Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 3.6e-61 238.0 119 100.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.4e-43 178.3 103 88.3
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 7.6e-43 177.2 103 87.4
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.9e-42 175.3 103 86.4
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 6.4e-42 174.1 103 85.4
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.1e-38 163.3 108 76.9
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.5e-38 162.2 103 77.7
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.5e-38 162.2 111 73.9
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.3e-38 161.8 108 76.9
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.3e-38 161.8 103 78.6
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 4.3e-38 161.4 103 78.6
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.4e-38 160.6 103 77.7
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.3e-37 159.8 103 77.7
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.6e-37 159.5 103 76.7
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.6e-37 159.5 109 72.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.8e-37 158.7 109 73.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.8e-37 158.7 109 73.4
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.8e-37 158.7 105 76.2
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 3.7e-37 158.3 104 76.9
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 3.7e-37 158.3 109 72.5
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.7e-37 158.3 103 75.7
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.8e-37 157.9 103 76.7
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 4.8e-37 157.9 104 76.0
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.2e-37 157.5 103 75.7
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.2e-37 157.5 105 77.1
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.1e-36 156.8 104 75.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.1e-36 156.8 103 75.7
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.4e-36 156.4 106 74.5
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.4e-36 156.4 106 74.5
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.4e-36 156.4 103 75.7
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.4e-36 156.4 103 75.7
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.8e-36 156.0 102 79.4
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.8e-36 156.0 103 75.7
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.8e-36 156.0 112 68.8
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.8e-36 156.0 112 67.9
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.8e-36 156.0 103 76.7
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 3.1e-36 155.2 105 75.2
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 5.3e-36 154.5 109 69.7
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 6.9e-36 154.1 104 74.0
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 6.9e-36 154.1 105 75.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 9.0e-36 153.7 109 69.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 9.0e-36 153.7 109 69.7
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 9.0e-36 153.7 103 73.8
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-35 153.3 105 74.3
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.2e-35 153.3 103 73.8
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.2e-35 153.3 106 71.7
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.5e-35 152.9 105 74.3
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.5e-35 152.9 103 74.8
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.0e-35 152.5 108 74.1
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.0e-35 152.5 98 76.5
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.0e-35 152.5 103 73.8
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.6e-35 152.1 112 67.9
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.6e-35 152.1 111 68.5
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.6e-35 152.1 98 76.5
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.6e-35 152.1 104 72.1
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.6e-35 152.1 103 74.8
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.4e-35 151.8 103 74.8
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.5e-35 151.4 105 73.3
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 4.5e-35 151.4 109 71.6
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 5.8e-35 151.0 105 74.3
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 5.8e-35 151.0 103 74.8
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.8e-35 151.0 103 74.8
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 5.8e-35 151.0 104 74.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 5.8e-35 151.0 104 74.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 7.6e-35 150.6 111 67.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 7.6e-35 150.6 104 70.2
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.0e-34 150.2 104 71.2
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.0e-34 150.2 104 71.2
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.3e-34 149.8 103 72.8
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.7e-34 149.4 103 73.8
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-34 149.4 103 73.8
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-34 149.4 103 73.8
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-34 149.4 103 73.8
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-34 149.4 103 73.8
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-34 149.4 112 65.2
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-34 149.4 112 65.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.2e-34 149.1 105 73.3
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 2.9e-34 148.7 104 71.2
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.9e-34 148.7 112 64.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 3.8e-34 148.3 112 66.1
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.8e-34 148.3 112 64.3
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.4e-34 147.1 106 71.7
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-33 146.7 103 72.8
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.1e-33 146.7 108 71.3
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.4e-33 146.4 112 63.4
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.4e-33 146.4 104 70.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 2.5e-33 145.6 111 64.9
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 3.2e-33 145.2 112 65.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 5.5e-33 144.4 103 69.9
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 5.5e-33 144.4 112 64.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.2e-32 143.3 103 69.9
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.2e-32 143.3 108 67.6
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.1e-32 142.5 103 69.9
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.7e-32 142.1 103 68.9
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 6.0e-32 141.0 105 69.5
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 6.0e-32 141.0 109 65.1
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 6.0e-32 141.0 111 64.0
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 6.0e-32 141.0 108 68.5
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 6.0e-32 141.0 112 61.6
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.0e-31 140.2 112 63.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.0e-31 140.2 103 69.9
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.3e-31 139.0 103 68.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.3e-31 139.0 108 65.7
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.1e-30 136.7 104 66.3
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 3.7e-29 131.7 93 69.9
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 4.1e-28 128.3 155 47.7
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.1e-28 128.3 90 72.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.5e-27 124.8 103 68.9
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.3e-26 123.2 83 73.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.4e-20 103.2 74 73.0
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.4e-20 103.2 89 58.4
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.1e-20 102.1 85 60.0
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 2.0e-19 99.4 104 53.8
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.4e-19 98.6 61 72.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.5e-18 94.4 62 74.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.5e-18 94.0 62 77.4
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 8.5e-18 94.0 90 55.6
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.5e-14 82.4 65 64.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.8e-13 78.2 65 63.1
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 8.5e-10 67.4 82 43.9
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 8.5e-10 67.4 61 49.2
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.9e-09 66.2 48 72.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 7.9e-08 60.8 51 66.7
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.0e-07 58.9 40 62.5


User provided reference genes

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