Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 2.1e-61 238.8 120 100.0
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.5e-27 125.2 99 72.7
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-23 113.2 95 65.3
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-23 113.2 95 65.3
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 4.0e-23 111.7 91 67.0
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.3e-21 106.7 97 63.9
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.2e-21 105.9 99 62.6
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.4e-20 102.4 102 59.8
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-20 102.4 97 61.9
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.0e-19 99.4 94 61.7
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-16 89.7 77 62.3
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 3.6e-16 88.6 77 62.3
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 6.1e-16 87.8 77 61.0
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 6.1e-16 87.8 77 61.0
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 8.0e-16 87.4 95 55.8
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 8.0e-16 87.4 95 55.8
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 1.0e-15 87.0 96 55.2
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.0e-15 87.0 95 55.8
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.4e-15 86.7 95 55.8
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 6.8e-15 84.3 94 52.1
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 8.8e-15 84.0 94 51.1
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 8.8e-15 84.0 94 51.1
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 8.8e-15 84.0 94 51.1
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 3.4e-14 82.0 103 49.5
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 7.5e-14 80.9 96 55.2
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 9.8e-14 80.5 95 49.5
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 9.8e-14 80.5 94 53.2
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 9.8e-14 80.5 94 53.2
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 9.8e-14 80.5 94 53.2
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.7e-13 79.7 99 51.5
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.8e-13 79.0 94 51.1
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 2.8e-13 79.0 94 48.9
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 2.8e-13 79.0 97 48.5
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.7e-13 78.6 98 51.0
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 4.8e-13 78.2 94 48.9
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 4.8e-13 78.2 96 52.1
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 4.8e-13 78.2 103 48.5
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 6.3e-13 77.8 94 53.2
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.4e-12 76.6 102 50.0
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-12 76.6 118 44.1
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.4e-12 75.9 97 46.4
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 5.4e-12 74.7 112 44.6
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 5.4e-12 74.7 112 44.6
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 5.4e-12 74.7 112 44.6
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 9.1e-12 73.9 118 43.2
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.1e-12 73.9 101 49.5
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.1e-12 73.9 99 49.5
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.2e-11 73.6 101 46.5
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.0e-11 72.8 104 44.2
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.5e-11 71.6 96 46.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 5.9e-11 71.2 105 45.7
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 7.7e-11 70.9 96 46.9
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 2.3e-10 69.3 100 47.0
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 2.3e-10 69.3 100 43.0
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 2.9e-10 68.9 106 43.4
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.8e-10 68.6 102 44.1
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 5.0e-10 68.2 58 56.9
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 5.0e-10 68.2 104 43.3
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 8.6e-10 67.4 58 56.9
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.5e-09 66.6 58 55.2
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.5e-09 65.9 56 55.4
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 3.3e-09 65.5 39 71.8
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 3.3e-09 65.5 94 45.7
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 5.5e-09 64.7 98 43.9
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 5.5e-09 64.7 96 42.7
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 5.5e-09 64.7 102 42.2
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 7.2e-09 64.3 41 68.3
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 7.2e-09 64.3 39 69.2
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 9.5e-09 63.9 102 42.2
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.5e-09 63.9 98 45.9
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 2.1e-08 62.8 96 40.6
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 2.1e-08 62.8 39 69.2
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.8e-08 62.4 47 63.8
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 2.8e-08 62.4 100 43.0
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.7e-08 61.6 94 42.6
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.7e-08 61.6 98 44.9
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 4.7e-08 61.6 110 41.8
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 6.1e-08 61.2 56 57.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.1e-08 61.2 101 41.6
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 6.1e-08 61.2 100 43.0
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.1e-08 61.2 95 41.1
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 6.1e-08 61.2 39 66.7
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 1.0e-07 60.5 100 39.0
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.0e-07 60.5 94 42.6
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.0e-07 60.5 39 66.7
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.4e-07 60.1 52 55.8
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.4e-07 60.1 39 64.1
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.4e-07 60.1 101 44.6
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.4e-07 60.1 100 39.0
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 1.4e-07 60.1 105 40.0
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 1.8e-07 59.7 61 49.2
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 2.3e-07 59.3 64 46.9
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 5.2e-07 58.2 98 44.9
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 5.2e-07 58.2 40 60.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.2e-07 58.2 49 51.0
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 6.8e-07 57.8 58 53.4
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 8.9e-07 57.4 102 40.2
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 8.9e-07 57.4 58 51.7
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 8.9e-07 57.4 98 38.8
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 8.9e-07 57.4 95 42.1
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.2e-06 57.0 49 51.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.2e-06 57.0 98 39.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.2e-06 57.0 39 59.0
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.5e-06 56.6 94 38.3
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.5e-06 56.6 48 52.1
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.5e-06 56.6 94 38.3
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.5e-06 56.6 96 41.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 2.0e-06 56.2 100 38.0
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 3.4e-06 55.5 54 51.9
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.4e-06 55.5 60 50.0
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.4e-06 55.1 44 52.3


User provided reference genes

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