Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12104 Brassica carinata HOM05D000171 ORTHO05D000101 7.0e-104 380.6 185 100.0
BraA08t34506Z Brassica rapa HOM05D000171 ORTHO05D000101 6.1e-47 191.4 271 44.3
A08p25530 Brassica napus HOM05D000171 ORTHO05D000101 1.3e-46 190.3 271 43.9
BolC3t19783H Brassica oleracea HOM05D000171 ORTHO05D000101 1.8e-46 189.9 271 43.9
C03p75240 Brassica napus HOM05D000171 ORTHO05D000101 2.5e-45 186.0 271 43.5
C03p02300 Brassica napus HOM05D000171 ORTHO05D000101 3.0e-38 162.5 265 41.5
BcaB01g05923 Brassica carinata HOM05D000171 ORTHO05D000101 1.5e-37 160.2 265 41.1
BolC3t12781H Brassica oleracea HOM05D000171 ORTHO05D000101 1.5e-37 160.2 265 41.1
BcaC01g00059 Brassica carinata HOM05D000171 ORTHO05D000101 3.6e-31 139.0 98 71.4
BraA08t34528Z Brassica rapa HOM05D000171 ORTHO05D000101 1.0e-30 137.5 259 38.2
BcaC01g00058 Brassica carinata HOM05D000171 ORTHO05D000101 2.3e-30 136.3 98 72.4
Sp1g24400 Schrenkiella parvula HOM05D000171 ORTHO05D000101 6.7e-30 134.8 253 38.3
BolC3t19739H Brassica oleracea HOM05D000171 ORTHO05D000101 1.8e-27 126.7 254 37.8
BolC3t19773H Brassica oleracea HOM05D000171 ORTHO05D000101 7.7e-26 121.3 258 35.3
A10p24780 Brassica napus HOM05D000171 ORTHO05D000101 2.9e-25 119.4 265 34.3
BraA09t39298Z Brassica rapa HOM05D000171 ORTHO05D000101 6.5e-25 118.2 256 35.9
A09p37860 Brassica napus HOM05D000171 ORTHO05D000101 1.9e-24 116.7 256 35.5
A08p25770 Brassica napus HOM05D000367 ORTHO05D002159 4.2e-24 115.5 98 61.2
BcaB01g00207 Brassica carinata HOM05D000171 ORTHO05D000101 5.5e-24 115.2 216 36.6
BraA09t39297Z Brassica rapa HOM05D000171 ORTHO05D000101 1.6e-23 113.6 258 34.9
Thhalv10002973m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.4e-19 100.5 261 32.6
AL6G29130 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.4e-19 99.8 259 34.4
Thhalv10009643m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.0e-17 94.4 106 50.9
Carub.0006s1624 Capsella rubella HOM05D000171 ORTHO05D000101 1.7e-17 93.6 98 51.0
BcaB07g32429 Brassica carinata HOM05D000171 ORTHO05D000101 2.9e-17 92.8 228 32.0
A03p01930 Brassica napus HOM05D000171 ORTHO05D000101 2.9e-17 92.8 79 63.3
BraA10t44542Z Brassica rapa HOM05D000171 ORTHO05D000101 6.5e-17 91.7 101 52.5
A08p25800 Brassica napus HOM05D000171 ORTHO05D000101 2.1e-15 86.7 104 51.0
Thhalv10009752m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.7e-15 86.3 98 50.0
BolC3t19733H Brassica oleracea HOM05D000171 ORTHO05D000101 6.8e-14 81.6 109 46.8
A09p37850 Brassica napus HOM05D000171 ORTHO05D000101 2.0e-13 80.1 184 34.8
AL2G17240 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.8e-13 77.8 231 32.0
C03p74840 Brassica napus HOM05D000171 ORTHO05D000101 2.8e-12 76.3 195 33.8
Thhalv10027439m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.7e-12 75.9 280 26.1
Sp1g02140 Schrenkiella parvula HOM05D000171 ORTHO05D000101 4.8e-12 75.5 107 42.1
BcaC08g43262 Brassica carinata HOM05D000171 ORTHO05D000101 6.3e-12 75.1 251 29.5
A06p02840 Brassica napus HOM05D000171 ORTHO05D000101 6.3e-12 75.1 108 44.4
BcaB07g33529 Brassica carinata HOM05D000171 ORTHO05D000101 1.1e-11 74.3 105 44.8
Sp1g37770 Schrenkiella parvula HOM05D000171 ORTHO05D000101 1.1e-11 74.3 115 41.7
Thhalv10009934m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.8e-11 73.6 104 43.3
BcaC05g24555 Brassica carinata HOM05D000171 ORTHO05D031917 2.4e-11 73.2 90 46.7
BcaC08g43260 Brassica carinata HOM05D000171 ORTHO05D000101 4.1e-11 72.4 108 43.5
C06p06060 Brassica napus HOM05D000171 ORTHO05D000101 4.1e-11 72.4 108 43.5
BolC6t35719H Brassica oleracea HOM05D000171 ORTHO05D000101 4.1e-11 72.4 108 43.5
AL1G66270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.0e-11 71.6 278 28.1
Thhalv10012180m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.6e-10 70.5 269 26.4
BraA06t23491Z Brassica rapa HOM05D000171 ORTHO05D000101 2.0e-10 70.1 177 28.8
AL2G16580 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.7e-10 69.7 103 42.7
AT1G50870 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.5e-10 68.9 107 39.3
BcaB07g33527 Brassica carinata HOM05D000171 ORTHO05D000101 4.5e-10 68.9 108 43.5
A06p17520 Brassica napus HOM05D000987 ORTHO05D000831 4.5e-10 68.9 114 38.6
BraA06t24848Z Brassica rapa HOM05D000987 ORTHO05D000831 4.5e-10 68.9 114 38.6
A09p16070 Brassica napus HOM05D000171 ORTHO05D000101 7.7e-10 68.2 258 26.4
BraA09t37243Z Brassica rapa HOM05D000171 ORTHO05D000101 7.7e-10 68.2 258 26.4
BcaB07g33524 Brassica carinata HOM05D000171 ORTHO05D000101 1.3e-09 67.4 108 41.7
BcaB07g33525 Brassica carinata HOM05D000171 ORTHO05D000101 1.3e-09 67.4 108 41.7
BcaB02g09678 Brassica carinata HOM05D000171 ORTHO05D000101 2.3e-09 66.6 103 39.8
AT1G47730 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.9e-09 66.2 113 39.8
CARHR037410 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.9e-09 66.2 107 40.2
Carub.0002s0515 Capsella rubella HOM05D000171 ORTHO05D000101 6.5e-09 65.1 112 39.3
BcaB02g11190 Brassica carinata HOM05D000171 ORTHO05D000101 8.6e-09 64.7 269 24.9
BcaC07g36959 Brassica carinata HOM05D000171 ORTHO05D000101 8.6e-09 64.7 109 36.7
AL6G29150 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-08 64.3 87 47.1
A10p01760 Brassica napus HOM05D000171 ORTHO05D000101 1.1e-08 64.3 106 37.7
Carub.0002s0572 Capsella rubella HOM05D000171 ORTHO05D000101 1.5e-08 63.9 101 40.6
BraA10t42360Z Brassica rapa HOM05D000171 ORTHO05D000101 1.9e-08 63.5 105 41.0
CARHR040900 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.9e-08 63.5 107 42.1
Thhalv10012114m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.9e-08 63.5 211 29.9
AL2G11100 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.2e-08 62.8 108 42.6
Thhalv10015925m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.2e-08 62.8 199 27.1
Sp5g04230 Schrenkiella parvula HOM05D000171 ORTHO05D000101 3.2e-08 62.8 101 36.6
Carub.0196s0001 Capsella rubella HOM05D000171 ORTHO05D000101 4.2e-08 62.4 111 42.3
AT1G47790 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.5e-08 62.0 104 35.6
AT3G10240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.5e-08 62.0 108 40.7
C03p74900 Brassica napus HOM05D000171 ORTHO05D000101 5.5e-08 62.0 72 51.4
BolC5t31418H Brassica oleracea HOM05D000171 ORTHO05D000101 5.5e-08 62.0 75 48.0
Thhalv10027600m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.5e-08 62.0 139 35.3
Carub.0005s2539 Capsella rubella HOM05D000171 ORTHO05D000101 9.5e-08 61.2 110 37.3
Thhalv10015829m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.2e-07 60.8 107 40.2
AL6G29160 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.6e-07 60.5 105 40.0
BcaB02g09798 Brassica carinata HOM05D000171 ORTHO05D000101 1.6e-07 60.5 105 39.0
BcaB07g32138 Brassica carinata HOM05D000171 ORTHO05D000101 2.1e-07 60.1 104 35.6
BcaC04g22437 Brassica carinata HOM05D000171 ORTHO05D000101 2.1e-07 60.1 100 42.0
BcaB01g02794 Brassica carinata HOM05D000171 ORTHO05D000101 3.6e-07 59.3 103 43.7
AL6G42950 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.7e-07 58.9 263 25.9
Thhalv10003356m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.7e-07 58.9 111 38.7
A10p01120 Brassica napus HOM05D000171 ORTHO05D000101 6.1e-07 58.5 106 36.8
Thhalv10012059m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.1e-07 58.5 108 38.9
Carub.0002s0516 Capsella rubella HOM05D000171 ORTHO05D000101 8.0e-07 58.2 107 37.4
Carub.0002s0571 Capsella rubella HOM05D000171 ORTHO05D000101 8.0e-07 58.2 101 36.6
CARHR037710 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.0e-07 58.2 274 24.1
CARHR037720 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.0e-07 58.2 283 26.5
BcaB01g02793 Brassica carinata HOM05D000171 ORTHO05D000101 1.0e-06 57.8 103 42.7
Carub.0007s2018 Capsella rubella HOM05D000171 ORTHO05D000101 1.0e-06 57.8 111 37.8
AT4G09190 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-06 57.4 104 37.5
BraA08t34535Z Brassica rapa HOM05D000171 ORTHO05D000101 1.4e-06 57.4 76 46.1
Carub.0001s3671 Capsella rubella HOM05D000171 ORTHO05D000101 1.4e-06 57.4 111 41.4
BcaC01g04725 Brassica carinata HOM05D003178 ORTHO05D003636 1.8e-06 57.0 102 41.2
C05p01150 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-06 57.0 106 35.8
BolC3t15753H Brassica oleracea HOM05D000171 ORTHO05D000101 1.8e-06 57.0 102 41.2
Carub.0003s0941 Capsella rubella HOM05D000171 ORTHO05D000101 1.8e-06 57.0 109 39.4
BcaC05g27390 Brassica carinata HOM05D000171 ORTHO05D000101 2.3e-06 56.6 108 34.3
BolC5t28897H Brassica oleracea HOM05D000171 ORTHO05D000101 2.3e-06 56.6 106 36.8
Carub.0002s0570 Capsella rubella HOM05D000171 ORTHO05D000101 2.3e-06 56.6 100 40.0
Thhalv10005289m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.3e-06 56.6 103 40.8
Carub.0004s0535 Capsella rubella HOM05D000171 ORTHO05D000101 3.0e-06 56.2 85 37.6
Carub.0004s1097 Capsella rubella HOM05D000171 ORTHO05D000101 3.0e-06 56.2 103 43.7
AL1G54620 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.0e-06 55.8 183 31.1
AL1G54130 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.2e-06 55.5 69 46.4
BcaC01g04723 Brassica carinata HOM05D000171 ORTHO05D000101 5.2e-06 55.5 101 38.6
BolC3t15758H Brassica oleracea HOM05D000171 ORTHO05D000101 5.2e-06 55.5 101 38.6
BolC3t15760H Brassica oleracea HOM05D000171 ORTHO05D000101 5.2e-06 55.5 101 38.6
C05p33250 Brassica napus HOM05D000171 ORTHO05D000101 6.8e-06 55.1 108 37.0
BolC5t32050H Brassica oleracea HOM05D000171 ORTHO05D000101 6.8e-06 55.1 108 37.0
BraA10t42451Z Brassica rapa HOM05D000171 ORTHO05D000101 8.8e-06 54.7 106 34.0
Carub.0001s3982 Capsella rubella HOM05D000171 ORTHO05D000101 8.8e-06 54.7 169 29.6


User provided reference genes

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