Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 9.8e-236 819.7 400 100.0
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 2.2e-187 659.1 402 84.8
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 4.9e-187 657.9 389 84.8
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 5.5e-186 654.4 389 84.6
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 1.2e-185 653.3 396 83.6
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 3.0e-184 648.7 399 83.7
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 1.3e-182 643.3 396 83.1
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 1.5e-138 496.9 314 81.2
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 1.1e-117 427.6 251 85.7
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 8.6e-115 417.9 396 60.9
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.0e-99 366.3 401 51.6
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.2e-93 346.3 406 51.0
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.7e-92 343.2 406 51.0
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-89 334.3 376 51.9
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 4.8e-89 332.4 376 51.6
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.1e-88 329.7 398 49.7
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.2e-85 319.7 405 47.2
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 3.5e-84 316.2 377 48.3
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 4.3e-82 309.3 382 49.0
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 7.4e-82 308.5 347 51.0
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 7.4e-82 308.5 298 58.1
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 1.5e-79 300.8 414 44.7
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 1.3e-73 281.2 277 58.8
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.1e-66 258.1 343 47.2
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.6e-63 246.9 406 41.4
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 5.9e-63 245.7 182 69.2
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 2.5e-61 240.4 408 38.5
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.0e-59 235.0 372 40.3
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.3e-59 234.6 409 38.1
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 3.9e-59 233.0 363 41.9
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 9.0e-56 221.9 262 49.6
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 2.2e-54 217.2 402 37.3
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.8e-54 216.5 403 38.7
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.9e-53 214.2 370 40.8
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 9.4e-53 211.8 394 37.1
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.6e-52 209.9 394 39.1
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 8.8e-51 205.3 351 41.6
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.6e-50 203.8 222 52.7
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 5.7e-50 202.6 388 36.3
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 5.7e-50 202.6 388 36.3
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 9.7e-50 201.8 372 38.2
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-49 201.4 388 36.1
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 3.7e-49 199.9 388 35.8
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.7e-49 199.9 371 36.7
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 1.8e-48 197.6 388 36.1
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.2e-47 194.9 401 36.7
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 2.6e-47 193.7 382 33.2
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 2.9e-46 190.3 409 36.2
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.9e-46 190.3 320 41.9
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 6.5e-46 189.1 115 82.6
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 8.5e-46 188.7 396 36.9
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 2.5e-45 187.2 394 36.3
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 2.5e-45 187.2 394 36.3
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 3.2e-45 186.8 405 36.3
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 2.1e-44 184.1 405 36.3
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 3.6e-44 183.3 302 43.0
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 6.1e-44 182.6 365 35.1
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-43 180.6 387 33.9
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 3.0e-43 180.3 373 34.6
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-42 178.3 373 34.6
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 9.1e-40 168.7 370 35.1
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 3.8e-38 163.3 384 33.6
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.0e-35 155.2 322 35.4
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.7e-34 149.4 181 49.7
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 9.7e-34 148.7 318 33.6
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 4.8e-33 146.4 308 33.8
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 6.3e-33 146.0 393 32.1
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.4e-32 144.1 400 29.8
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 9.1e-32 142.1 230 37.4
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 7.7e-31 139.0 365 31.5
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.3e-30 138.3 366 29.5
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 3.8e-30 136.7 257 40.9
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 6.5e-30 136.0 352 30.1
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.6e-28 131.3 324 33.6
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.1e-24 117.1 82 70.7
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.1e-24 116.7 324 30.9
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 1.2e-23 115.2 189 39.2
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 2.0e-23 114.4 206 39.3
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 2.0e-23 114.4 206 39.3
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.0e-23 114.4 261 37.5
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 7.7e-23 112.5 63 88.9
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.5e-21 108.2 189 36.5
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 7.2e-21 105.9 326 30.1
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.7e-18 96.3 330 27.0
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 5.7e-18 96.3 419 27.4
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 2.7e-15 87.4 102 42.2
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.1e-13 82.0 132 37.1
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 7.3e-13 79.3 117 43.6
BcaB03g12779 Brassica carinata HOM05D007494 ORTHO05D009621 4.7e-12 76.6 61 72.1
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 6.8e-11 72.8 365 23.6
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 8.9e-11 72.4 103 38.8
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 7.5e-10 69.3 85 43.5
QL05p078700 Quercus lobata HOM05D000007 ORTHO05D000017 7.8e-07 59.3 347 24.2
PGSC0003DMG400015282 Solanum tuberosum HOM05D008697 ORTHO05D010866 1.0e-06 58.9 303 25.1
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 3.0e-06 57.4 45 62.2
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 3.0e-06 57.4 42 64.3
BcaC01g05840 Brassica carinata HOM05D007494 ORTHO05D009621 3.9e-06 57.0 75 44.0
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 3.9e-06 57.0 321 22.4
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 3.9e-06 57.0 152 28.9
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 5.0e-06 56.6 74 45.9
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 8.6e-06 55.8 254 26.8


User provided reference genes

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