Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11559 Brassica carinata HOM05D000083 ORTHO05D003582 9.7e-195 683.3 353 100.0
BcaB03g11561 Brassica carinata HOM05D000083 ORTHO05D003582 9.2e-153 543.9 338 86.1
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 4.7e-133 478.4 573 54.1
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 2.0e-131 473.0 573 53.6
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 1.7e-130 469.9 573 53.4
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 2.9e-130 469.2 573 53.4
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 2.1e-125 453.0 606 50.3
Thhalv10019926m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 3.1e-124 449.1 616 49.4
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 6.9e-124 448.0 607 49.8
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 5.8e-123 444.9 615 48.9
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 9.9e-123 444.1 615 48.8
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 8.4e-122 441.0 614 48.9
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 2.1e-120 436.4 613 48.8
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 4.6e-120 435.3 618 48.1
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 1.1e-118 430.6 605 48.4
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 1.3e-117 427.2 605 48.1
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 4.8e-117 425.2 532 53.8
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 4.8e-117 425.2 605 48.4
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 1.2e-115 420.6 618 46.9
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 4.5e-115 418.7 609 47.5
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 3.8e-114 415.6 605 47.1
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 1.6e-112 410.2 605 46.6
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 2.1e-112 409.8 617 46.8
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 4.6e-112 408.7 610 47.0
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 4.6e-112 408.7 605 46.6
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 3.6e-109 399.1 621 45.4
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 4.0e-108 395.6 609 46.3
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 2.9e-106 389.4 627 44.5
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 1.8e-103 380.2 606 44.7
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 1.4e-100 370.5 653 42.6
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 5.3e-100 368.6 671 41.7
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 9.0e-100 367.9 655 42.4
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 1.2e-99 367.5 651 42.2
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 1.7e-98 363.6 640 42.3
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 2.2e-98 363.2 652 42.0
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 3.8e-98 362.5 613 43.1
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 1.1e-97 360.9 662 41.8
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 1.1e-97 360.9 669 40.8
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 1.1e-97 360.9 663 41.2
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.9e-97 360.1 654 41.6
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 1.9e-97 360.1 670 41.0
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 2.5e-97 359.8 661 41.5
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 9.3e-97 357.8 655 41.8
BcaB03g11553 Brassica carinata HOM05D000083 ORTHO05D003582 4.6e-96 355.5 493 51.5
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 1.3e-95 354.0 662 40.8
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 3.0e-95 352.8 659 40.8
Duzib132G0002 Durio zibethinus HOM05D000083 ORTHO05D003582 2.5e-94 349.7 670 40.1
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 9.6e-94 347.8 660 40.8
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 9.6e-94 347.8 725 38.1
QL03p043964 Quercus lobata HOM05D000083 ORTHO05D003582 1.6e-93 347.1 666 40.2
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 2.8e-93 346.3 664 40.5
Haze_11721 Corylus avellana HOM05D000083 ORTHO05D003582 3.7e-93 345.9 683 40.1
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 6.3e-93 345.1 668 39.8
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 1.1e-92 344.4 671 40.8
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.4e-92 344.0 700 39.0
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 1.8e-92 343.6 629 40.7
Migut.E00701 Erythranthe guttata HOM05D000083 ORTHO05D003582 2.4e-92 343.2 620 41.3
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 4.1e-92 342.4 667 39.9
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 5.3e-92 342.0 670 40.1
Rhsim09G0073200 Rhododendron simsii HOM05D000083 ORTHO05D003582 5.3e-92 342.0 661 39.3
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 9.0e-92 341.3 545 44.8
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 2.0e-91 340.1 670 39.6
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.6e-91 339.7 669 39.3
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 2.6e-91 339.7 600 42.5
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 4.5e-91 339.0 633 41.2
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 5.9e-91 338.6 633 41.2
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 1.0e-90 337.8 696 38.6
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.0e-90 337.8 633 41.1
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 1.0e-90 337.8 653 41.2
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 3.8e-90 335.9 670 39.3
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 8.5e-90 334.7 653 40.9
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 8.5e-90 334.7 628 41.6
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 1.4e-89 334.0 467 47.5
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 2.5e-89 333.2 626 40.3
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 3.2e-89 332.8 611 41.6
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 3.2e-89 332.8 534 43.4
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.2e-89 332.8 668 39.4
DCAR_030398 Daucus carota HOM05D000083 ORTHO05D003582 2.7e-88 329.7 637 39.6
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 4.6e-88 328.9 622 40.8
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 7.9e-88 328.2 642 40.0
TAR629G3380 Trochodendron aralioides HOM05D000083 ORTHO05D003582 7.9e-88 328.2 441 49.0
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 1.0e-87 327.8 635 40.3
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 1.5e-86 323.9 470 47.9
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 2.5e-86 323.2 650 40.3
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 2.5e-86 323.2 654 39.6
Cpa.g.sc119.48 Carica papaya HOM05D000083 ORTHO05D003582 3.3e-86 322.8 420 51.9
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 5.7e-86 322.0 618 40.8
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 5.7e-86 322.0 502 43.4
VMungo1383G1323 Vigna mungo HOM05D000083 ORTHO05D003582 1.3e-85 320.9 640 40.3
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 1.6e-85 320.5 671 39.0
Oeu027907.6 Olea europaea HOM05D000083 ORTHO05D003582 2.8e-85 319.7 620 38.9
Gohir.A12G134300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 8.2e-85 318.2 479 45.3
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.1e-84 317.8 467 45.4
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 2.4e-84 316.6 651 39.3
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 4.1e-84 315.8 474 45.4
Psat7g176440 Pisum sativum HOM05D000083 ORTHO05D003582 4.1e-84 315.8 654 39.4
vmacro10904 Vaccinium macrocarpon HOM05D000083 ORTHO05D003582 9.1e-84 314.7 429 48.3
Atru.chr11.1178 Acer truncatum HOM05D000083 ORTHO05D003582 4.5e-83 312.4 428 49.1
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 4.5e-83 312.4 644 39.6
HPP92_002088 Vanilla planifolia HOM05D000083 ORTHO05D003582 5.9e-83 312.0 472 45.6
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 1.3e-82 310.8 489 43.6
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 1.7e-82 310.5 491 43.8
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 2.2e-82 310.1 686 36.7
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 2.9e-82 309.7 626 40.7
EL10Ac9g22930 Beta vulgaris HOM05D000083 ORTHO05D003582 2.9e-82 309.7 624 39.6
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 5.0e-82 308.9 626 40.6
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 5.0e-82 308.9 467 45.2
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 5.0e-82 308.9 436 47.9
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 6.5e-82 308.5 606 40.3
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 6.5e-82 308.5 656 38.0
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 8.5e-82 308.1 541 42.0
Lalb_Chr03g0024821 Lupinus albus HOM05D000083 ORTHO05D003582 1.1e-81 307.8 416 50.7
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 1.4e-81 307.4 653 39.1
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 2.5e-81 306.6 620 37.3
ATR0326G043 Amborella trichopoda HOM05D000083 ORTHO05D003582 3.2e-81 306.2 495 42.4
PGSC0003DMG400007647 Solanum tuberosum HOM05D000083 ORTHO05D003582 2.1e-80 303.5 649 38.2
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 6.1e-80 302.0 470 44.7
AUR62017682 Chenopodium quinoa HOM05D000083 ORTHO05D003582 1.4e-79 300.8 419 49.6
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 6.7e-79 298.5 604 39.1
MSTRG.2058 Avicennia marina HOM05D000083 ORTHO05D003582 1.1e-78 297.7 233 70.4
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 1.1e-78 297.7 497 43.1
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 5.7e-78 295.4 497 42.9
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 7.4e-78 295.0 603 39.0
Oeu033540.1 Olea europaea HOM05D000083 ORTHO05D003582 3.7e-77 292.7 399 48.1
unitig_22.g5627 Utricularia gibba HOM05D000083 ORTHO05D003582 6.3e-77 292.0 617 37.4
Gohir.D12G137900 Gossypium hirsutum HOM05D000083 ORTHO05D003582 8.2e-77 291.6 236 67.8
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 2.2e-74 283.5 486 42.2
Hund24289 Selenicereus undatus HOM05D000083 ORTHO05D003582 1.4e-71 274.2 466 42.9
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 1.1e-68 264.6 438 44.3
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 1.6e-67 260.8 594 36.9
Lalb_Chr10g0095051 Lupinus albus HOM05D000083 ORTHO05D003582 4.4e-62 242.7 420 43.3
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 1.7e-61 240.7 576 36.5
SEGI_09729 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 2.7e-59 233.4 240 56.7
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 3.5e-59 233.0 537 36.3
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 7.7e-59 231.9 537 36.1
SHI17990 Sapria himalayana HOM05D000083 ORTHO05D003582 9.4e-57 224.9 403 39.2
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 2.7e-56 223.4 538 36.1
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 1.8e-55 220.7 538 35.3
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 1.8e-55 220.7 538 35.3
HPP92_002093 Vanilla planifolia HOM05D000083 ORTHO05D003582 1.8e-55 220.7 298 49.7
SEGI_08600 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 9.5e-49 198.4 225 52.9
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 1.2e-48 198.0 479 35.5
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 2.8e-48 196.8 459 35.9
Mapoly0140s0044 Marchantia polymorpha HOM05D000083 ORTHO05D003582 1.7e-45 187.6 492 33.5
Pp3c15_11760 Physcomitrium patens HOM05D000083 ORTHO05D003582 1.9e-41 174.1 557 29.3
Oeu057598.1 Olea europaea HOM05D000083 ORTHO05D003582 2.0e-38 164.1 226 46.0
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 1.6e-35 154.5 367 32.4
Pp3c15_25040 Physcomitrium patens HOM05D000083 ORTHO05D003582 1.6e-35 154.5 462 31.6
Oeu023129.1 Olea europaea HOM05D000083 ORTHO05D003582 5.0e-34 149.4 205 44.9
Oeu023128.1 Olea europaea HOM05D000083 ORTHO05D003582 6.6e-34 149.1 209 45.0
Pp3c9_25590 Physcomitrium patens HOM05D000083 ORTHO05D003582 2.1e-32 144.1 364 32.1
HPP92_002069 Vanilla planifolia HOM05D000083 ORTHO05D003582 6.2e-32 142.5 170 54.1
Oeu007541.1 Olea europaea HOM05D000083 ORTHO05D003582 3.4e-30 136.7 240 39.2
Sed0024928 Sechium edule HOM05D000083 ORTHO05D003582 3.4e-30 136.7 314 38.2
COL.COLO4_08996 Corchorus olitorius HOM05D000083 ORTHO05D003582 3.1e-23 113.6 153 49.7
Atru.chr11.1179 Acer truncatum HOM05D000083 ORTHO05D003582 4.0e-23 113.2 124 57.3
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 6.8e-23 112.5 152 50.0
Cpa.g.sc119.47 Carica papaya HOM05D000083 ORTHO05D003582 1.2e-22 111.7 124 56.5
HPP92_002070 Vanilla planifolia HOM05D000083 ORTHO05D003582 5.8e-22 109.4 100 66.0
Actinidia04075 Actinidia chinensis HOM05D000083 ORTHO05D003582 1.3e-21 108.2 111 58.6
Oeu042808.3 Olea europaea HOM05D000083 ORTHO05D290297 8.3e-21 105.5 178 44.9
CBR_g38927 Chara braunii HOM05D000083 ORTHO05D003582 1.6e-19 101.3 337 29.7
Lalb_Chr03g0024811 Lupinus albus HOM05D000083 ORTHO05D003582 4.3e-17 93.2 155 45.2
CBR_g66805 Chara braunii HOM05D000083 ORTHO05D003582 7.3e-17 92.4 120 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4764 Anthoceros agrestis HOM05D000083 ORTHO05D003582 8.9e-15 85.5 76 55.3
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 1.6e-11 74.7 138 34.8
SHI17994 Sapria himalayana HOM05D000083 ORTHO05D003582 1.6e-11 74.7 60 66.7
Sabra02G0104200 Salix brachista HOM05D000994 ORTHO05D000817 5.2e-07 59.7 91 40.7


User provided reference genes

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