Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-297 1025.4 499 100.0
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.7e-280 967.2 499 93.6
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 4.0e-279 964.1 499 93.2
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-279 963.4 499 93.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-262 907.5 471 92.8
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.5e-260 900.6 497 87.3
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-258 896.3 467 92.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.9e-247 857.1 499 83.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-240 835.9 508 81.1
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.3e-218 762.3 441 83.0
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.6e-211 738.4 486 77.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 8.6e-197 690.6 477 71.1
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 6.8e-194 681.0 369 88.9
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.4e-185 652.1 466 66.5
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.8e-185 651.4 463 67.8
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.7e-184 649.8 466 66.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.1e-183 647.1 466 66.3
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 4.6e-182 641.7 468 66.2
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-182 641.7 471 67.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.6e-182 641.7 471 67.5
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-181 639.4 468 67.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 6.6e-181 637.9 468 67.5
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-180 636.7 468 67.3
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.0e-178 628.6 467 66.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 8.9e-178 627.5 467 65.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-177 626.7 467 65.5
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-177 625.9 473 65.8
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-176 623.2 470 66.4
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-176 622.9 467 65.5
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 2.1e-174 616.3 459 63.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.7e-174 615.9 466 64.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.7e-173 613.2 458 63.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-173 612.8 459 64.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 3.0e-173 612.5 459 61.9
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.0e-173 612.5 467 63.4
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.1e-172 610.5 459 63.0
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.6e-172 608.2 460 63.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.7e-171 605.1 460 62.8
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.8e-170 603.2 459 62.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 4.0e-170 602.1 460 63.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.5e-169 600.1 459 62.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.4e-169 598.6 459 61.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 7.6e-169 597.8 459 62.3
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 7.6e-169 597.8 459 62.3
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.9e-168 595.9 459 62.1
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.9e-168 595.1 459 61.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 4.9e-168 595.1 460 61.1
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 4.2e-167 592.0 464 64.0
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 3.5e-166 589.0 459 61.4
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.6e-166 588.6 459 61.2
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.6e-166 588.6 463 60.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 3.0e-165 585.9 459 61.0
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 3.9e-165 585.5 480 59.8
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.5e-164 583.6 467 59.7
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 7.3e-164 581.3 460 60.4
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.1e-163 579.7 443 62.3
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.8e-163 579.3 460 60.9
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 6.2e-163 578.2 467 60.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.8e-162 576.6 460 60.7
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.4e-162 576.2 458 59.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.2e-161 573.9 459 59.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.0e-161 573.2 432 61.6
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.6e-161 572.8 458 59.2
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.7e-160 570.1 459 59.3
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.9e-160 569.3 460 60.9
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.9e-160 569.3 460 58.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 4.9e-160 568.5 459 58.2
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 8.4e-160 567.8 459 59.0
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.9e-159 566.6 460 58.5
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.9e-159 566.6 458 59.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.4e-159 566.2 471 58.2
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.2e-158 563.9 459 58.2
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.7e-158 562.8 460 57.4
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.5e-158 562.4 459 57.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 4.6e-158 562.0 459 58.0
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 4.6e-158 562.0 459 58.4
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 6.0e-158 561.6 460 57.6
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.3e-157 559.7 460 57.6
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.0e-157 559.3 460 57.2
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.1e-157 558.5 459 57.5
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.5e-156 557.0 459 57.5
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 5.6e-156 555.1 411 64.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 9.6e-156 554.3 460 57.2
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.6e-155 552.4 464 57.5
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.6e-155 552.4 467 59.7
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 3.6e-155 552.4 459 59.3
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.4e-154 549.7 460 57.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.1e-154 549.3 463 56.4
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 4.0e-154 548.9 465 57.0
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 4.0e-154 548.9 459 59.3
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-154 548.1 441 60.8
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.5e-153 547.0 458 56.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-153 546.2 444 61.0
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 9.9e-153 544.3 464 58.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.9e-152 542.7 463 56.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 6.4e-152 541.6 431 59.9
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.9e-151 540.0 459 56.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 6.0e-150 535.0 431 60.3
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 4.3e-148 528.9 413 60.0
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 5.6e-148 528.5 460 56.3
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.9e-144 516.2 448 56.2
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 6.5e-144 515.0 459 54.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 7.1e-143 511.5 459 55.6
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 6.0e-142 508.4 451 53.0
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-141 506.5 446 59.0
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-141 506.5 387 63.6
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.3e-140 502.7 459 53.2
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.2e-137 494.2 459 51.4
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 5.8e-137 491.9 431 52.7
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 7.6e-137 491.5 435 56.1
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.5e-135 486.5 462 52.6
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 9.7e-132 474.6 481 53.6
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.2e-131 473.4 421 55.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 3.1e-130 469.5 457 50.5
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.2e-128 463.4 488 49.8
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.1e-126 456.8 459 52.1
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.3e-123 447.6 334 63.2
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.9e-119 433.7 371 56.1
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.3e-112 411.0 433 49.0
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.3e-107 392.1 504 42.1
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 7.7e-105 385.2 498 43.8
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-95 354.4 463 48.6
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.6e-94 350.9 464 41.6
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 6.8e-85 318.9 227 71.8
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 4.9e-83 312.8 222 71.6
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 3.9e-80 303.1 400 40.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 8.0e-78 295.4 228 62.7
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 2.9e-75 287.0 423 40.2
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-72 277.7 226 63.7
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 6.8e-69 265.8 191 66.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-68 263.8 191 65.4
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.6e-63 246.1 189 59.3
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 7.3e-63 245.7 262 47.7
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.8e-62 243.8 217 63.6
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.4e-59 232.6 201 57.7
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-58 231.9 181 68.0
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 5.6e-55 219.5 213 59.6
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 7.3e-55 219.2 217 58.5
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-52 210.7 128 80.5
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-51 207.2 316 41.8
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 7.8e-49 199.1 145 61.4
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-46 191.0 220 54.5
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.4e-43 179.5 118 81.4
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-34 151.8 111 65.8
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-34 151.4 269 36.1
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 4.2e-34 150.2 110 60.9
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-31 141.4 106 65.1
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 4.0e-29 133.7 145 55.2
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-28 131.3 145 53.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-26 125.2 189 39.7
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.2e-26 124.0 133 46.6
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-24 119.0 74 68.9
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-24 117.9 74 68.9
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-21 106.7 63 71.4
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.2e-20 105.5 93 60.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 2.6e-20 104.4 129 51.2
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 2.2e-19 101.3 145 44.1
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 3.8e-19 100.5 101 53.5
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 5.5e-18 96.7 91 54.9
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 7.2e-18 96.3 53 84.9
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.7e-17 94.4 54 74.1
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.8e-16 91.7 53 77.4
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.5e-15 88.6 105 44.8
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.3e-15 87.4 54 64.8
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 5.7e-15 86.7 79 54.4
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.6e-14 85.1 116 42.2
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 5.9e-12 76.6 40 87.5
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.7e-09 67.8 186 28.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.0e-08 64.3 176 28.4
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 6.7e-08 63.2 50 66.0
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 1.1e-07 62.4 47 70.2
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.3e-07 60.8 176 25.6
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 5.7e-07 60.1 40 70.0
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 9.7e-07 59.3 154 33.8
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.3e-06 58.9 47 51.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.2e-06 56.2 174 23.6


User provided reference genes

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