 90.8
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 7.4e-69 265.0 142 89.4
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.1e-67 261.2 142 85.9
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 4.2e-64 249.2 142 79.6
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 5.5e-64 248.8 142 81.0
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 9.4e-64 248.1 142 78.2
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.2e-63 247.7 142 78.2
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 3.6e-63 246.1 142 78.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 7.9e-63 245.0 142 77.5
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 7.9e-63 245.0 144 79.9
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 7.9e-63 245.0 145 79.3
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.0e-62 244.6 142 76.8
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.8e-62 243.8 144 79.9
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.8e-62 243.8 151 77.5
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.3e-62 243.4 144 79.9
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.3e-62 243.4 144 79.2
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.3e-62 243.4 144 79.2
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 2.3e-62 243.4 142 76.8
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 2.3e-62 243.4 149 77.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 76.9
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 5.1e-62 242.3 142 76.1
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 6.7e-62 241.9 142 78.2
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 6.7e-62 241.9 142 78.2
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 6.7e-62 241.9 144 76.4
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 6.7e-62 241.9 143 78.3
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 8.8e-62 241.5 142 78.2
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 8.8e-62 241.5 143 76.2
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.1e-61 241.1 143 76.9
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.1e-61 241.1 142 76.8
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 2.0e-61 240.4 143 76.9
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.2
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 3.3e-61 239.6 142 77.5
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 75.5
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 77.6
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 5.7e-61 238.8 149 73.8
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 77.6
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 77.6
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.3e-60 237.7 142 75.4
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 74.8
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.2e-60 236.9 143 77.6
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 2.2e-60 236.9 143 75.5
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 75.5
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 2.8e-60 236.5 142 76.8
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 76.2
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 6.3e-60 235.3 143 74.8
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.8e-59 233.8 142 74.6
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.8e-59 233.8 144 73.6
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.4e-59 233.4 146 74.7
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.4e-59 233.4 143 74.8
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 75.5
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 4.1e-59 232.6 142 74.6
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 5.3e-59 232.3 141 73.8
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 9.1e-59 231.5 142 73.9
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 9.1e-59 231.5 142 73.9
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 9.1e-59 231.5 141 73.8
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 1.2e-58 231.1 141 73.8
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 2.6e-58 229.9 141 73.0
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 2.6e-58 229.9 141 73.0
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 5.9e-58 228.8 142 71.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 5.9e-58 228.8 142 72.5
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 5.9e-58 228.8 143 72.7
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 7.7e-58 228.4 142 71.1
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 72.5
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 2.2e-57 226.9 141 70.9
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 2.2e-57 226.9 142 71.1
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 2.9e-57 226.5 143 70.6
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 5.0e-57 225.7 142 72.5
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.0e-57 225.7 141 69.5
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 5.0e-57 225.7 142 71.8
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 5.0e-57 225.7 142 70.4
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.5e-57 225.3 141 69.5
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 8.5e-57 224.9 142 71.1
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.5e-57 224.9 142 69.7
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.4e-56 224.2 142 69.7
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.9e-56 223.8 144 69.4
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.5e-56 223.4 144 69.4
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.5e-56 223.4 143 69.9
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 3.2e-56 223.0 144 68.1
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.2e-56 223.0 142 71.1
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.2e-56 223.0 142 70.4
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 3.2e-56 223.0 142 69.7
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 9.4e-56 221.5 142 69.7
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 9.4e-56 221.5 142 69.7
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.6e-55 220.7 142 77.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 2.1e-55 220.3 142 69.0
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.0e-54 218.0 143 69.2
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-53 213.0 142 67.6
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-53 213.0 142 67.6
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.7e-52 210.7 142 65.5
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 1.2e-47 194.5 144 61.1
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 2.7e-47 193.4 142 59.9
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.6e-45 186.8 142 60.6
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 4.8e-44 182.6 138 58.7
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 6.3e-44 182.2 142 55.6
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.0e-41 174.9 142 64.1
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.9e-40 170.6 142 57.7
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 6.1e-39 165.6 115 65.2
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.0e-38 164.9 109 67.9
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 3.1e-35 153.3 140 51.4
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 9.1e-35 151.8 110 64.5
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 2.7e-34 150.2 103 63.1
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.7e-33 147.5 105 64.8
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 3.0e-30 136.7 113 59.3
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.7e-29 132.5 130 46.9
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 9.8e-29 131.7 109 56.0
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.9e-17 93.2 144 36.8
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.9e-16 90.9 142 38.7
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.1e-14 83.6 142 35.9
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.9e-11 74.3 111 40.5
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 7.0e-11 72.4 119 40.3
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.9e-08 64.3 32 78.1
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 4.3e-08 63.2 35 74.3
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 4.7e-07 59.7 35 71.4


User provided reference genes

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