Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12083 Brassica carinata HOM05D006903 ORTHO05D008655 2.3e-244 848.6 457 100.0
BraA08t34657Z Brassica rapa HOM05D006903 ORTHO05D008655 2.2e-215 752.3 457 89.3
A08p27120 Brassica napus HOM05D006903 ORTHO05D008655 6.4e-215 750.7 457 88.8
C03p72740 Brassica napus HOM05D006903 ORTHO05D008655 3.0e-212 741.9 457 87.5
BolC3t19572H Brassica oleracea HOM05D006903 ORTHO05D008655 5.1e-212 741.1 457 87.5
Sp1g22600 Schrenkiella parvula HOM05D006903 ORTHO05D008655 1.9e-206 722.6 464 83.8
Thhalv10007585m.g Eutrema salsugineum HOM05D006903 ORTHO05D008655 1.1e-203 713.4 464 83.2
CARHR025840 Cardamine hirsuta HOM05D006903 ORTHO05D008655 4.8e-194 681.4 464 80.2
Carub.0001s2488 Capsella rubella HOM05D006903 ORTHO05D008655 4.0e-193 678.3 463 79.7
AT1G26090 Arabidopsis thaliana HOM05D006903 ORTHO05D008655 1.6e-189 666.4 464 78.9
AL1G39690 Arabidopsis lyrata HOM05D006903 ORTHO05D008655 1.8e-188 662.9 464 78.2
Aa31LG7G8910 Aethionema arabicum HOM05D006903 ORTHO05D008655 1.4e-174 616.7 463 73.0
MD13G1047700 Malus domestica HOM05D006903 ORTHO05D008655 7.7e-136 488.0 430 60.0
Peaxi162Scf00367g00739 Petunia axillaris HOM05D006903 ORTHO05D008655 1.1e-134 484.2 411 62.3
CSS0045037 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 2.5e-134 483.0 409 62.6
Cpa.g.sc1.226 Carica papaya HOM05D006903 ORTHO05D008655 1.4e-132 477.2 459 57.5
Haze_17427 Corylus avellana HOM05D006903 ORTHO05D008655 5.2e-132 475.3 442 57.7
Haze_17428 Corylus avellana HOM05D006903 ORTHO05D008655 5.2e-132 475.3 442 57.7
FAN12G3275 Fragaria x ananassa HOM05D006903 ORTHO05D008655 5.2e-132 475.3 412 60.0
Rhsim09G0113100 Rhododendron simsii HOM05D006903 ORTHO05D008655 5.2e-132 475.3 407 60.9
RcHm_v2.0_Chr4g0435961 Rosa chinensis HOM05D006903 ORTHO05D008655 6.8e-132 474.9 414 59.9
FvH4_4g28200 Fragaria vesca HOM05D006903 ORTHO05D008655 2.0e-131 473.4 412 60.0
Prupe.1G304300 Prunus persica HOM05D006903 ORTHO05D008655 2.6e-131 473.0 412 60.4
Dinv16514 Davidia involucrata HOM05D006903 ORTHO05D008655 1.7e-130 470.3 410 60.5
Migut.E00291 Erythranthe guttata HOM05D006903 ORTHO05D008655 1.7e-130 470.3 406 60.8
FAN22G1870 Fragaria x ananassa HOM05D006903 ORTHO05D008655 3.7e-130 469.2 414 59.7
QL01p001027 Quercus lobata HOM05D006903 ORTHO05D008655 8.3e-130 468.0 409 60.1
CAN.G184.79 Capsicum annuum HOM05D006903 ORTHO05D008655 1.1e-129 467.6 411 59.9
Actinidia14845 Actinidia chinensis HOM05D006903 ORTHO05D008655 5.4e-129 465.3 458 55.5
Nitab4.5_0005803g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 9.2e-129 464.5 411 59.1
Lsat_1_v5_gn_3_58300 Lactuca sativa HOM05D006903 ORTHO05D008655 1.6e-128 463.8 412 59.5
Sopen05g005730 Solanum pennellii HOM05D006903 ORTHO05D008655 1.6e-128 463.8 462 55.4
CANSAT64G1629 Cannabis sativa HOM05D006903 ORTHO05D008655 2.0e-128 463.4 435 57.0
Sed0022387 Sechium edule HOM05D006903 ORTHO05D008655 4.5e-128 462.2 411 60.8
CsaV3_5G033920 Cucumis sativus L. HOM05D006903 ORTHO05D008655 1.0e-127 461.1 409 60.1
Glyma.02G101000 Glycine max HOM05D006903 ORTHO05D008655 1.0e-127 461.1 402 60.9
Ca_26576_v3 Cicer arietinum L. HOM05D006903 ORTHO05D008655 8.6e-127 458.0 409 59.4
DCAR_030091 Daucus carota HOM05D006903 ORTHO05D008655 8.6e-127 458.0 402 60.2
Oeu044621.1 Olea europaea HOM05D006903 ORTHO05D008655 8.6e-127 458.0 406 59.1
Phvul.003G026200 Phaseolus vulgaris HOM05D006903 ORTHO05D008655 1.5e-126 457.2 436 56.9
Lalb_Chr04g0254991 Lupinus albus HOM05D006903 ORTHO05D008655 4.3e-126 455.7 406 60.1
FAN17G3035 Fragaria x ananassa HOM05D006903 ORTHO05D008655 7.3e-126 454.9 413 58.1
Medtr5g053280 Medicago truncatula HOM05D006903 ORTHO05D008655 7.3e-126 454.9 430 57.0
Duzib248G0677 Durio zibethinus HOM05D006903 ORTHO05D008655 9.5e-126 454.5 411 59.4
Gorai.005G137600 Gossypium raimondii HOM05D006903 ORTHO05D008655 9.5e-126 454.5 407 60.2
arahy.Tifrunner.gnm1.ann1.9PC4TR Arachis hypogaea HOM05D006903 ORTHO05D008655 1.2e-125 454.1 407 59.7
Lj2g0014822 Lotus japonicus HOM05D006903 ORTHO05D008655 2.1e-125 453.4 409 58.9
HanXRQChr15g0476011 Helianthus annuus HOM05D006903 ORTHO05D008655 1.4e-124 450.7 410 58.3
arahy.Tifrunner.gnm1.ann1.RDH5GK Arachis hypogaea HOM05D006903 ORTHO05D008655 2.3e-124 449.9 407 58.7
GSVIVG01011964001 Vitis vinifera HOM05D006903 ORTHO05D008655 5.2e-124 448.7 411 57.4
VMungo1215G2648 Vigna mungo HOM05D006903 ORTHO05D008655 6.8e-124 448.4 435 56.1
Sabra10G0099600 Salix brachista HOM05D006903 ORTHO05D008655 2.6e-123 446.4 462 55.0
Lj3C1020T9 Lonicera japonica HOM05D006903 ORTHO05D008655 7.5e-123 444.9 451 57.0
SalBow8G1412 Salvia bowleyana HOM05D006903 ORTHO05D008655 7.5e-123 444.9 406 58.9
CiPaw.16G002500 Carya illinoinensis HOM05D006903 ORTHO05D008655 1.3e-122 444.1 393 60.3
Hund05771 Selenicereus undatus HOM05D006903 ORTHO05D008655 1.3e-122 444.1 408 56.4
Eucgr.G02357 Eucalyptus grandis HOM05D006903 ORTHO05D008655 2.2e-122 443.4 411 57.9
PGR119G0052 Punica granatum HOM05D006903 ORTHO05D008655 2.2e-122 443.4 407 57.7
PSO478G5279 Papaver somniferum HOM05D006903 ORTHO05D008655 2.0e-120 436.8 412 55.6
Potri.010G130700 Populus trichocarpa HOM05D006903 ORTHO05D008655 2.7e-120 436.4 458 53.5
FAN07G2589 Fragaria x ananassa HOM05D006903 ORTHO05D008655 3.5e-120 436.0 417 56.6
AUR62002930 Chenopodium quinoa HOM05D006903 ORTHO05D008655 8.6e-119 431.4 410 56.8
Nitab4.5_0004705g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 8.6e-119 431.4 409 56.2
Sc04g0006770 Simmondsia chinensis HOM05D006903 ORTHO05D008655 1.5e-118 430.6 410 54.6
EL10Ac6g14516 Beta vulgaris HOM05D006903 ORTHO05D008655 1.9e-118 430.3 458 52.6
Cc11_g10700 Coffea canephora HOM05D006903 ORTHO05D008655 1.9e-118 430.3 462 51.9
TPR.G22411 Trifolium pratense HOM05D006903 ORTHO05D008655 1.9e-118 430.3 382 60.5
ClCG05G023070 Citrullus lanatus HOM05D006903 ORTHO05D008655 3.3e-118 429.5 449 53.9
Nn3g17696 Nelumbo nucifera HOM05D006903 ORTHO05D008655 3.3e-118 429.5 466 52.4
MELO3C012210.2 Cucumis melo HOM05D006903 ORTHO05D008655 1.1e-116 424.5 429 55.0
Aqoxy3G00382 Aquilegia oxysepala HOM05D006903 ORTHO05D008655 3.1e-116 422.9 456 53.9
ECA246G0069 Erigeron canadensis HOM05D006903 ORTHO05D008655 8.9e-116 421.4 378 60.3
COL.COLO4_07859 Corchorus olitorius HOM05D006903 ORTHO05D008655 1.2e-115 421.0 411 56.2
PGSC0003DMG400000822 Solanum tuberosum HOM05D006903 ORTHO05D008655 2.9e-114 416.4 378 58.5
MBI10_g08549_MAGBIO Magnolia biondii HOM05D006903 ORTHO05D008655 2.4e-113 413.3 408 54.2
ATR0053G028 Amborella trichopoda HOM05D006903 ORTHO05D008655 2.1e-109 400.2 408 54.4
TWI31G1007 Tripterygium wilfordii HOM05D006903 ORTHO05D008655 4.0e-108 396.0 362 59.1
Cfa018642 Carpinus fangiana HOM05D006903 ORTHO05D008655 8.9e-108 394.8 407 54.1
Ciclev10033640m.g Citrus clementina HOM05D006903 ORTHO05D008655 1.1e-105 387.9 408 52.9
unitig_62.g23710 Utricularia gibba HOM05D006903 ORTHO05D008655 1.3e-103 380.9 437 50.8
Atru.chr11.1372 Acer truncatum HOM05D006903 ORTHO05D008655 8.1e-101 371.7 333 59.2
Zm00001eb252440 Zea mays HOM05D006903 ORTHO05D008655 1.7e-98 364.0 399 49.4
PSO017G3486 Papaver somniferum HOM05D006903 ORTHO05D008655 1.9e-97 360.5 359 53.2
Psat0s629g0200 Pisum sativum HOM05D006903 ORTHO05D008655 2.3e-95 353.6 331 57.1
Manes.06G073100 Manihot esculenta HOM05D006903 ORTHO05D008655 4.7e-93 345.9 335 59.1
AUR62007740 Chenopodium quinoa HOM05D006903 ORTHO05D008655 2.4e-92 343.6 382 50.0
SGA_v2.0_scaffold14G06815 Striga asiatica HOM05D006903 ORTHO05D008655 5.8e-91 339.0 335 54.0
Thecc.02G362300 Theobroma cacao HOM05D006903 ORTHO05D008655 1.6e-88 330.9 291 59.5
AagrBONN_evm.TU.Sc2ySwM_117.1113 Anthoceros agrestis HOM05D006903 ORTHO05D008655 2.3e-87 327.0 413 45.3
Hma1.2p1_0406F.1_g145980 Hydrangea macrophylla HOM05D006903 ORTHO05D008655 1.5e-86 324.3 291 59.1
vmacro10523 Vaccinium macrocarpon HOM05D006903 ORTHO05D008655 2.5e-86 323.6 381 48.0
Pp3c6_9390 Physcomitrium patens HOM05D006903 ORTHO05D008655 1.8e-84 317.4 410 43.9
Ah.03g137980 Amaranthus hybridus HOM05D006903 ORTHO05D008655 3.1e-84 316.6 362 48.3
Gohir.D02G116200 Gossypium hirsutum HOM05D006903 ORTHO05D008655 6.9e-84 315.5 264 62.5
Gohir.A03G097100 Gossypium hirsutum HOM05D006903 ORTHO05D008655 1.2e-83 314.7 264 62.5
Mapoly0088s0003 Marchantia polymorpha HOM05D006903 ORTHO05D008655 2.6e-83 313.5 402 44.3
SEGI_13133 Sequoiadendron giganteum HOM05D006903 ORTHO05D008655 4.2e-81 306.2 368 46.7
TAR629G3475 Trochodendron aralioides HOM05D006903 ORTHO05D008655 9.3e-81 305.1 286 52.8
SMO367G1048 Selaginella moellendorffii HOM05D006903 ORTHO05D008655 6.9e-76 288.9 410 42.0
Solyc05g009920.4 Solanum lycopersicum HOM05D006903 ORTHO05D008655 1.6e-72 277.7 281 53.7
HanXRQChr00c0584g0576181 Helianthus annuus HOM05D006903 ORTHO05D008655 6.0e-72 275.8 230 60.9
SEGI_18137 Sequoiadendron giganteum HOM05D006903 ORTHO05D008655 8.7e-71 271.9 335 46.6
HPP92_003072 Vanilla planifolia HOM05D006903 ORTHO05D008655 2.0e-43 181.0 256 42.2
HPP92_003073 Vanilla planifolia HOM05D006903 ORTHO05D008655 8.8e-39 165.6 165 55.8
Os02g0711200 Oryza sativa ssp. japonica HOM05D006903 ORTHO05D008655 2.4e-36 157.5 163 52.8
GSVIVG01021676001 Vitis vinifera HOM05D006903 ORTHO05D008655 1.7e-34 151.4 139 57.6
Potri.008G115401 Populus trichocarpa HOM05D006903 ORTHO05D008655 6.7e-31 139.4 156 51.9
GSVIVG01031030001 Vitis vinifera HOM05D006903 ORTHO05D008655 6.3e-29 132.9 110 62.7
CSS0042654 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 8.2e-29 132.5 148 52.7
Glyma.01G089202 Glycine max HOM05D006903 ORTHO05D008655 4.1e-28 130.2 146 47.9
HanXRQChr00c0584g0576191 Helianthus annuus HOM05D006903 ORTHO05D008655 5.3e-28 129.8 108 57.4
GSVIVG01021677001 Vitis vinifera HOM05D006903 ORTHO05D008655 8.3e-21 105.9 96 52.1
TAR629G0855 Trochodendron aralioides HOM05D006903 ORTHO05D008655 2.0e-19 101.3 119 49.6
CSS0002023 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 4.2e-17 93.6 123 51.2
TAR626G1973 Trochodendron aralioides HOM05D006903 ORTHO05D008655 3.6e-16 90.5 92 51.1


User provided reference genes

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