Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11965 Brassica carinata HOM05D009416 ORTHO05D014496 2.6e-127 458.8 232 100.0
C08p22220 Brassica napus HOM05D009416 ORTHO05D014496 1.6e-113 412.9 229 90.4
BolC8t49867H Brassica oleracea HOM05D009416 ORTHO05D014496 8.0e-113 410.6 229 90.0
BcaC07g39227 Brassica carinata HOM05D009416 ORTHO05D095777 1.2e-111 406.8 229 89.1
A08p27920 Brassica napus HOM05D009416 ORTHO05D014496 7.0e-109 397.5 229 88.2
BraA08t34723Z Brassica rapa HOM05D009416 ORTHO05D014496 7.0e-109 397.5 229 88.2
A04p17500 Brassica napus HOM05D009416 ORTHO05D024055 3.3e-58 229.2 239 53.6
BraA04t17373Z Brassica rapa HOM05D009416 ORTHO05D024055 7.3e-58 228.0 239 53.1
BolC4t26802H Brassica oleracea HOM05D009416 ORTHO05D024055 1.6e-57 226.9 239 53.1
C04p52250 Brassica napus HOM05D009416 ORTHO05D024478 4.7e-57 225.3 242 54.5
BcaC02g08587 Brassica carinata HOM05D009416 ORTHO05D024478 6.2e-57 224.9 242 54.1
BraA04t17372Z Brassica rapa HOM05D009416 ORTHO05D024478 1.5e-55 220.3 241 52.7
BolC4t26801H Brassica oleracea HOM05D009416 ORTHO05D024478 3.4e-55 219.2 242 53.3
A04p17490 Brassica napus HOM05D009416 ORTHO05D024478 4.4e-55 218.8 241 52.3
C04p52260 Brassica napus HOM05D009416 ORTHO05D024055 3.5e-52 209.1 233 51.9
BcaC02g08586 Brassica carinata HOM05D009416 ORTHO05D024055 1.1e-50 204.1 239 50.2
C08p22200 Brassica napus HOM05D009416 ORTHO05D014496 2.4e-48 196.4 232 48.7
BcaB03g11964 Brassica carinata HOM05D009416 ORTHO05D014496 1.7e-46 190.3 233 48.1
A08p27930 Brassica napus HOM05D009416 ORTHO05D014496 1.0e-43 181.0 232 47.0
BraA08t34724Z Brassica rapa HOM05D009416 ORTHO05D014496 1.0e-43 181.0 232 47.0
BolC8t49866H Brassica oleracea HOM05D009416 ORTHO05D014496 7.9e-36 154.8 214 44.9
Sp1g21300 Schrenkiella parvula HOM05D009416 ORTHO05D014496 6.9e-32 141.7 234 40.2
Sp1g28840 Schrenkiella parvula HOM05D009416 ORTHO05D014496 8.4e-30 134.8 193 42.0
BcaB07g32375 Brassica carinata HOM05D009416 ORTHO05D027760 5.9e-23 112.1 223 38.1
BcaC05g26299 Brassica carinata HOM05D009416 ORTHO05D027760 6.5e-22 108.6 209 34.9
Sp1g21320 Schrenkiella parvula HOM05D009416 ORTHO05D014496 7.4e-18 95.1 185 35.1
BcaB03g12680 Brassica carinata HOM05D031291 ORTHO05D027130 1.2e-15 87.8 170 38.2
Sp1g21280 Schrenkiella parvula HOM05D008804 ORTHO05D011259 2.1e-12 77.0 118 39.0
BcaB03g11961 Brassica carinata HOM05D008804 ORTHO05D011259 1.8e-11 73.9 116 37.1
BcaC07g39226 Brassica carinata HOM05D009416 ORTHO05D014496 1.5e-10 70.9 123 38.2
Sp1g21290 Schrenkiella parvula HOM05D008804 ORTHO05D011259 1.3e-09 67.8 113 37.2
BcaB03g14125 Brassica carinata HOM05D008804 ORTHO05D011259 1.7e-09 67.4 113 37.2
A08p27950 Brassica napus HOM05D008804 ORTHO05D011259 1.7e-09 67.4 116 36.2
C08p22180 Brassica napus HOM05D008804 ORTHO05D011259 1.7e-09 67.4 116 36.2
BolC8t49864H Brassica oleracea HOM05D008804 ORTHO05D011259 1.7e-09 67.4 116 36.2
BraA07t29120Z Brassica rapa HOM05D008804 ORTHO05D011259 1.7e-09 67.4 113 38.1
BraA08t34726Z Brassica rapa HOM05D008804 ORTHO05D011259 1.7e-09 67.4 116 36.2
A07p13490 Brassica napus HOM05D008804 ORTHO05D011259 2.2e-09 67.0 113 38.1
A08p27940 Brassica napus HOM05D008804 ORTHO05D011259 2.8e-09 66.6 113 35.4
BraA08t34725Z Brassica rapa HOM05D008804 ORTHO05D011259 2.8e-09 66.6 113 35.4
BcaB03g11962 Brassica carinata HOM05D008804 ORTHO05D011259 3.7e-09 66.2 113 36.3
C07p20130 Brassica napus HOM05D008804 ORTHO05D011259 6.3e-09 65.5 113 37.2
C07p25990 Brassica napus HOM05D008804 ORTHO05D011259 6.3e-09 65.5 113 37.2
BolC7t42534H Brassica oleracea HOM05D008804 ORTHO05D011259 6.3e-09 65.5 113 37.2
BolC7t43128H Brassica oleracea HOM05D008804 ORTHO05D011259 6.3e-09 65.5 113 37.2
C08p22190 Brassica napus HOM05D008804 ORTHO05D011259 8.2e-09 65.1 113 35.4
BolC8t49865H Brassica oleracea HOM05D008804 ORTHO05D011259 8.2e-09 65.1 113 35.4
A07p13680 Brassica napus HOM05D008804 ORTHO05D011259 1.4e-08 64.3 110 37.3
Thhalv10009502m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 1.4e-08 64.3 110 38.2
BcaC07g39224 Brassica carinata HOM05D008804 ORTHO05D011259 1.8e-08 63.9 113 34.5
BolC3t21129H Brassica oleracea HOM05D000417 ORTHO05D011116 1.8e-08 63.9 72 44.4
C03p88200 Brassica napus HOM05D000417 ORTHO05D011116 5.3e-08 62.4 72 44.4
BcaC05g26296 Brassica carinata HOM05D008804 ORTHO05D011259 9.1e-08 61.6 113 36.3
C05p23110 Brassica napus HOM05D008804 ORTHO05D011259 9.1e-08 61.6 113 36.3
BolC5t31010H Brassica oleracea HOM05D008804 ORTHO05D011259 9.1e-08 61.6 113 36.3
BolC5t31012H Brassica oleracea HOM05D008804 ORTHO05D011259 9.1e-08 61.6 113 36.3
A09p40860 Brassica napus HOM05D008804 ORTHO05D011259 1.2e-07 61.2 113 35.4
BraA09t39578Z Brassica rapa HOM05D008804 ORTHO05D011259 1.2e-07 61.2 113 35.4
BcaB07g32370 Brassica carinata HOM05D008804 ORTHO05D011259 3.4e-07 59.7 113 35.4
C03p88190 Brassica napus HOM05D031291 ORTHO05D027130 1.0e-06 58.2 103 39.8
BolC3t21128H Brassica oleracea HOM05D031291 ORTHO05D027130 1.0e-06 58.2 103 39.8
BcaC07g39223 Brassica carinata HOM05D008804 ORTHO05D011259 1.3e-06 57.8 79 40.5
Haze_10960 Corylus avellana HOM05D000197 ORTHO05D000114 1.3e-06 57.8 221 19.5
GSVIVG01011724001 Vitis vinifera HOM05D000197 ORTHO05D000114 5.0e-06 55.8 76 35.5
Aa31LG4G10180 Aethionema arabicum HOM05D000197 ORTHO05D000114 6.5e-06 55.5 205 23.9


User provided reference genes

Program Settings