Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-139 499.6 249 100.0
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.9e-97 358.6 188 93.6
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.9e-97 358.6 188 93.6
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.7e-95 351.7 188 92.0
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.7e-95 351.7 188 92.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 4.7e-95 351.7 188 92.0
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 7.0e-91 337.8 189 88.9
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.6e-87 326.6 193 87.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.6e-87 326.6 190 87.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-87 325.9 188 86.7
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-87 325.9 188 86.7
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-87 325.9 188 86.7
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-87 325.5 188 86.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.7e-87 325.1 188 85.6
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 8.1e-87 324.3 188 86.2
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.4e-85 318.5 191 85.9
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-83 313.2 192 85.4
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-83 313.2 192 85.4
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-83 313.2 192 85.4
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-83 312.8 191 85.9
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 2.4e-83 312.8 192 85.9
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 2.4e-83 312.8 192 85.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 3.2e-83 312.4 189 85.2
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 5.4e-83 311.6 193 82.9
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 6.6e-81 304.7 194 82.0
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.5e-48 196.4 198 57.6
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.2e-45 187.6 208 52.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.1e-41 172.2 202 50.0
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.3e-39 167.5 204 52.0
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.2e-39 166.8 205 48.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.2e-39 166.8 196 47.4
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.7e-39 166.0 202 50.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-38 164.5 197 50.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.5e-37 159.1 203 49.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-36 157.9 202 49.5
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.0e-36 157.9 202 49.5
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.0e-36 157.9 181 49.2
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-36 156.4 188 49.5
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.8e-36 156.0 188 49.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 8.5e-36 154.8 198 47.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.4e-35 154.1 188 48.4
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.9e-35 153.7 188 49.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.5e-35 153.3 202 49.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 3.2e-35 152.9 187 49.2
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 4.2e-35 152.5 222 44.1
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 4.2e-35 152.5 214 45.8
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.2e-35 152.5 220 40.9
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 9.4e-35 151.4 214 47.7
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 9.4e-35 151.4 179 48.6
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.2e-34 151.0 192 45.8
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.1e-34 150.2 210 44.3
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.7e-34 149.8 198 46.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.7e-34 149.8 168 51.8
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 7.9e-34 148.3 189 46.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.0e-33 147.9 217 46.1
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.0e-33 147.9 202 43.6
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.8e-33 147.1 183 50.8
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-33 147.1 210 43.8
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.3e-33 146.7 213 45.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-33 146.7 210 43.3
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.3e-33 146.7 202 45.5
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 3.0e-33 146.4 205 43.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 3.9e-33 146.0 203 44.3
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.9e-33 146.0 185 45.9
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 5.1e-33 145.6 193 45.1
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 8.8e-33 144.8 198 44.4
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 8.8e-33 144.8 198 44.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 8.8e-33 144.8 184 46.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 8.8e-33 144.8 195 45.1
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 8.8e-33 144.8 207 46.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.1e-32 144.4 193 46.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.5e-32 143.3 202 44.1
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.5e-32 143.3 199 45.7
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 4.3e-32 142.5 195 46.2
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 9.7e-32 141.4 197 46.7
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-31 140.6 202 43.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-31 140.6 202 43.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.7e-31 140.6 196 42.9
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.8e-31 139.8 201 44.8
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.7e-31 139.4 192 42.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.7e-31 139.4 180 48.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.7e-31 139.4 209 42.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 4.8e-31 139.0 213 44.1
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 6.3e-31 138.7 195 45.6
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 8.2e-31 138.3 190 44.7
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 8.2e-31 138.3 210 43.8
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.8e-30 137.1 209 41.1
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.5e-29 134.0 210 41.9
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-29 133.7 188 39.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-29 133.7 176 46.6
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.9e-29 132.1 192 41.7
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.2e-28 130.2 227 41.9
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.2e-28 130.2 203 43.8
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.9e-28 129.8 223 36.8
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 6.5e-28 128.6 222 36.9
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 6.5e-28 128.6 224 40.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 6.5e-28 128.6 201 41.3
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 8.5e-28 128.3 194 40.7
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.4e-27 127.5 199 42.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.4e-27 127.5 217 39.6
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.5e-27 126.7 182 44.0
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 7.2e-27 125.2 219 41.1
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.2e-27 125.2 191 42.4
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 7.2e-27 125.2 178 42.1
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 9.4e-27 124.8 206 41.3
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.6e-26 124.0 180 42.8
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.6e-26 124.0 234 39.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.1e-26 123.6 199 42.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.1e-26 123.6 172 43.6
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.6e-26 122.9 208 40.9
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.7e-26 122.5 237 38.0
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.3e-25 120.2 168 44.0
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.0e-25 119.8 168 43.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 3.9e-25 119.4 199 40.7
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.9e-25 119.4 197 38.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.1e-25 119.0 195 41.5
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 8.8e-25 118.2 206 40.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 8.8e-25 118.2 188 39.9
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.6e-24 116.7 196 41.8
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 4.4e-24 115.9 218 37.2
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 4.4e-24 115.9 191 38.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.4e-24 115.2 175 41.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.7e-23 112.8 214 37.9
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.1e-22 111.3 191 40.3
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.1e-22 111.3 182 45.1
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-22 111.3 139 47.5
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.4e-22 110.2 240 37.1
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-22 110.2 178 40.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 3.1e-22 109.8 245 34.7
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.3e-22 109.0 231 41.6
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.2e-21 107.8 177 36.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.5e-21 107.5 171 38.6
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.4e-21 106.3 181 35.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.7e-21 105.1 163 40.5
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.7e-20 104.0 163 40.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 5.0e-20 102.4 138 45.7
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.5e-20 102.1 178 34.8
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 7.2e-19 98.6 170 36.5
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 9.4e-19 98.2 176 40.9
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.1e-18 97.1 119 49.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 2.1e-18 97.1 254 32.7
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-18 96.3 160 40.0
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 3.6e-18 96.3 160 40.0
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.6e-18 96.3 161 40.4
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.8e-17 94.0 176 35.8
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-17 93.6 160 40.0
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-17 93.6 160 40.0
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.0e-17 93.2 160 39.4
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 5.2e-17 92.4 170 39.4
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 4.4e-16 89.4 150 39.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 9.7e-16 88.2 100 47.0
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.7e-15 87.4 190 36.8
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.7e-15 86.3 188 36.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.8e-15 85.9 160 38.8
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.3e-15 85.5 102 50.0
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.4e-14 84.3 183 35.5
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.4e-14 84.3 186 32.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.4e-14 83.6 189 36.5
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.6e-13 80.9 209 30.1
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 3.5e-13 79.7 189 33.3
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 7.7e-13 78.6 97 45.4
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.8e-12 76.3 179 34.1
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.2e-11 72.0 108 37.0
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 2.1e-10 70.5 205 31.7
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 3.0e-09 66.6 166 34.3
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.7e-07 60.8 91 38.5
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.7e-07 60.8 88 39.8
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 8.2e-07 58.5 71 49.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.1e-06 58.2 178 28.7
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.1e-06 58.2 97 38.1


User provided reference genes

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