Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11961 Brassica carinata HOM05D008804 ORTHO05D011259 1.8e-63 245.7 123 100.0
A08p27950 Brassica napus HOM05D008804 ORTHO05D011259 1.9e-52 209.1 116 91.4
BraA08t34726Z Brassica rapa HOM05D008804 ORTHO05D011259 1.9e-52 209.1 116 91.4
C08p22180 Brassica napus HOM05D008804 ORTHO05D011259 3.5e-51 204.9 116 88.8
BolC8t49864H Brassica oleracea HOM05D008804 ORTHO05D011259 3.5e-51 204.9 116 88.8
Sp1g21280 Schrenkiella parvula HOM05D008804 ORTHO05D011259 8.7e-50 200.3 123 81.3
BcaC07g39223 Brassica carinata HOM05D008804 ORTHO05D011259 1.0e-34 150.2 83 90.4
Sp1g21290 Schrenkiella parvula HOM05D008804 ORTHO05D011259 5.3e-31 137.9 123 61.0
BraA07t29120Z Brassica rapa HOM05D008804 ORTHO05D011259 2.9e-29 132.1 121 57.9
A08p27940 Brassica napus HOM05D008804 ORTHO05D011259 4.9e-29 131.3 124 57.3
BraA08t34725Z Brassica rapa HOM05D008804 ORTHO05D011259 4.9e-29 131.3 124 57.3
A07p13490 Brassica napus HOM05D008804 ORTHO05D011259 6.5e-29 131.0 121 57.0
C08p22190 Brassica napus HOM05D008804 ORTHO05D011259 1.1e-28 130.2 124 57.3
BolC8t49865H Brassica oleracea HOM05D008804 ORTHO05D011259 1.1e-28 130.2 124 57.3
C07p25990 Brassica napus HOM05D008804 ORTHO05D011259 1.4e-28 129.8 121 57.0
BolC7t43128H Brassica oleracea HOM05D008804 ORTHO05D011259 1.4e-28 129.8 121 57.0
BcaC07g39224 Brassica carinata HOM05D008804 ORTHO05D011259 2.5e-28 129.0 124 56.5
BcaB03g14125 Brassica carinata HOM05D008804 ORTHO05D011259 4.2e-28 128.3 121 55.4
BcaB03g11962 Brassica carinata HOM05D008804 ORTHO05D011259 9.3e-28 127.1 124 56.5
C07p20130 Brassica napus HOM05D008804 ORTHO05D011259 9.3e-28 127.1 121 56.2
BolC7t42534H Brassica oleracea HOM05D008804 ORTHO05D011259 9.3e-28 127.1 121 56.2
BcaB07g32370 Brassica carinata HOM05D008804 ORTHO05D011259 3.0e-26 122.1 124 54.8
BcaC05g26296 Brassica carinata HOM05D008804 ORTHO05D011259 3.0e-26 122.1 124 54.8
A09p40860 Brassica napus HOM05D008804 ORTHO05D011259 3.0e-26 122.1 124 54.8
C05p23110 Brassica napus HOM05D008804 ORTHO05D011259 3.0e-26 122.1 124 54.8
BolC5t31010H Brassica oleracea HOM05D008804 ORTHO05D011259 3.0e-26 122.1 124 54.8
BolC5t31012H Brassica oleracea HOM05D008804 ORTHO05D011259 3.0e-26 122.1 124 54.8
BraA09t39578Z Brassica rapa HOM05D008804 ORTHO05D011259 3.0e-26 122.1 120 55.8
A07p13680 Brassica napus HOM05D008804 ORTHO05D011259 5.7e-25 117.9 115 54.8
Thhalv10009502m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 1.9e-17 92.8 122 43.4
AT1G24000 Arabidopsis thaliana HOM05D008804 ORTHO05D011259 2.5e-17 92.4 122 41.8
Sp1g21300 Schrenkiella parvula HOM05D009416 ORTHO05D014496 3.3e-17 92.0 117 43.6
Sp1g28840 Schrenkiella parvula HOM05D009416 ORTHO05D014496 8.2e-16 87.4 114 43.0
A07p13480 Brassica napus HOM05D000197 ORTHO05D000114 2.4e-15 85.9 121 43.8
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 5.9e-14 81.3 156 37.8
AL1G37760 Arabidopsis lyrata HOM05D008804 ORTHO05D011259 1.0e-13 80.5 128 39.1
BcaB05g22564 Brassica carinata HOM05D008804 ORTHO05D011259 1.3e-13 80.1 83 53.0
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 1.7e-13 79.7 156 37.2
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 1.7e-13 79.7 156 37.2
BcaB03g11964 Brassica carinata HOM05D009416 ORTHO05D014496 2.9e-13 79.0 125 33.6
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 8.5e-13 77.4 156 36.5
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 8.5e-13 77.4 156 36.5
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 1.1e-12 77.0 156 35.9
BcaC05g26295 Brassica carinata HOM05D008804 ORTHO05D011259 1.4e-12 76.6 70 60.0
C08p22200 Brassica napus HOM05D009416 ORTHO05D014496 1.9e-12 76.3 125 34.4
BcaC07g39227 Brassica carinata HOM05D009416 ORTHO05D095777 2.5e-12 75.9 116 39.7
BolC8t49866H Brassica oleracea HOM05D009416 ORTHO05D014496 3.2e-12 75.5 125 36.0
A08p27930 Brassica napus HOM05D009416 ORTHO05D014496 4.2e-12 75.1 125 35.2
BraA08t34724Z Brassica rapa HOM05D009416 ORTHO05D014496 4.2e-12 75.1 125 35.2
Thhalv10009521m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 5.5e-12 74.7 59 61.0
BcaB03g11965 Brassica carinata HOM05D009416 ORTHO05D014496 7.2e-12 74.3 116 37.1
C08p22220 Brassica napus HOM05D009416 ORTHO05D014496 7.2e-12 74.3 116 38.8
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.6e-11 73.2 156 34.0
BolC8t49867H Brassica oleracea HOM05D009416 ORTHO05D014496 3.6e-11 72.0 116 37.9
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 3.6e-11 72.0 156 35.3
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 4.7e-11 71.6 156 34.6
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 4.7e-11 71.6 156 34.6
AT1G23910 Arabidopsis thaliana HOM05D008804 ORTHO05D011259 6.1e-11 71.2 73 49.3
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 7.9e-11 70.9 156 34.6
Sp1g21350 Schrenkiella parvula HOM05D000197 ORTHO05D000114 7.9e-11 70.9 85 44.7
Sp1g21330 Schrenkiella parvula HOM05D008804 ORTHO05D021419 6.7e-10 67.8 142 35.2
A08p27920 Brassica napus HOM05D009416 ORTHO05D014496 1.1e-09 67.0 116 36.2
BraA08t34723Z Brassica rapa HOM05D009416 ORTHO05D014496 1.1e-09 67.0 116 36.2
BcaC02g08586 Brassica carinata HOM05D009416 ORTHO05D024055 4.4e-09 65.1 118 33.9
BolC4t26802H Brassica oleracea HOM05D009416 ORTHO05D024055 4.4e-09 65.1 118 33.9
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.3e-08 63.5 156 30.1
C04p52250 Brassica napus HOM05D009416 ORTHO05D024478 1.7e-08 63.2 121 37.2
BcaC02g08587 Brassica carinata HOM05D009416 ORTHO05D024478 2.2e-08 62.8 119 36.1
Haze_10953 Corylus avellana HOM05D000197 ORTHO05D000114 2.2e-08 62.8 115 29.6
C04p52260 Brassica napus HOM05D009416 ORTHO05D024055 4.8e-08 61.6 109 36.7
BolC4t26801H Brassica oleracea HOM05D009416 ORTHO05D024478 4.8e-08 61.6 121 36.4
BraA04t17372Z Brassica rapa HOM05D009416 ORTHO05D024478 4.8e-08 61.6 121 37.2
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 6.3e-08 61.2 86 36.0
BolC3t21129H Brassica oleracea HOM05D000417 ORTHO05D011116 8.2e-08 60.8 78 42.3
BcaB03g14846 Brassica carinata HOM05D000197 ORTHO05D000114 1.1e-07 60.5 86 37.2
Prupe.1G328800 Prunus persica HOM05D000197 ORTHO05D000114 1.1e-07 60.5 151 29.8
THA.LOC104822191 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 1.1e-07 60.5 86 40.7
A04p17490 Brassica napus HOM05D009416 ORTHO05D024478 1.4e-07 60.1 121 36.4
Cpa.g.c36659 Carica papaya HOM05D000197 ORTHO05D000114 1.4e-07 60.1 155 28.4
Aa31LG4G10180 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.8e-07 59.7 94 35.1
C03p88200 Brassica napus HOM05D000417 ORTHO05D011116 2.4e-07 59.3 78 42.3
A04p17500 Brassica napus HOM05D009416 ORTHO05D024055 4.1e-07 58.5 110 34.5
BraA04t17373Z Brassica rapa HOM05D009416 ORTHO05D024055 4.1e-07 58.5 110 34.5
Sp5g26010 Schrenkiella parvula HOM05D000197 ORTHO05D000114 5.3e-07 58.2 102 33.3
Cpa.g.c30095.2 Carica papaya HOM05D000197 ORTHO05D000114 7.0e-07 57.8 155 27.7
arahy.Tifrunner.gnm1.ann1.WH3HWC Arachis hypogaea HOM05D000197 ORTHO05D000114 9.1e-07 57.4 154 24.7
Carub.0008s0722 Capsella rubella HOM05D008804 ORTHO05D021419 9.1e-07 57.4 143 32.9
QL03p033671 Quercus lobata HOM05D000197 ORTHO05D000114 9.1e-07 57.4 155 27.7
AL1G38850 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 1.2e-06 57.0 87 36.8
BcaC03g15239 Brassica carinata HOM05D000197 ORTHO05D000114 1.2e-06 57.0 86 36.0
A02p16920 Brassica napus HOM05D000197 ORTHO05D000114 1.2e-06 57.0 86 36.0
C02p28280 Brassica napus HOM05D000197 ORTHO05D000114 1.2e-06 57.0 86 36.0
BraA02t06744Z Brassica rapa HOM05D000197 ORTHO05D000114 1.2e-06 57.0 86 36.0
Thhalv10019454m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 1.2e-06 57.0 96 34.4
Sed0020136 Sechium edule HOM05D000197 ORTHO05D000114 1.2e-06 57.0 87 33.3
arahy.Tifrunner.gnm1.ann1.02ERGG Arachis hypogaea HOM05D000197 ORTHO05D000114 1.5e-06 56.6 154 25.3
Carub.0002s1758 Capsella rubella HOM05D000197 ORTHO05D000114 1.5e-06 56.6 86 34.9
BcaB03g15569 Brassica carinata HOM05D000197 ORTHO05D000114 2.0e-06 56.2 95 34.7
A08p28370 Brassica napus HOM05D000197 ORTHO05D000114 2.0e-06 56.2 102 32.4
BraA08t34767Z Brassica rapa HOM05D000197 ORTHO05D000114 2.0e-06 56.2 102 32.4
Haze_10956 Corylus avellana HOM05D000197 ORTHO05D000114 2.0e-06 56.2 142 27.5
BcaC08g46532 Brassica carinata HOM05D000197 ORTHO05D000114 2.6e-06 55.8 94 33.0
Carub.0002s1760 Capsella rubella HOM05D000197 ORTHO05D000114 2.6e-06 55.8 102 33.3
CARHR064140 Cardamine hirsuta HOM05D000197 ORTHO05D000114 2.6e-06 55.8 86 34.9
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 2.6e-06 55.8 83 36.1
AL2G30320 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 3.4e-06 55.5 94 33.0
BcaB03g15570 Brassica carinata HOM05D000197 ORTHO05D000114 3.4e-06 55.5 101 34.7
BcaB03g15577 Brassica carinata HOM05D000197 ORTHO05D000114 3.4e-06 55.5 95 33.7
Gohir.D02G170200 Gossypium hirsutum HOM05D000197 ORTHO05D000114 3.4e-06 55.5 101 31.7
Prupe.1G329000 Prunus persica HOM05D000197 ORTHO05D000114 3.4e-06 55.5 82 36.6
RcHm_v2.0_Chr4g0441751 Rosa chinensis HOM05D000197 ORTHO05D000114 3.4e-06 55.5 139 26.6
BolC6t39553H Brassica oleracea HOM05D000197 ORTHO05D000114 4.5e-06 55.1 86 34.9
CANSAT64G1171 Cannabis sativa HOM05D000197 ORTHO05D000114 4.5e-06 55.1 78 35.9
CARHR064110 Cardamine hirsuta HOM05D000197 ORTHO05D000114 4.5e-06 55.1 102 32.4
BcaB03g14848 Brassica carinata HOM05D000197 ORTHO05D000114 5.9e-06 54.7 94 33.0
BcaB03g15584 Brassica carinata HOM05D000197 ORTHO05D000114 5.9e-06 54.7 86 34.9
BcaC07g39183 Brassica carinata HOM05D000197 ORTHO05D000114 5.9e-06 54.7 102 32.4
C02p28330 Brassica napus HOM05D000197 ORTHO05D000114 5.9e-06 54.7 126 31.0
C06p44930 Brassica napus HOM05D000197 ORTHO05D000114 5.9e-06 54.7 94 33.0
C08p21730 Brassica napus HOM05D000197 ORTHO05D000114 5.9e-06 54.7 102 32.4
BolC8t49811H Brassica oleracea HOM05D000197 ORTHO05D000114 5.9e-06 54.7 102 32.4
FvH4_4g32750 Fragaria vesca HOM05D000197 ORTHO05D000114 5.9e-06 54.7 86 33.7
BcaC03g15249 Brassica carinata HOM05D000197 ORTHO05D000114 7.7e-06 54.3 125 28.8
Gorai.005G190800 Gossypium raimondii HOM05D000197 ORTHO05D000114 7.7e-06 54.3 101 31.7
Gorai.005G191000 Gossypium raimondii HOM05D000197 ORTHO05D000114 7.7e-06 54.3 101 31.7
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 7.7e-06 54.3 68 38.2
Sp1g21310 Schrenkiella parvula HOM05D008804 ORTHO05D021419 7.7e-06 54.3 139 27.3


User provided reference genes

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