Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.5e-101 372.9 186 100.0
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-51 206.8 113 91.2
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.7e-49 199.9 114 90.4
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-49 199.5 114 90.4
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-49 199.5 114 90.4
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.2e-49 199.5 114 90.4
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.1e-47 191.4 113 89.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.0e-46 189.1 113 86.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.2e-46 188.3 113 86.7
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.7e-46 188.0 113 86.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.8e-44 181.8 113 84.1
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.8e-43 179.9 113 81.4
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.0e-41 174.1 113 79.6
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-41 173.7 113 79.6
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-41 173.7 113 79.6
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-41 173.3 113 78.8
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-41 172.9 113 77.9
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.8e-41 172.2 113 79.6
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 6.5e-41 171.4 113 77.9
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 6.5e-41 171.4 113 78.8
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.5e-41 171.0 113 78.8
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-40 170.2 113 77.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.5e-40 170.2 113 77.0
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-40 169.9 113 76.1
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.2e-40 169.1 113 76.1
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.2e-40 168.7 113 77.0
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 4.2e-40 168.7 113 77.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 7.2e-40 167.9 113 77.0
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 4.7e-39 165.2 113 77.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 6.1e-39 164.9 119 69.7
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.5e-32 142.9 119 61.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.5e-32 142.9 119 59.7
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 3.2e-32 142.5 119 61.3
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.2e-32 142.5 119 61.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.6e-31 140.2 119 57.1
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.1e-31 139.8 118 57.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.1e-31 139.8 119 59.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.6e-31 139.0 94 77.7
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.6e-31 139.0 119 58.0
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.7e-31 138.7 119 58.0
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 6.1e-31 138.3 119 58.0
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 6.1e-31 138.3 119 57.1
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 6.1e-31 138.3 119 59.7
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 6.1e-31 138.3 119 56.3
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 8.0e-31 137.9 119 56.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.0e-30 137.5 118 55.9
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.0e-30 137.5 119 58.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.4e-30 137.1 119 57.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.3e-30 136.3 114 58.8
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.3e-30 136.3 119 56.3
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 3.0e-30 136.0 119 53.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 3.0e-30 136.0 119 57.1
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 3.0e-30 136.0 119 52.9
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.0e-30 135.6 119 52.9
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 4.0e-30 135.6 113 57.5
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 4.0e-30 135.6 119 56.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 6.8e-30 134.8 119 56.3
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 8.8e-30 134.4 113 57.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.2e-29 134.0 119 54.6
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.2e-29 134.0 118 56.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.5e-29 133.7 113 54.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.5e-29 133.7 117 55.6
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.5e-29 133.7 119 56.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.5e-29 133.7 119 55.5
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.5e-29 133.7 113 55.8
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.0e-29 133.3 113 56.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.0e-29 133.3 119 54.6
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.0e-29 133.3 119 54.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.4e-29 132.5 120 53.3
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 4.4e-29 132.1 119 55.5
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 5.7e-29 131.7 119 52.1
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.7e-29 131.7 119 56.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 5.7e-29 131.7 119 54.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 7.5e-29 131.3 118 54.2
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.3e-28 130.6 119 52.9
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.7e-28 130.2 113 57.5
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.2e-28 129.8 119 52.1
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.2e-28 129.8 119 56.3
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.8e-28 129.4 119 52.1
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.8e-28 129.4 114 57.0
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.8e-28 129.4 117 53.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.8e-28 129.4 119 51.3
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.3e-28 127.9 118 52.5
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.1e-27 127.5 119 54.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.8e-27 126.7 118 53.4
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.8e-27 126.7 119 52.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.8e-27 126.7 119 51.3
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.4e-27 126.3 119 53.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-27 126.3 119 51.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-27 125.9 119 51.3
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-27 125.9 119 51.3
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 4.1e-27 125.6 119 52.1
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.4e-27 125.2 117 54.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 5.4e-27 125.2 119 47.1
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 7.0e-27 124.8 119 50.4
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 9.1e-27 124.4 119 50.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 9.1e-27 124.4 119 50.4
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.2e-26 124.0 119 50.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.0e-26 123.2 119 47.1
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 2.0e-26 123.2 121 48.8
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.5e-26 122.5 119 46.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.5e-26 122.5 119 50.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.5e-26 122.1 119 45.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 5.9e-26 121.7 119 47.1
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.7e-26 121.3 119 50.4
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 7.7e-26 121.3 113 53.1
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.3e-25 119.8 119 49.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 3.8e-25 119.0 119 47.1
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.0e-25 118.6 130 47.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 6.6e-25 118.2 111 53.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 8.6e-25 117.9 112 50.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.1e-24 117.5 96 61.5
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.5e-24 117.1 119 45.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.9e-24 116.7 130 46.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.9e-24 116.7 119 44.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.8e-23 112.8 106 50.9
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.0e-22 110.9 100 53.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 5.7e-21 105.1 119 45.4
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 7.5e-21 104.8 89 55.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.4e-19 100.5 127 40.9
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.1e-19 99.0 99 52.5
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 4.1e-19 99.0 120 44.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 9.2e-19 97.8 75 62.7
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.0e-18 96.7 120 40.0
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.8e-18 94.7 112 41.1
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-17 94.4 118 39.8
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-17 93.2 110 40.9
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.3e-16 88.2 118 34.7
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.0e-15 84.7 75 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-14 84.3 83 42.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 3.1e-14 82.8 92 42.4
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.4e-11 73.2 111 33.3
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-08 64.3 112 28.6
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.3e-08 62.8 111 27.9
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.3e-08 62.4 111 27.0
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-08 62.4 112 28.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.6e-08 62.0 111 30.6
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-07 60.1 111 27.0


User provided reference genes

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