Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 6.6e-51 203.8 104 100.0
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.6e-44 182.6 93 98.9
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.6e-33 146.0 74 97.3
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 5.8e-31 137.5 70 95.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 5.8e-31 137.5 70 95.7
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 5.8e-31 137.5 70 95.7
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 7.1e-29 130.6 74 87.8
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 4.1e-24 114.8 97 67.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.2e-22 109.0 77 74.0
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.5e-21 105.5 73 72.6
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.2e-20 103.2 75 72.0
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 3.5e-20 101.7 78 67.9
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 5.7e-18 94.4 78 66.7
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 5.7e-18 94.4 74 66.2
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.3e-17 93.2 80 62.5
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.1e-13 80.1 70 62.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.1e-13 80.1 70 62.9
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 9.4e-13 77.0 73 60.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 9.4e-13 77.0 70 61.4
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.1e-12 75.9 70 60.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.5e-10 69.7 78 50.0
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.3e-09 66.6 42 73.8
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.7e-09 66.2 76 51.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 2.8e-09 65.5 39 76.9
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 6.3e-09 64.3 76 50.0
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-08 63.2 39 74.4
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.4e-08 62.4 39 71.8
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 2.4e-08 62.4 75 44.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 4.1e-08 61.6 78 48.7
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 4.1e-08 61.6 46 58.7
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 5.3e-08 61.2 78 47.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 6.9e-08 60.8 75 42.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 6.9e-08 60.8 75 42.7
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 6.9e-08 60.8 70 48.6
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 9.1e-08 60.5 42 64.3
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.2e-07 60.1 87 44.8
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.2e-07 60.1 79 45.6
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.5e-07 59.7 42 64.3
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.5e-07 59.7 79 48.1
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.5e-07 59.7 79 44.3
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.5e-07 59.7 79 44.3
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.5e-07 59.7 79 46.8
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.5e-07 59.7 42 64.3
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.0e-07 59.3 79 48.1
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.0e-07 59.3 70 42.9
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.6e-07 58.9 42 64.3
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.6e-07 58.9 80 42.5
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.6e-07 58.9 75 41.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.6e-07 58.9 42 61.9
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 3.4e-07 58.5 75 45.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 3.4e-07 58.5 78 44.9
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 4.5e-07 58.2 76 42.1
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 5.9e-07 57.8 83 45.8
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.9e-07 57.8 77 40.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 5.9e-07 57.8 39 69.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 7.7e-07 57.4 34 76.5
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.0e-06 57.0 80 42.5
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.0e-06 57.0 42 57.1
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.3e-06 56.6 39 64.1
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.3e-06 56.6 79 43.0
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.3e-06 56.6 43 58.1
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.3e-06 56.6 72 41.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.7e-06 56.2 42 59.5
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.7e-06 56.2 34 70.6
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.2e-06 55.8 80 40.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.2e-06 55.8 42 57.1
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.2e-06 55.8 81 45.7
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.2e-06 55.8 39 71.8
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.9e-06 55.5 39 66.7
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 3.8e-06 55.1 42 57.1
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.8e-06 55.1 42 57.1
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.8e-06 55.1 42 57.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.8e-06 55.1 42 54.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 3.8e-06 55.1 46 58.7
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 5.0e-06 54.7 35 71.4
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.0e-06 54.7 42 54.8
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 5.0e-06 54.7 79 40.5
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 5.0e-06 54.7 37 70.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 6.5e-06 54.3 79 41.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 6.5e-06 54.3 42 57.1
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 6.5e-06 54.3 34 73.5


User provided reference genes

Program Settings