Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 9.2e-59 229.9 111 100.0
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 7.9e-18 94.0 49 91.8
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 7.9e-18 94.0 49 91.8
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 7.9e-18 94.0 49 91.8
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 7.9e-18 94.0 49 91.8
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 7.9e-18 94.0 49 91.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 7.9e-18 94.0 49 91.8
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.3e-17 93.2 49 89.8
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-17 92.8 49 89.8
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-17 92.8 49 89.8
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.8e-17 92.8 49 89.8
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.8e-17 92.8 49 89.8
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 3.0e-17 92.0 49 89.8
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 3.9e-17 91.7 49 89.8
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 8.7e-17 90.5 49 87.8
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.5e-16 89.7 49 87.8
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.9e-16 89.4 49 85.7
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.3e-16 88.6 49 85.7
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-15 85.1 45 91.1
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-15 85.1 45 91.1
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 3.7e-15 85.1 45 91.1
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 8.2e-15 84.0 49 77.6
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.8e-14 82.8 49 77.6
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 2.4e-14 82.4 49 77.6
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.4e-14 82.4 49 79.6
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 3.1e-14 82.0 49 75.5
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 3.1e-14 82.0 49 75.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.1e-14 82.0 49 77.6
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 3.1e-14 82.0 49 75.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 4.1e-14 81.6 49 73.5
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 4.1e-14 81.6 48 79.2
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 4.1e-14 81.6 49 75.5
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 5.3e-14 81.3 49 75.5
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 5.3e-14 81.3 49 77.6
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 5.3e-14 81.3 49 75.5
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 6.9e-14 80.9 49 77.6
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 6.9e-14 80.9 49 77.6
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 6.9e-14 80.9 49 77.6
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.2e-13 80.1 49 73.5
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.2e-13 80.1 49 73.5
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.2e-13 80.1 49 73.5
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.2e-13 80.1 49 73.5
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.2e-13 80.1 49 75.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.5e-13 79.7 49 73.5
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.5e-13 79.7 49 73.5
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 2.0e-13 79.3 49 73.5
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 2.0e-13 79.3 49 71.4
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.6e-13 79.0 49 71.4
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.4e-13 78.6 49 73.5
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 3.4e-13 78.6 49 71.4
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 4.5e-13 78.2 49 73.5
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 5.9e-13 77.8 49 75.5
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 5.9e-13 77.8 49 71.4
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 7.6e-13 77.4 49 73.5
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 7.6e-13 77.4 49 73.5
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 7.6e-13 77.4 49 71.4
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.0e-12 77.0 49 67.3
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.0e-12 77.0 50 72.0
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 1.0e-12 77.0 49 67.3
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.3e-12 76.6 49 71.4
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.3e-12 76.6 49 71.4
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.3e-12 76.6 49 71.4
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.3e-12 76.6 49 71.4
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.3e-12 76.6 49 71.4
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.3e-12 76.6 49 65.3
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.7e-12 76.3 49 71.4
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.2e-12 75.9 49 73.5
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.8e-12 75.1 49 71.4
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 3.8e-12 75.1 49 71.4
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 3.8e-12 75.1 49 65.3
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 3.8e-12 75.1 49 65.3
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 5.0e-12 74.7 49 65.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 8.5e-12 73.9 49 67.3
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.1e-11 73.6 49 67.3
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.1e-11 73.6 49 69.4
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 4.2e-11 71.6 49 63.3
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 5.5e-11 71.2 49 67.3
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 7.2e-11 70.9 49 67.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 7.2e-11 70.9 49 67.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 7.2e-11 70.9 49 67.3
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 7.2e-11 70.9 49 67.3
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 7.2e-11 70.9 59 61.0
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 9.4e-11 70.5 49 67.3
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.2e-10 70.1 49 61.2
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.6e-10 69.7 49 65.3
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.6e-10 69.7 49 65.3
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.7e-10 68.9 49 65.3
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.7e-10 68.9 49 65.3
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 3.6e-10 68.6 44 70.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 4.6e-10 68.2 50 60.0
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.6e-10 68.2 49 59.2
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 4.6e-10 68.2 55 56.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 4.6e-10 68.2 49 63.3
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.1e-10 67.8 49 63.3
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 6.1e-10 67.8 49 65.3
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 7.9e-10 67.4 49 63.3
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.0e-09 67.0 39 76.9
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.0e-09 67.0 39 76.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.0e-09 67.0 49 63.3
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.4e-09 66.6 49 63.3
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.3e-09 65.9 49 59.2
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.3e-09 65.9 49 61.2
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.3e-09 65.9 49 61.2
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.0e-09 65.5 49 59.2
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 3.0e-09 65.5 49 63.3
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.9e-09 65.1 50 58.0
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.9e-09 65.1 49 57.1
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 3.9e-09 65.1 50 56.0
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 3.9e-09 65.1 49 57.1
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 5.1e-09 64.7 50 58.0
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 6.7e-09 64.3 49 61.2
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 8.8e-09 63.9 49 55.1
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.8e-09 63.9 39 74.4
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.1e-08 63.5 49 51.0
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.5e-08 63.2 49 65.3
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.5e-08 63.2 49 51.0
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.9e-08 62.8 50 50.0
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.3e-08 62.0 50 52.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 4.3e-08 61.6 41 75.6
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.3e-07 60.1 47 55.3


User provided reference genes

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