Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 7.8e-35 149.8 71 100.0
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 2.9e-34 147.9 71 98.6
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 2.9e-34 147.9 71 98.6
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 3.8e-34 147.5 71 98.6
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 3.8e-34 147.5 71 98.6
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 3.8e-34 147.5 71 98.6
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.5e-33 145.6 71 95.8
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 5.6e-33 143.7 71 94.4
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 9.5e-33 142.9 71 94.4
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 9.5e-33 142.9 71 94.4
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 9.5e-33 142.9 71 94.4
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.4e-31 139.0 71 90.1
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 6.8e-31 136.7 71 88.7
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 6.8e-31 136.7 71 88.7
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 1.2e-30 136.0 71 88.7
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.5e-30 135.6 71 90.1
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 87.3
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 87.3
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 87.3
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 3.4e-30 134.4 70 87.1
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 3.4e-30 134.4 71 87.3
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 7.5e-30 133.3 71 87.3
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 7.5e-30 133.3 70 85.7
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 85.9
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 1.7e-29 132.1 71 87.3
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 1.7e-29 132.1 68 89.7
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 2.2e-29 131.7 68 85.3
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 4.9e-29 130.6 68 83.8
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 4.9e-29 130.6 68 86.8
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 4.9e-29 130.6 68 86.8
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 6.4e-29 130.2 71 85.9
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 86.8
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 86.8
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 85.3
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 85.3
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 85.3
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 85.3
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 1.1e-28 129.4 68 85.3
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.1e-28 129.4 68 83.8
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 1.4e-28 129.0 68 85.3
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.9e-28 128.6 68 83.8
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 1.9e-28 128.6 68 82.4
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 68 83.8
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 68 83.8
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 68 83.8
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 3.2e-28 127.9 68 83.8
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 3.2e-28 127.9 68 82.4
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 3.2e-28 127.9 68 80.9
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 3.2e-28 127.9 68 85.3
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 83.8
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 82.4
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 83.8
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 80.9
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 5.4e-28 127.1 67 83.6
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 7.0e-28 126.7 69 84.1
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 9.2e-28 126.3 68 82.4
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 9.2e-28 126.3 68 82.4
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 9.2e-28 126.3 68 83.8
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 9.2e-28 126.3 68 82.4
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 9.2e-28 126.3 68 82.4
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 82.4
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 1.2e-27 125.9 67 83.6
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 1.2e-27 125.9 71 78.9
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 79.4
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 79.4
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 79.4
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 1.6e-27 125.6 71 80.3
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 2.0e-27 125.2 67 86.6
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 2.0e-27 125.2 67 86.6
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 2.0e-27 125.2 68 79.4
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.0e-27 125.2 68 82.4
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.7e-27 124.8 68 80.9
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.7e-27 124.8 68 80.9
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.7e-27 124.8 68 80.9
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.7e-27 124.8 66 83.3
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.7e-27 124.8 66 83.3
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 3.5e-27 124.4 68 80.9
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.6e-27 124.0 68 79.4
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 4.6e-27 124.0 69 85.5
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 4.6e-27 124.0 68 80.9
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 6.0e-27 123.6 71 81.7
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 6.0e-27 123.6 66 84.8
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 6.0e-27 123.6 67 80.6
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 6.0e-27 123.6 68 82.4
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 7.8e-27 123.2 68 80.9
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 1.0e-26 122.9 67 82.1
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 1.7e-26 122.1 75 76.0
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 2.3e-26 121.7 61 90.2
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 2.3e-26 121.7 67 80.6
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 3.0e-26 121.3 68 80.9
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 3.0e-26 121.3 62 87.1
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 3.0e-26 121.3 68 79.4
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 3.0e-26 121.3 65 81.5
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 3.9e-26 120.9 65 83.1
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 5.0e-26 120.6 67 80.6
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 5.0e-26 120.6 68 77.9
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 6.6e-26 120.2 61 88.5
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 6.6e-26 120.2 62 87.1
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 8.6e-26 119.8 68 80.9
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 8.6e-26 119.8 63 85.7
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 1.1e-25 119.4 65 81.5
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-25 119.0 61 88.5
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.5e-25 119.0 64 81.2
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.5e-25 119.0 68 75.0
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 1.9e-25 118.6 67 74.6
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 1.9e-25 118.6 61 88.5
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 2.5e-25 118.2 61 86.9
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.5e-25 118.2 65 80.0
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 2.5e-25 118.2 61 88.5
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 2.5e-25 118.2 68 77.9
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 4.3e-25 117.5 67 77.6
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 4.3e-25 117.5 61 86.9
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 5.6e-25 117.1 67 76.1
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 9.5e-25 116.3 61 85.2
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 1.2e-24 115.9 65 81.5
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 1.2e-24 115.9 69 76.8
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 1.6e-24 115.5 63 81.0
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.1e-24 115.2 62 80.6
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 2.8e-24 114.8 66 78.8
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 2.8e-24 114.8 61 82.0
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 3.6e-24 114.4 60 86.7
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 6.2e-24 113.6 61 80.3
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 6.2e-24 113.6 66 77.3
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 6.2e-24 113.6 66 77.3
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 8.0e-24 113.2 62 85.5
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.0e-24 113.2 61 80.3
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.0e-24 113.2 61 80.3
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 8.0e-24 113.2 63 77.8
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 1.4e-23 112.5 69 78.3
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.8e-23 112.1 61 78.7
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 1.8e-23 112.1 65 78.5
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 1.8e-23 112.1 65 78.5
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.8e-23 112.1 59 83.1
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 2.3e-23 111.7 61 78.7
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 3.1e-23 111.3 61 82.0
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 5.2e-23 110.5 62 83.9
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 5.2e-23 110.5 62 83.9
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 5.2e-23 110.5 61 82.0
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 6.8e-23 110.2 63 76.2
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 8.9e-23 109.8 65 75.4
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 8.9e-23 109.8 59 83.1
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 1.2e-22 109.4 60 80.0
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 1.5e-22 109.0 64 71.9
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 3.4e-22 107.8 59 78.0
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 4.4e-22 107.5 57 84.2
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 7.5e-22 106.7 64 71.9
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 7.5e-22 106.7 61 78.7
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 9.8e-22 106.3 71 66.2
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 9.8e-22 106.3 59 79.7
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 2.2e-21 105.1 62 79.0
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 4.9e-21 104.0 62 75.8
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 1.1e-20 102.8 64 64.1
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 5.4e-20 100.5 63 71.4
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 1.2e-19 99.4 60 71.7
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 2.3e-18 95.1 67 68.7
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 8.6e-18 93.2 59 71.2
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.9e-17 92.0 70 54.3
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 3.3e-17 91.3 46 87.0
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 9.5e-17 89.7 70 52.9
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 1.2e-16 89.4 48 77.1
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 2.1e-16 88.6 45 88.9
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 8.1e-16 86.7 46 82.6
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 8.1e-16 86.7 47 76.6
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.2e-14 82.8 60 55.0
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.2e-14 82.8 60 55.0
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 1.5e-14 82.4 64 54.7
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 1.4e-12 75.9 67 47.8
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 2.4e-12 75.1 57 50.9
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 5.4e-12 73.9 50 62.0
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 1.6e-11 72.4 53 60.4
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 6.0e-11 70.5 60 60.0
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 6.0e-11 70.5 63 55.6
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 3.9e-10 67.8 61 49.2
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 3.1e-07 58.2 50 48.0
QL05p083294 Quercus lobata HOM05D004074 ORTHO05D004717 5.8e-06 53.9 51 54.9


User provided reference genes

Program Settings