Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.6e-138 496.1 257 100.0
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.2e-66 257.3 246 62.2
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 2.9e-63 246.1 246 60.2
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 4.6e-61 238.8 247 59.1
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 6.0e-61 238.4 246 58.1
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-60 236.9 246 58.5
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 3.0e-60 236.1 246 58.5
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 3.0e-60 236.1 246 58.5
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.9e-60 235.7 246 56.9
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 7.3e-59 231.5 246 56.1
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.6e-58 230.3 246 56.9
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.4e-57 226.5 246 55.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 4.0e-57 225.7 246 54.5
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 2.6e-56 223.0 247 57.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.8e-56 221.9 246 53.7
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.3e-55 220.7 254 54.7
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.2e-55 219.9 247 55.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.2e-55 219.9 247 55.9
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.9e-46 190.3 246 46.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.7e-42 176.0 246 44.3
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 8.2e-42 174.9 246 45.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 6.9e-41 171.8 190 53.7
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.5e-40 170.6 190 53.2
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.5e-40 169.1 190 52.6
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.8e-40 168.7 248 44.4
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.6e-40 168.3 192 52.1
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 7.6e-40 168.3 190 51.6
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.6e-40 168.3 193 52.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.7e-39 167.2 193 49.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.7e-39 167.2 191 50.3
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.7e-39 167.2 191 50.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.9e-39 166.4 176 59.1
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.9e-39 166.4 190 52.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 8.4e-39 164.9 159 57.9
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.9e-38 163.7 262 41.2
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.9e-38 163.7 252 41.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.9e-38 163.7 193 50.8
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.2e-38 162.5 190 50.5
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 4.2e-38 162.5 190 50.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 4.2e-38 162.5 126 69.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 4.2e-38 162.5 152 59.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 5.5e-38 162.2 159 54.7
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 7.1e-38 161.8 193 49.2
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 7.1e-38 161.8 191 50.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 9.3e-38 161.4 240 44.2
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.2e-37 161.0 190 52.1
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.2e-37 161.0 155 58.1
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.2e-37 161.0 203 47.3
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.6e-37 160.6 190 50.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.7e-37 159.8 196 52.0
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.5e-37 159.5 206 47.6
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.6e-37 159.1 192 49.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 6.0e-37 158.7 160 56.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 7.9e-37 158.3 251 39.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.0e-36 157.9 196 50.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.3e-36 157.5 149 57.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.3e-36 157.5 190 48.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.3e-36 156.8 203 47.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 3.0e-36 156.4 205 48.3
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.1e-36 155.6 198 46.5
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 5.1e-36 155.6 207 44.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 5.1e-36 155.6 159 54.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 6.7e-36 155.2 189 47.1
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 6.7e-36 155.2 224 47.8
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 8.7e-36 154.8 161 50.3
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 8.7e-36 154.8 189 46.6
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.1e-35 154.5 158 52.5
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.1e-35 154.5 149 56.4
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.5e-35 154.1 190 49.5
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.5e-35 154.1 189 47.6
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.5e-35 154.1 192 48.4
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.9e-35 153.7 246 39.8
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.9e-35 153.7 194 49.5
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.5e-35 153.3 164 51.8
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 4.3e-35 152.5 192 47.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.3e-35 152.5 217 41.5
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 5.7e-35 152.1 160 51.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 9.7e-35 151.4 196 45.4
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 9.7e-35 151.4 157 50.3
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.6e-34 150.6 190 46.8
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.6e-34 150.6 193 47.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.6e-34 150.6 160 51.9
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.1e-34 150.2 157 51.0
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.1e-34 150.2 158 51.9
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.1e-34 150.2 148 55.4
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.8e-34 149.8 151 55.6
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 6.3e-34 148.7 149 53.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.2e-34 148.3 191 48.7
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 8.2e-34 148.3 192 46.4
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 8.2e-34 148.3 160 51.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.1e-33 147.9 164 51.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.1e-33 147.9 164 51.8
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.8e-33 147.1 192 45.8
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.4e-33 146.7 151 55.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.4e-33 146.7 206 44.2
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 3.1e-33 146.4 190 46.8
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.1e-33 146.0 190 46.8
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 6.9e-33 145.2 150 53.3
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 9.0e-33 144.8 214 42.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.2e-32 144.4 161 49.7
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.5e-32 144.1 162 50.6
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.0e-32 143.7 192 45.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.0e-32 143.7 191 45.0
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 3.4e-32 142.9 190 46.3
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.4e-32 142.9 256 40.2
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-31 141.4 183 48.1
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 5.0e-31 139.0 190 45.8
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 8.5e-31 138.3 158 46.2
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.1e-30 137.9 216 42.6
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.4e-30 137.5 340 34.4
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.7e-29 133.3 201 41.8
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.6e-29 132.5 93 76.3
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.1e-29 132.1 114 63.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 5.1e-28 129.0 166 48.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.5e-27 127.5 166 47.6
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.5e-27 127.5 192 42.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.9e-27 127.1 218 41.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.6e-26 124.0 246 37.4
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.4e-25 120.9 119 57.1
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.4e-25 120.9 161 43.5
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 3.1e-25 119.8 183 41.5
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.4e-24 116.3 191 39.8
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 4.5e-24 115.9 190 40.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.9e-24 115.5 228 36.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.7e-23 114.0 202 36.6
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.7e-23 114.0 166 42.8
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.5e-23 111.7 242 35.5
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-22 110.9 55 98.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.1e-21 107.1 132 50.0
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 5.7e-19 99.0 63 76.2
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.8e-18 96.7 198 34.8
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 3.0e-12 76.6 147 32.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 2.2e-10 70.5 155 29.7
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.7e-10 69.7 175 32.6
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.0e-09 65.5 86 45.3
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.7e-07 60.8 176 29.0


User provided reference genes

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