Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11458 Brassica carinata HOM05D007984 ORTHO05D013027 4.8e-175 618.2 445 100.0
BcaB03g15507 Brassica carinata HOM05D007984 ORTHO05D013027 3.6e-114 416.0 458 68.1
BcaB07g32849 Brassica carinata HOM05D007984 ORTHO05D013027 1.0e-95 354.8 461 52.9
BcaB01g01526 Brassica carinata HOM05D007984 ORTHO05D013027 1.3e-90 337.8 477 57.9
BcaB05g23871 Brassica carinata HOM05D007984 ORTHO05D013027 1.7e-87 327.4 458 54.6
BcaB03g16422 Brassica carinata HOM05D007984 ORTHO05D013027 7.9e-77 292.0 468 48.1
BcaB04g18306 Brassica carinata HOM05D007984 ORTHO05D013027 3.9e-60 236.5 471 42.0
BcaB08g35153 Brassica carinata HOM05D007984 ORTHO05D013027 5.0e-55 219.5 287 48.8
BcaC03g13667 Brassica carinata HOM05D007984 ORTHO05D039917 2.2e-50 204.1 286 47.9
BcaB08g34926 Brassica carinata HOM05D007984 ORTHO05D013027 8.3e-50 202.2 110 87.3
BcaB02g11366 Brassica carinata HOM05D007984 ORTHO05D013027 1.6e-48 198.0 338 42.0
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 6.5e-47 192.6 166 64.5
BcaB02g11402 Brassica carinata HOM05D007984 ORTHO05D013027 1.6e-37 161.4 223 51.6
BcaB03g16118 Brassica carinata HOM05D003554 ORTHO05D005130 3.4e-35 153.7 288 41.0
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 3.4e-35 153.7 141 61.0
A01p30450 Brassica napus HOM05D007984 ORTHO05D017581 7.8e-32 142.5 290 45.5
BcaB08g35475 Brassica carinata HOM05D007984 ORTHO05D013027 4.7e-29 133.3 272 42.6
A03p68030 Brassica napus HOM05D007984 ORTHO05D017581 4.7e-29 133.3 291 44.0
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 2.0e-27 127.9 105 65.7
A01p27680 Brassica napus HOM05D007984 ORTHO05D017581 5.4e-25 119.8 289 41.2
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 2.7e-24 117.5 264 37.9
BcaB06g25964 Brassica carinata HOM05D007984 ORTHO05D013027 2.1e-21 107.8 242 46.7
BcaB01g00293 Brassica carinata HOM05D007984 ORTHO05D018700 8.1e-21 105.9 59 94.9
BcaB02g11067 Brassica carinata HOM05D007984 ORTHO05D018700 2.6e-19 100.9 114 78.9
C07p01300 Brassica napus HOM05D007984 ORTHO05D013027 2.6e-19 100.9 260 43.5
BcaB05g23507 Brassica carinata HOM05D007984 ORTHO05D013027 5.8e-19 99.8 478 27.4
BcaB06g26947 Brassica carinata HOM05D007984 ORTHO05D018700 7.5e-19 99.4 59 91.5
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 1.7e-18 98.2 140 47.1
BcaB03g16380 Brassica carinata HOM05D007984 ORTHO05D017581 4.9e-18 96.7 264 32.2
BcaB01g01440 Brassica carinata HOM05D007984 ORTHO05D018700 1.1e-17 95.5 59 89.8
BcaB03g16379 Brassica carinata HOM05D007984 ORTHO05D018700 2.4e-17 94.4 112 53.6
BcaB07g33104 Brassica carinata HOM05D007984 ORTHO05D039989 7.1e-17 92.8 83 56.6
BcaB02g11428 Brassica carinata HOM05D007984 ORTHO05D013027 1.2e-16 92.0 295 31.5
A04p09640 Brassica napus HOM05D007984 ORTHO05D042340 6.0e-16 89.7 64 78.1
BraA04t16623Z Brassica rapa HOM05D007984 ORTHO05D042340 6.0e-16 89.7 64 78.1
A03p66520 Brassica napus HOM05D003037 ORTHO05D003659 7.8e-16 89.4 255 42.0
BcaB06g26264 Brassica carinata HOM05D007984 ORTHO05D013027 3.3e-14 84.0 288 30.6
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-13 82.0 116 46.6
A04p09600 Brassica napus HOM05D007984 ORTHO05D039989 3.6e-13 80.5 62 62.9
C02p39560 Brassica napus HOM05D007984 ORTHO05D099310 3.6e-13 80.5 62 72.6
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 6.2e-13 79.7 142 40.1
BraA01t03178Z Brassica rapa HOM05D007984 ORTHO05D018700 8.1e-13 79.3 64 71.9
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 1.1e-12 79.0 109 45.9
BcaC05g27840 Brassica carinata HOM05D007984 ORTHO05D014515 1.1e-12 79.0 286 40.9
BraA01t02669Z Brassica rapa HOM05D007984 ORTHO05D018700 1.8e-12 78.2 64 70.3
A03p68560 Brassica napus HOM05D007984 ORTHO05D017581 4.0e-12 77.0 64 70.3
BraSC39t46204Z Brassica rapa HOM05D007984 ORTHO05D017581 4.0e-12 77.0 64 70.3
BcaB03g16136 Brassica carinata HOM05D007984 ORTHO05D013027 5.2e-12 76.6 295 28.8
A01p26910 Brassica napus HOM05D007984 ORTHO05D041558 6.8e-12 76.3 64 68.8
BraA01t02826Z Brassica rapa HOM05D007984 ORTHO05D041558 6.8e-12 76.3 64 68.8
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 8.9e-12 75.9 142 39.4
A06p23780 Brassica napus HOM05D007984 ORTHO05D017581 1.2e-11 75.5 64 68.8
A06p26050 Brassica napus HOM05D007984 ORTHO05D017581 1.2e-11 75.5 64 68.8
BNapus_Darmor_BZH_scaffold_65p00100 Brassica napus HOM05D007984 ORTHO05D017581 1.2e-11 75.5 64 68.8
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-11 75.5 142 38.0
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 3.4e-11 73.9 142 38.0
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 3.4e-11 73.9 142 38.0
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 3.4e-11 73.9 142 37.3
BcaC01g00316 Brassica carinata HOM05D003554 ORTHO05D014926 4.4e-11 73.6 110 44.5
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 2.2e-10 71.2 113 42.5
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 2.9e-10 70.9 109 43.1
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 3.7e-10 70.5 110 42.7
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 1.1e-09 68.9 110 41.8
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 4.1e-09 67.0 114 38.6
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.2e-08 65.5 139 34.5
BcaB07g33398 Brassica carinata HOM05D007984 ORTHO05D094050 1.2e-08 65.5 61 60.7
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.1e-08 64.7 137 35.8
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 3.5e-08 63.9 111 38.7
BcaB06g26957 Brassica carinata HOM05D007984 ORTHO05D094125 6.0e-08 63.2 62 58.1
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 6.0e-08 63.2 115 37.4
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 8.6e-07 59.3 83 45.8
BraA10t42946Z Brassica rapa HOM05D007984 ORTHO05D014515 8.6e-07 59.3 53 62.3
BcaB02g06509 Brassica carinata HOM05D007984 ORTHO05D093133 2.5e-06 57.8 62 58.1
BcaC03g16180 Brassica carinata HOM05D007984 ORTHO05D014515 2.5e-06 57.8 48 66.7
BcaC08g45909 Brassica carinata HOM05D003554 ORTHO05D014926 2.5e-06 57.8 109 37.6
BcaB04g18175 Brassica carinata HOM05D007984 ORTHO05D096281 3.3e-06 57.4 53 62.3
BNapus_Darmor_BZH_scaffold_38p02570 Brassica napus HOM05D000747 ORTHO05D039917 3.3e-06 57.4 59 55.9
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.6e-06 56.6 113 35.4
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 9.6e-06 55.8 140 31.4


User provided reference genes

Program Settings