Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 2.8e-152 542.0 284 100.0
BolC3t19771H Brassica oleracea HOM05D009159 ORTHO05D005331 1.6e-131 473.0 287 87.5
BcaC01g00047 Brassica carinata HOM05D009159 ORTHO05D005331 6.1e-131 471.1 287 87.1
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 1.4e-130 469.9 287 87.5
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 1.3e-128 463.4 291 83.2
A08p25580 Brassica napus HOM05D009159 ORTHO05D005331 1.8e-122 443.0 286 82.9
BraA08t34510Z Brassica rapa HOM05D009159 ORTHO05D005331 1.8e-122 443.0 286 82.9
Sp1g24680 Schrenkiella parvula HOM05D009159 ORTHO05D005331 6.1e-115 417.9 298 79.2
BcaB03g13928 Brassica carinata HOM05D009159 ORTHO05D005331 2.0e-113 412.9 293 79.2
BcaB07g32463 Brassica carinata HOM05D009159 ORTHO05D005331 1.7e-109 399.8 314 74.2
AL1G42030 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 9.4e-108 394.0 332 70.2
CARHR027910 Cardamine hirsuta HOM05D009159 ORTHO05D005331 7.5e-105 384.4 315 68.9
BcaC05g26859 Brassica carinata HOM05D009159 ORTHO05D005331 4.3e-100 368.6 320 69.4
C05p27410 Brassica napus HOM05D009159 ORTHO05D005331 4.0e-98 362.1 319 67.7
AT1G28400 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 1.2e-97 360.5 337 65.9
BolC5t31456H Brassica oleracea HOM05D009159 ORTHO05D005331 3.4e-97 359.0 320 68.1
A09p37640 Brassica napus HOM05D009159 ORTHO05D005331 4.4e-97 358.6 346 64.2
BraA09t39274Z Brassica rapa HOM05D009159 ORTHO05D005331 4.4e-97 358.6 346 64.2
Carub.0001s2688 Capsella rubella HOM05D009159 ORTHO05D005331 7.0e-87 324.7 342 59.6
Sp4g16260 Schrenkiella parvula HOM05D009159 ORTHO05D005331 3.4e-57 226.1 286 52.4
CARHR128000 Cardamine hirsuta HOM05D009159 ORTHO05D005331 3.8e-56 222.6 289 50.9
Thhalv10017182m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 5.4e-55 218.8 287 50.9
Sp2g03920 Schrenkiella parvula HOM05D009159 ORTHO05D005331 2.4e-50 203.4 125 81.6
AL4G29650 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 1.7e-48 197.2 317 43.8
AT2G33850 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 4.2e-47 192.6 300 44.3
A04p26070 Brassica napus HOM05D009159 ORTHO05D005331 1.9e-44 183.7 319 42.6
BraA04t18109Z Brassica rapa HOM05D009159 ORTHO05D005331 2.8e-43 179.9 320 41.9
THA.LOC104814229 Tarenaya hassleriana HOM05D009159 ORTHO05D005331 1.6e-38 164.1 291 44.7
Carub.0004s1555 Capsella rubella HOM05D009159 ORTHO05D005331 2.7e-38 163.3 342 37.7
Aa31LG6G10320 Aethionema arabicum HOM05D009159 ORTHO05D005331 1.3e-37 161.0 368 37.8
THA.LOC104820566 Tarenaya hassleriana HOM05D009159 ORTHO05D005331 2.5e-36 156.8 276 46.0
C04p63410 Brassica napus HOM05D009159 ORTHO05D005331 6.5e-32 142.1 320 37.8
BolC4t27816H Brassica oleracea HOM05D009159 ORTHO05D005331 6.5e-32 142.1 320 37.8
BcaC02g07762 Brassica carinata HOM05D009159 ORTHO05D005331 7.2e-31 138.7 241 42.7
Aa31LG9G13750 Aethionema arabicum HOM05D009159 ORTHO05D005331 3.0e-21 106.7 284 35.2
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 2.6e-12 77.0 296 32.1
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 3.3e-12 76.6 211 31.3
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.7e-11 74.3 244 31.1
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 3.7e-11 73.2 260 28.8
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 1.1e-10 71.6 266 31.6
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 3.1e-10 70.1 238 33.2
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 5.9e-09 65.9 224 33.5
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.3e-08 64.7 295 29.5
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.3e-08 64.7 295 29.5
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 1.7e-08 64.3 313 28.8
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 5.0e-08 62.8 314 29.0
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 2.5e-07 60.5 287 27.5
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 3.2e-07 60.1 233 29.2
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 3.2e-07 60.1 265 32.8
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 3.2e-07 60.1 231 29.4
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 4.2e-07 59.7 290 30.0
ECA236G4287 Erigeron canadensis HOM05D007160 ORTHO05D005331 5.5e-07 59.3 257 28.0
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.2e-06 58.2 282 31.2
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 1.2e-06 58.2 271 28.8
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 2.1e-06 57.4 89 43.8
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 2.7e-06 57.0 269 28.3
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 2.7e-06 57.0 89 43.8
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 2.7e-06 57.0 89 43.8
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 2.7e-06 57.0 82 46.3
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 4.7e-06 56.2 89 43.8


User provided reference genes

Program Settings