Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 2.7e-250 868.2 442 100.0
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.1e-243 844.7 443 97.7
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.1e-243 844.7 443 97.7
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 7.0e-243 843.6 443 97.5
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 2.0e-242 842.0 442 97.3
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 4.5e-242 840.9 442 97.1
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 5.9e-242 840.5 442 97.5
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 5.9e-242 840.5 442 97.1
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 5.9e-242 840.5 442 97.5
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 7.8e-242 840.1 442 97.1
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.9e-241 838.2 442 96.8
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 8.6e-241 836.6 442 96.8
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 9.5e-240 833.2 444 96.4
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 4.6e-234 814.3 442 94.6
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 7.8e-234 813.5 442 93.9
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.3e-233 812.8 442 94.3
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 2.8e-231 805.1 441 93.4
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.4e-230 802.7 441 93.2
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 5.6e-216 754.2 445 87.0
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 6.8e-214 747.3 448 84.2
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 6.9e-206 720.7 424 84.4
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.4e-205 718.0 424 84.7
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 4.4e-205 718.0 424 83.7
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.4e-204 714.1 424 84.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 2.4e-203 712.2 428 83.6
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 5.4e-203 711.1 423 83.9
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.1e-202 709.1 432 81.9
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.1e-202 709.1 432 81.9
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 6.0e-202 707.6 423 83.0
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.9e-201 704.9 424 82.5
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.5e-200 703.0 428 82.2
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.9e-200 702.6 423 82.5
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 5.6e-200 701.0 429 83.2
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 9.6e-200 700.3 424 83.5
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-199 699.9 424 82.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.3e-199 699.9 424 82.1
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.6e-199 699.5 424 81.6
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.8e-198 696.0 425 81.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.8e-198 696.0 424 81.4
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.2e-197 693.3 429 82.3
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.6e-197 692.2 455 78.5
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.7e-196 689.5 427 79.6
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.2e-196 689.1 428 81.3
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.9e-196 688.0 428 80.1
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.4e-196 687.6 430 80.9
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.4e-196 687.6 430 80.9
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-195 686.8 425 80.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.4e-195 686.4 430 80.2
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.4e-195 685.6 426 81.2
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.2e-195 684.9 425 79.8
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.4e-195 684.5 445 76.6
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.4e-195 684.5 424 80.7
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.2e-194 683.3 424 80.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.2e-194 683.3 423 81.1
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.2e-194 683.3 426 81.5
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.5e-194 681.8 424 80.7
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 3.5e-194 681.8 426 80.8
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 6.0e-194 681.0 425 79.5
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 7.9e-194 680.6 472 74.8
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 2.3e-193 679.1 433 79.7
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.9e-193 678.3 431 80.5
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 6.7e-193 677.6 427 78.9
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.7e-193 677.6 402 82.3
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.7e-193 677.6 429 79.0
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.1e-192 676.8 427 79.9
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.5e-192 676.4 427 80.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 2.5e-192 675.6 401 82.3
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 2.5e-192 675.6 401 82.3
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 3.3e-192 675.2 422 79.6
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.3e-192 674.9 432 78.9
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 7.4e-192 674.1 428 77.8
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.3e-191 673.3 434 77.2
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 2.1e-191 672.5 438 77.2
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 2.1e-191 672.5 432 78.0
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.8e-191 672.2 430 78.8
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 4.8e-191 671.4 428 77.8
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.8e-191 671.4 402 81.8
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 6.2e-191 671.0 424 80.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 79.0
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.1e-190 670.2 385 85.7
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.8e-190 669.5 426 78.2
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.8e-190 669.5 440 77.0
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 5.3e-190 667.9 437 77.6
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 6.9e-190 667.5 427 78.5
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 6.9e-190 667.5 437 76.7
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.9e-190 667.5 424 78.8
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 9.0e-190 667.2 424 78.8
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.2e-189 666.8 429 79.3
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.5e-189 666.4 428 77.8
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.6e-189 665.6 398 82.2
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 3.4e-189 665.2 426 80.3
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.5e-189 664.8 429 78.3
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.8e-189 664.5 464 73.5
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 7.6e-189 664.1 428 79.0
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.3e-188 663.3 432 76.4
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.7e-188 662.9 444 76.4
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.2e-188 662.5 439 75.4
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 2.2e-188 662.5 430 77.7
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 4.9e-188 661.4 426 79.6
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.9e-188 661.4 428 78.3
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.4e-187 659.8 428 77.8
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 3.5e-186 655.2 435 76.3
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.5e-186 655.2 430 76.5
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.6e-186 654.8 425 78.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 6.0e-186 654.4 433 77.1
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 2.3e-185 652.5 425 76.0
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 5.1e-185 651.4 445 75.3
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.1e-185 651.4 425 77.2
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.9e-184 649.4 432 75.9
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.3e-184 648.7 405 78.3
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 3.3e-184 648.7 430 77.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 3.3e-184 648.7 431 77.5
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 7.4e-184 647.5 424 76.4
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 8.2e-183 644.0 427 77.5
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 5.3e-182 641.3 428 76.2
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 7.1e-179 630.9 428 75.0
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.7e-178 629.0 393 79.1
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.8e-177 626.3 552 61.6
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.9e-176 622.9 507 65.3
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 4.3e-176 621.7 426 75.6
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.7e-176 621.3 426 74.6
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 9.7e-176 620.5 394 78.4
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 6.9e-174 614.4 435 73.3
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.5e-173 613.2 409 75.6
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.5e-173 613.2 445 71.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 3.4e-173 612.1 432 72.2
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 2.7e-170 602.4 388 74.2
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 3.6e-170 602.1 435 68.0
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.9e-169 598.6 414 72.7
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 3.3e-168 595.5 406 74.1
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 4.3e-168 595.1 410 73.9
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 3.1e-166 589.0 347 81.8
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.4e-165 585.5 428 68.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.0e-161 573.9 362 80.1
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 9.1e-158 560.8 337 83.1
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.2e-157 560.5 354 80.2
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.5e-157 560.1 362 77.3
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 1.9e-155 553.1 342 80.7
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.3e-151 540.4 385 70.4
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 4.5e-149 531.9 336 80.7
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.0e-145 520.8 402 67.9
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 8.8e-145 517.7 394 66.8
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.4e-142 510.4 432 63.0
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 4.1e-142 508.8 363 70.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 7.0e-142 508.1 377 68.2
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.2e-141 507.3 365 71.5
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.5e-139 499.6 345 73.6
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.2e-128 464.2 261 85.1
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.9e-118 430.3 331 63.7
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 3.5e-117 426.0 257 82.9
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 7.8e-117 424.9 283 74.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.1e-113 412.9 391 58.3
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 3.0e-100 369.8 230 80.9
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-99 367.9 239 76.6
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 9.3e-86 321.6 232 73.3
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.3e-84 317.8 184 85.9
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-81 308.1 181 85.1
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 3.8e-79 299.7 390 47.7
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.4e-78 297.7 365 44.9
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.1e-67 261.5 157 79.0
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 9.3e-62 241.9 220 63.6
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.1e-61 240.7 146 80.8
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.1e-59 235.0 193 60.1
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.1e-59 235.0 193 60.1
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.8e-58 230.3 244 56.1
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 4.8e-42 176.4 140 67.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.4e-41 174.9 99 87.9
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.5e-32 143.7 220 46.4
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.7e-29 133.3 294 35.4
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.0e-28 130.6 82 79.3
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 3.2e-22 110.5 82 69.5
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 4.2e-22 110.2 60 88.3
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-19 100.5 90 58.9
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 3.4e-19 100.5 59 84.7
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 3.4e-19 100.5 59 84.7
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 5.0e-15 86.7 84 56.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 8.6e-15 85.9 82 58.5
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.5e-14 84.3 82 59.8
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 5.6e-14 83.2 49 79.6
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.6e-13 81.6 45 82.2
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.1e-13 81.3 82 58.5
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.4e-12 78.6 55 74.5
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 7.5e-11 72.8 53 79.2
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 2.7e-08 64.3 43 72.1
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.3e-07 62.0 37 81.1
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 5.6e-06 56.6 55 54.5


User provided reference genes

Program Settings