Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11526 Brassica carinata HOM05D005011 ORTHO05D006443 1.7e-67 259.2 131 100.0
BcaC06g32036 Brassica carinata HOM05D005011 ORTHO05D006443 4.6e-41 171.4 97 91.8
A10p32770 Brassica napus HOM05D005011 ORTHO05D006443 4.6e-41 171.4 97 91.8
C09p73640 Brassica napus HOM05D005011 ORTHO05D006443 4.6e-41 171.4 97 91.8
BolC9t60094H Brassica oleracea HOM05D005011 ORTHO05D006443 4.6e-41 171.4 97 91.8
BraA10t45311Z Brassica rapa HOM05D005011 ORTHO05D006443 4.6e-41 171.4 97 91.8
Thhalv10013408m.g Eutrema salsugineum HOM05D005011 ORTHO05D006443 4.6e-41 171.4 97 91.8
CARHR210200 Cardamine hirsuta HOM05D005011 ORTHO05D006443 5.1e-40 167.9 97 88.7
AT5G03160 Arabidopsis thaliana HOM05D005011 ORTHO05D006443 8.7e-40 167.2 97 88.7
AL6G12440 Arabidopsis lyrata HOM05D005011 ORTHO05D006443 3.3e-39 165.2 97 86.6
Carub.0006s0195 Capsella rubella HOM05D005011 ORTHO05D006443 3.3e-39 165.2 97 86.6
Sp6g39560 Schrenkiella parvula HOM05D005011 ORTHO05D006443 2.1e-38 162.5 97 87.6
CARHR084180 Cardamine hirsuta HOM05D005011 ORTHO05D006443 3.1e-37 158.7 97 81.4
Aa31LG3G2190 Aethionema arabicum HOM05D005011 ORTHO05D006443 4.0e-37 158.3 97 81.4
THA.LOC104816331 Tarenaya hassleriana HOM05D005011 ORTHO05D006443 4.9e-35 151.4 97 76.3
Thecc.05G057500 Theobroma cacao HOM05D005011 ORTHO05D006443 4.9e-35 151.4 97 79.4
Cpa.g.sc45.60 Carica papaya HOM05D005011 ORTHO05D006443 3.2e-34 148.7 97 78.4
AUR62040051 Chenopodium quinoa HOM05D005011 ORTHO05D006443 4.2e-34 148.3 97 76.3
Gorai.002G248700 Gossypium raimondii HOM05D005011 ORTHO05D006443 5.4e-34 147.9 97 76.3
Gohir.A01G215700 Gossypium hirsutum HOM05D005011 ORTHO05D006443 7.1e-34 147.5 97 76.3
Gohir.D01G204500 Gossypium hirsutum HOM05D005011 ORTHO05D006443 7.1e-34 147.5 97 76.3
Duzib093G0219 Durio zibethinus HOM05D005011 ORTHO05D006443 9.3e-34 147.1 97 75.3
Sc20g0005180 Simmondsia chinensis HOM05D005011 ORTHO05D006443 2.7e-33 145.6 97 74.2
COL.COLO4_27042 Corchorus olitorius HOM05D005011 ORTHO05D006443 3.5e-33 145.2 97 75.3
Duzib106G1740 Durio zibethinus HOM05D005011 ORTHO05D006443 3.5e-33 145.2 97 75.3
Aa31LG1G21920 Aethionema arabicum HOM05D005011 ORTHO05D006443 6.0e-33 144.4 109 69.7
Duzib128G0881 Durio zibethinus HOM05D005011 ORTHO05D006443 1.0e-32 143.7 97 76.3
Manes.08G005800 Manihot esculenta HOM05D005011 ORTHO05D006443 1.0e-32 143.7 97 74.2
CSS0006107 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.7e-32 142.9 97 74.2
RcHm_v2.0_Chr3g0469391 Rosa chinensis HOM05D005011 ORTHO05D006443 1.7e-32 142.9 97 73.2
Hma1.2p1_0614F.1_g189520 Hydrangea macrophylla HOM05D005011 ORTHO05D006443 2.3e-32 142.5 97 73.2
Lsat_1_v5_gn_2_108740 Lactuca sativa HOM05D005011 ORTHO05D006443 2.3e-32 142.5 97 73.2
FvH4_6g15690 Fragaria vesca HOM05D005011 ORTHO05D006443 3.0e-32 142.1 97 72.2
FAN14G4454 Fragaria x ananassa HOM05D005011 ORTHO05D006443 3.0e-32 142.1 97 72.2
Lj2A111T58 Lonicera japonica HOM05D005011 ORTHO05D006443 3.0e-32 142.1 97 73.2
CAN.G888.19 Capsicum annuum HOM05D005011 ORTHO05D006443 3.9e-32 141.7 97 73.2
FAN09G2426 Fragaria x ananassa HOM05D005011 ORTHO05D006443 5.1e-32 141.4 97 71.1
PGSC0003DMG400001752 Solanum tuberosum HOM05D005011 ORTHO05D006443 5.1e-32 141.4 97 73.2
Atru.chr8.1881 Acer truncatum HOM05D005011 ORTHO05D006443 6.6e-32 141.0 97 74.2
Dinv37275 Davidia involucrata HOM05D005011 ORTHO05D006443 6.6e-32 141.0 97 72.2
FAN02G2869 Fragaria x ananassa HOM05D005011 ORTHO05D006443 6.6e-32 141.0 97 71.1
Gohir.A09G150600 Gossypium hirsutum HOM05D005011 ORTHO05D006443 6.6e-32 141.0 97 72.2
HanXRQChr07g0195601 Helianthus annuus HOM05D005011 ORTHO05D006443 8.7e-32 140.6 97 72.2
Solyc09g007630.3 Solanum lycopersicum HOM05D005011 ORTHO05D006443 8.7e-32 140.6 97 72.2
TWI74G0245 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 8.7e-32 140.6 97 73.2
ECA238G1048 Erigeron canadensis HOM05D005011 ORTHO05D006443 1.1e-31 140.2 97 73.2
Manes.09G069500 Manihot esculenta HOM05D005011 ORTHO05D006443 1.1e-31 140.2 97 73.2
Sopen09g002500 Solanum pennellii HOM05D005011 ORTHO05D006443 1.1e-31 140.2 97 72.2
FAN05G4704 Fragaria x ananassa HOM05D005011 ORTHO05D006443 1.5e-31 139.8 97 70.1
TAR623G0402 Trochodendron aralioides HOM05D005011 ORTHO05D006443 1.9e-31 139.4 97 73.2
Nitab4.5_0005150g0050 Nicotiana tabacum HOM05D005011 ORTHO05D006443 2.5e-31 139.0 97 72.2
GSVIVG01025659001 Vitis vinifera HOM05D005011 ORTHO05D006443 2.5e-31 139.0 97 72.2
Cc06_g03820 Coffea canephora HOM05D005011 ORTHO05D006443 3.3e-31 138.7 97 71.1
Nitab4.5_0000101g0010 Nicotiana tabacum HOM05D005011 ORTHO05D006443 3.3e-31 138.7 97 72.2
Potri.016G088600 Populus trichocarpa HOM05D005011 ORTHO05D006443 3.3e-31 138.7 97 72.2
Sabra16G0094100 Salix brachista HOM05D005011 ORTHO05D006443 5.6e-31 137.9 97 71.1
Aqoxy4G03250 Aquilegia oxysepala HOM05D005011 ORTHO05D006443 7.4e-31 137.5 97 73.2
MSTRG.26712 Avicennia marina HOM05D005011 ORTHO05D006443 7.4e-31 137.5 97 70.1
EL10Ac7g16537 Beta vulgaris HOM05D005011 ORTHO05D006443 7.4e-31 137.5 97 70.1
TWI53G1318 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 7.4e-31 137.5 97 73.2
Gohir.D09G146300 Gossypium hirsutum HOM05D005011 ORTHO05D006443 9.6e-31 137.1 97 71.1
Gorai.006G167500 Gossypium raimondii HOM05D005011 ORTHO05D006443 9.6e-31 137.1 97 71.1
Lalb_Chr25g0289171 Lupinus albus HOM05D005011 ORTHO05D006443 9.6e-31 137.1 97 73.2
Oeu059978.1 Olea europaea HOM05D005011 ORTHO05D006443 9.6e-31 137.1 97 72.2
Ca_08838_v3 Cicer arietinum L. HOM05D005011 ORTHO05D006443 1.3e-30 136.7 97 72.2
Haze_20614 Corylus avellana HOM05D005011 ORTHO05D006443 1.3e-30 136.7 97 72.2
vmacro20042 Vaccinium macrocarpon HOM05D005011 ORTHO05D006443 1.3e-30 136.7 97 71.1
Ah.15g092230 Amaranthus hybridus HOM05D005011 ORTHO05D006443 2.1e-30 136.0 97 72.2
Hund20209 Selenicereus undatus HOM05D005011 ORTHO05D006443 2.1e-30 136.0 97 70.1
Eucgr.K03238 Eucalyptus grandis HOM05D005011 ORTHO05D006443 2.8e-30 135.6 97 71.1
Oeu014965.1 Olea europaea HOM05D005011 ORTHO05D006443 2.8e-30 135.6 97 69.1
VMungo1383G1126 Vigna mungo HOM05D005011 ORTHO05D006443 2.8e-30 135.6 97 71.1
Lalb_Chr01g0018931 Lupinus albus HOM05D005011 ORTHO05D006443 3.6e-30 135.2 97 70.1
Peaxi162Scf00182g00120 Petunia axillaris HOM05D005011 ORTHO05D006443 3.6e-30 135.2 97 70.1
Ciclev10011610m.g Citrus clementina HOM05D005011 ORTHO05D006443 4.8e-30 134.8 97 70.1
MELO3C014249.2 Cucumis melo HOM05D005011 ORTHO05D006443 4.8e-30 134.8 97 72.2
CsaV3_6G039440 Cucumis sativus L. HOM05D005011 ORTHO05D006443 4.8e-30 134.8 97 72.2
Dinv35745 Davidia involucrata HOM05D005011 ORTHO05D006443 4.8e-30 134.8 97 71.1
Medtr7g101070 Medicago truncatula HOM05D005011 ORTHO05D006443 4.8e-30 134.8 97 69.1
QL07p044722 Quercus lobata HOM05D005011 ORTHO05D006443 4.8e-30 134.8 97 71.1
Cfa017534 Carpinus fangiana HOM05D005011 ORTHO05D006443 6.2e-30 134.4 97 71.1
Lalb_Chr20g0112801 Lupinus albus HOM05D005011 ORTHO05D006443 6.2e-30 134.4 97 71.1
PSO063G2699 Papaver somniferum HOM05D005011 ORTHO05D006443 6.2e-30 134.4 95 70.5
Rhsim05G0182800 Rhododendron simsii HOM05D005011 ORTHO05D006443 6.2e-30 134.4 97 68.0
CANSAT80G2737 Cannabis sativa HOM05D005011 ORTHO05D006443 8.1e-30 134.0 97 71.1
DCAR_020841 Daucus carota HOM05D005011 ORTHO05D006443 8.1e-30 134.0 97 69.1
CSS0031764 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.1e-29 133.7 97 70.1
CiPaw.09G177600 Carya illinoinensis HOM05D005011 ORTHO05D006443 1.1e-29 133.7 97 70.1
Glyma.03G179800 Glycine max HOM05D005011 ORTHO05D006443 1.1e-29 133.7 97 69.1
Glyma.19G180600 Glycine max HOM05D005011 ORTHO05D006443 1.1e-29 133.7 97 69.1
PSO339G5285 Papaver somniferum HOM05D005011 ORTHO05D006443 1.1e-29 133.7 95 70.5
Prupe.6G238400 Prunus persica HOM05D005011 ORTHO05D006443 1.1e-29 133.7 97 70.1
Sed0004997 Sechium edule HOM05D005011 ORTHO05D006443 1.1e-29 133.7 97 71.1
ClCG04G008930 Citrullus lanatus HOM05D005011 ORTHO05D006443 1.4e-29 133.3 97 70.1
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 1.4e-29 133.3 97 67.0
Lj1g0002210 Lotus japonicus HOM05D005011 ORTHO05D006443 1.4e-29 133.3 97 70.1
TAR636G2418 Trochodendron aralioides HOM05D005011 ORTHO05D006443 1.4e-29 133.3 97 70.1
MD04G1100100 Malus domestica HOM05D005011 ORTHO05D006443 1.8e-29 132.9 97 69.1
PGR142G0484 Punica granatum HOM05D005011 ORTHO05D006443 1.8e-29 132.9 97 69.1
SalBow5G1413 Salvia bowleyana HOM05D005011 ORTHO05D006443 1.8e-29 132.9 99 66.7
Sed0021094 Sechium edule HOM05D005011 ORTHO05D006443 2.4e-29 132.5 97 69.1
TPR.G18270 Trifolium pratense HOM05D005011 ORTHO05D006443 2.4e-29 132.5 97 69.1
arahy.Tifrunner.gnm1.ann1.P0ZPTX Arachis hypogaea HOM05D005011 ORTHO05D006443 5.3e-29 131.3 97 70.1
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 6.9e-29 131.0 97 70.1
Phvul.001G176300 Phaseolus vulgaris HOM05D005011 ORTHO05D006443 6.9e-29 131.0 97 68.0
Psat3g044040 Pisum sativum HOM05D005011 ORTHO05D006443 6.9e-29 131.0 97 68.0
HPP92_025091 Vanilla planifolia HOM05D005011 ORTHO05D006443 6.9e-29 131.0 97 69.1
Nn2g13067 Nelumbo nucifera HOM05D005011 ORTHO05D006443 1.5e-28 129.8 96 67.7
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 4.5e-28 128.3 97 63.9
ATR0314G021 Amborella trichopoda HOM05D005011 ORTHO05D006443 7.6e-28 127.5 97 64.9
MD12G1120200 Malus domestica HOM05D005011 ORTHO05D006443 1.3e-27 126.7 97 67.0
SGA_v2.0_scaffold452G51844 Striga asiatica HOM05D005011 ORTHO05D006443 1.7e-27 126.3 97 64.9
DCAR_009276 Daucus carota HOM05D005011 ORTHO05D006443 6.4e-27 124.4 97 63.9
Os01g0977200 Oryza sativa ssp. japonica HOM05D005011 ORTHO05D006443 4.2e-26 121.7 97 62.9
Os02g0195300 Oryza sativa ssp. japonica HOM05D005011 ORTHO05D006443 4.2e-26 121.7 97 62.9
ATR0314G006 Amborella trichopoda HOM05D005011 ORTHO05D006443 5.5e-26 121.3 94 63.8
SEGI_03688 Sequoiadendron giganteum HOM05D005011 ORTHO05D006443 9.3e-26 120.6 97 63.9
SHI12530 Sapria himalayana HOM05D005011 ORTHO05D006443 1.2e-25 120.2 97 60.8
Zm00001eb362030 Zea mays HOM05D005011 ORTHO05D006443 2.7e-25 119.0 97 59.8
Actinidia19688 Actinidia chinensis HOM05D005011 ORTHO05D006443 1.0e-24 117.1 77 71.4
unitig_0.g690 Utricularia gibba HOM05D005011 ORTHO05D006443 1.2e-20 103.6 153 41.2
SMO118G0210 Selaginella moellendorffii HOM05D005011 ORTHO05D006443 1.2e-17 93.6 97 49.5
Mapoly0115s0071 Marchantia polymorpha HOM05D005011 ORTHO05D006443 1.8e-16 89.7 97 49.5
CSS0037236 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 3.9e-16 88.6 97 55.7
Aa31LG4G10620 Aethionema arabicum HOM05D005011 ORTHO05D006443 6.7e-16 87.8 87 55.2
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 3.7e-14 82.0 100 44.0
CSS0012228 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 7.6e-12 74.3 54 74.1
MBI05_g35615_MAGBIO Magnolia biondii HOM05D005011 ORTHO05D006443 9.3e-10 67.4 37 86.5
CBR_g32064 Chara braunii HOM05D005011 ORTHO05D006443 2.5e-07 59.3 78 35.9
Cre01.g032500 Chlamydomonas reinhardtii HOM05D005011 ORTHO05D006443 4.3e-07 58.5 60 40.0


User provided reference genes

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