Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11583 Brassica carinata HOM05D001507 ORTHO05D002108 6.3e-64 247.3 125 100.0
BcaB07g33129 Brassica carinata HOM05D001507 ORTHO05D002108 1.8e-26 122.9 71 85.9
A03p24900 Brassica napus HOM05D001507 ORTHO05D002108 4.3e-20 101.7 74 67.6
BcaC01g00284 Brassica carinata HOM05D001507 ORTHO05D002108 5.6e-20 101.3 76 69.7
C03p77630 Brassica napus HOM05D001507 ORTHO05D002108 5.6e-20 101.3 76 69.7
BolC3t20020H Brassica oleracea HOM05D001507 ORTHO05D002108 5.6e-20 101.3 76 69.7
BraA09t39840Z Brassica rapa HOM05D001507 ORTHO05D002108 1.6e-19 99.8 74 66.2
A07p06890 Brassica napus HOM05D001507 ORTHO05D002108 2.1e-19 99.4 74 66.2
BraA08t34332Z Brassica rapa HOM05D001507 ORTHO05D002108 3.6e-19 98.6 76 67.1
A08p23800 Brassica napus HOM05D001507 ORTHO05D002108 4.4e-17 91.7 76 65.8
Aa31LG6G16120 Aethionema arabicum HOM05D001507 ORTHO05D002108 8.3e-16 87.4 69 65.2
CARHR247610 Cardamine hirsuta HOM05D001507 ORTHO05D002108 5.4e-15 84.7 69 65.2
BcaB03g12245 Brassica carinata HOM05D001507 ORTHO05D002108 1.2e-14 83.6 74 66.2
C01p00370 Brassica napus HOM05D001507 ORTHO05D002108 1.6e-14 83.2 67 64.2
BolC1t00043H Brassica oleracea HOM05D001507 ORTHO05D002108 1.6e-14 83.2 67 64.2
BcaNung01277 Brassica carinata HOM05D001507 ORTHO05D002108 7.8e-14 80.9 73 61.6
Thhalv10025282m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 1.3e-13 80.1 69 60.9
AT4G39140 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 2.3e-13 79.3 69 60.9
Sp7g36680 Schrenkiella parvula HOM05D001507 ORTHO05D002108 2.3e-13 79.3 68 63.2
AL7G11080 Arabidopsis lyrata HOM05D001507 ORTHO05D002108 3.0e-13 79.0 69 60.9
A01p00260 Brassica napus HOM05D001507 ORTHO05D002108 3.0e-13 79.0 72 61.1
C02p52420 Brassica napus HOM05D001507 ORTHO05D002108 3.9e-13 78.6 77 57.1
BraA01t00033Z Brassica rapa HOM05D001507 ORTHO05D002108 8.6e-13 77.4 69 62.3
THA.LOC104807750 Tarenaya hassleriana HOM05D001507 ORTHO05D002108 3.3e-12 75.5 69 60.9
AL4G10680 Arabidopsis lyrata HOM05D001507 ORTHO05D002108 2.8e-11 72.4 74 54.1
Aa31LG7G15030 Aethionema arabicum HOM05D001507 ORTHO05D002108 1.1e-10 70.5 69 58.0
Carub.0007s0102 Capsella rubella HOM05D001507 ORTHO05D002108 1.8e-10 69.7 76 50.0
THA.LOC104804124 Tarenaya hassleriana HOM05D001507 ORTHO05D002108 1.8e-10 69.7 66 57.6
BcaC07g41149 Brassica carinata HOM05D001507 ORTHO05D002108 2.3e-10 69.3 69 58.0
Carub.0004s0054 Capsella rubella HOM05D001507 ORTHO05D002108 6.8e-10 67.8 69 52.2
C08p41480 Brassica napus HOM05D001507 ORTHO05D002108 8.9e-10 67.4 69 55.1
BolC8t51709H Brassica oleracea HOM05D001507 ORTHO05D002108 8.9e-10 67.4 69 55.1
A09p58200 Brassica napus HOM05D001507 ORTHO05D002108 1.2e-09 67.0 69 56.5
BraA09t41208Z Brassica rapa HOM05D001507 ORTHO05D002108 1.2e-09 67.0 69 56.5
Sp4g00660 Schrenkiella parvula HOM05D001507 ORTHO05D002108 1.2e-09 67.0 69 53.6
CSS0000665 Camellia sinensis var. sinensis HOM05D001507 ORTHO05D002108 5.8e-09 64.7 76 46.1
Nitab4.5_0003234g0130 Nicotiana tabacum HOM05D001507 ORTHO05D002108 5.8e-09 64.7 75 46.7
Thhalv10000174m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 7.5e-09 64.3 69 52.2
Nitab4.5_0005796g0040 Nicotiana tabacum HOM05D001507 ORTHO05D002108 7.5e-09 64.3 75 46.7
Potri.004G158400 Populus trichocarpa HOM05D001507 ORTHO05D002108 9.9e-09 63.9 69 47.8
Sabra04G0105700 Salix brachista HOM05D001507 ORTHO05D002108 2.2e-08 62.8 73 46.6
BcaC03g17297 Brassica carinata HOM05D001507 ORTHO05D002108 2.9e-08 62.4 53 62.3
A06p48680 Brassica napus HOM05D001507 ORTHO05D002108 3.7e-08 62.0 93 46.2
BcaC03g17098 Brassica carinata HOM05D001507 ORTHO05D002108 4.9e-08 61.6 73 47.9
Cc02_g17280 Coffea canephora HOM05D001507 ORTHO05D002108 4.9e-08 61.6 76 44.7
Solyc10g054030.2 Solanum lycopersicum HOM05D001507 ORTHO05D002108 6.4e-08 61.2 79 45.6
Sopen10g023880 Solanum pennellii HOM05D001507 ORTHO05D002108 6.4e-08 61.2 80 42.5
PGSC0003DMG400010975 Solanum tuberosum HOM05D001507 ORTHO05D002108 6.4e-08 61.2 80 42.5
PGSC0003DMG400025731 Solanum tuberosum HOM05D001507 ORTHO05D002108 6.4e-08 61.2 80 42.5
AUR62011288 Chenopodium quinoa HOM05D001507 ORTHO05D002108 8.3e-08 60.8 78 48.7
BolC7t46746H Brassica oleracea HOM05D001507 ORTHO05D002108 1.1e-07 60.5 76 48.7
CARHR112420 Cardamine hirsuta HOM05D001507 ORTHO05D002108 1.4e-07 60.1 69 53.6
AUR62016771 Chenopodium quinoa HOM05D001507 ORTHO05D002108 1.9e-07 59.7 77 50.6
Ciclev10028499m.g Citrus clementina HOM05D001507 ORTHO05D002108 1.9e-07 59.7 66 47.0
Lj5A193T105 Lonicera japonica HOM05D001507 ORTHO05D002108 1.9e-07 59.7 75 48.0
Solyc01g109910.4 Solanum lycopersicum HOM05D001507 ORTHO05D002108 1.9e-07 59.7 75 44.0
PGSC0003DMG400038651 Solanum tuberosum HOM05D001507 ORTHO05D002108 1.9e-07 59.7 75 44.0
TWI31G0979 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 1.9e-07 59.7 66 48.5
AT2G21500 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 2.4e-07 59.3 69 50.7
Peaxi162Scf00003g00728 Petunia axillaris HOM05D001507 ORTHO05D002108 2.4e-07 59.3 79 45.6
Atru.chr5.3080 Acer truncatum HOM05D001507 ORTHO05D002108 3.2e-07 58.9 66 50.0
COL.COLO4_25988 Corchorus olitorius HOM05D001507 ORTHO05D002108 3.2e-07 58.9 69 46.4
Manes.11G091600 Manihot esculenta HOM05D001507 ORTHO05D002108 3.2e-07 58.9 73 46.6
Nitab4.5_0005128g0060 Nicotiana tabacum HOM05D001507 ORTHO05D002108 3.2e-07 58.9 79 43.0
Sed0002025 Sechium edule HOM05D001507 ORTHO05D002108 3.2e-07 58.9 74 47.3
Cpa.g.sc106.6 Carica papaya HOM05D001507 ORTHO05D002108 4.1e-07 58.5 66 48.5
Peaxi162Scf00016g00428 Petunia axillaris HOM05D001507 ORTHO05D002108 4.1e-07 58.5 76 44.7
Sopen01g052100 Solanum pennellii HOM05D001507 ORTHO05D002108 4.1e-07 58.5 75 42.7
DCAR_023013 Daucus carota HOM05D001507 ORTHO05D002108 5.4e-07 58.2 70 47.1
ClCG11G004160 Citrullus lanatus HOM05D001507 ORTHO05D002108 7.1e-07 57.8 74 44.6
Gohir.A13G032500 Gossypium hirsutum HOM05D001507 ORTHO05D002108 7.1e-07 57.8 69 44.9
Potri.009G120000 Populus trichocarpa HOM05D001507 ORTHO05D002108 7.1e-07 57.8 69 43.5
TWI79G0980 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 7.1e-07 57.8 66 48.5
Lj9C377G11 Lonicera japonica HOM05D001507 ORTHO05D002108 9.2e-07 57.4 63 50.8
Actinidia00547 Actinidia chinensis HOM05D001507 ORTHO05D002108 1.2e-06 57.0 76 42.1
MSTRG.20062 Avicennia marina HOM05D001507 ORTHO05D002108 1.2e-06 57.0 75 46.7
Haze_02327 Corylus avellana HOM05D001507 ORTHO05D002108 1.2e-06 57.0 65 52.3
Cfa005056 Carpinus fangiana HOM05D001507 ORTHO05D002108 1.6e-06 56.6 65 52.3
Sabra09G0092300 Salix brachista HOM05D001507 ORTHO05D002108 1.6e-06 56.6 69 42.0
FAN15G3647 Fragaria x ananassa HOM05D001507 ORTHO05D002108 2.1e-06 56.2 65 49.2
FAN27G1087 Fragaria x ananassa HOM05D001507 ORTHO05D002108 2.1e-06 56.2 65 49.2
Gohir.D13G030700 Gossypium hirsutum HOM05D001507 ORTHO05D002108 2.1e-06 56.2 69 43.5
Gorai.013G034900 Gossypium raimondii HOM05D001507 ORTHO05D002108 2.1e-06 56.2 69 43.5
MD10G1069100 Malus domestica HOM05D001507 ORTHO05D002108 2.1e-06 56.2 65 49.2
Manes.04G087266 Manihot esculenta HOM05D001507 ORTHO05D002108 2.1e-06 56.2 73 42.5
Prupe.8G091100 Prunus persica HOM05D001507 ORTHO05D002108 2.7e-06 55.8 65 50.8
Dinv42039 Davidia involucrata HOM05D001507 ORTHO05D002108 3.5e-06 55.5 75 40.0
Migut.B00210 Erythranthe guttata HOM05D001507 ORTHO05D002108 3.5e-06 55.5 69 44.9
Nitab4.5_0001317g0180 Nicotiana tabacum HOM05D001507 ORTHO05D002108 3.5e-06 55.5 80 43.8
FAN20G0016 Fragaria x ananassa HOM05D001507 ORTHO05D002108 4.6e-06 55.1 63 49.2
Hma1.2p1_0851F.1_g228430 Hydrangea macrophylla HOM05D001507 ORTHO05D002108 4.6e-06 55.1 75 45.3
Oeu020732.1 Olea europaea HOM05D001507 ORTHO05D002108 4.6e-06 55.1 75 48.0
Ah.01g019140 Amaranthus hybridus HOM05D001507 ORTHO05D002108 6.0e-06 54.7 69 47.8
CsaV3_2G015010 Cucumis sativus L. HOM05D001507 ORTHO05D002108 6.0e-06 54.7 69 43.5
PGR042G3147 Punica granatum HOM05D001507 ORTHO05D002108 6.0e-06 54.7 68 47.1
CiPaw.05G069700 Carya illinoinensis HOM05D001507 ORTHO05D002108 7.8e-06 54.3 64 50.0
FvH4_2g09590 Fragaria vesca HOM05D001507 ORTHO05D002108 7.8e-06 54.3 65 47.7
MD05G1061300 Malus domestica HOM05D001507 ORTHO05D002108 7.8e-06 54.3 65 47.7
QL11p044804 Quercus lobata HOM05D001507 ORTHO05D002108 7.8e-06 54.3 64 48.4
QL11p045220 Quercus lobata HOM05D001507 ORTHO05D002108 7.8e-06 54.3 64 48.4


User provided reference genes

Program Settings