Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.3e-252 875.9 444 100.0
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 8.7e-225 783.5 455 88.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 5.6e-224 780.8 449 89.3
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 2.8e-223 778.5 449 89.1
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 7.6e-221 770.4 452 87.4
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 6.6e-217 757.3 459 86.5
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-216 756.5 455 86.6
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 3.3e-216 755.0 459 86.3
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 2.8e-215 751.9 458 85.4
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.3e-212 743.0 459 84.3
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 8.7e-209 730.3 451 83.6
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.1e-208 729.9 459 83.0
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.5e-208 728.8 456 82.5
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.8e-206 722.6 457 82.1
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.9e-196 688.7 458 77.1
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 3.0e-193 678.7 360 95.0
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 3.0e-193 678.7 360 95.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-188 663.3 344 97.1
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.1e-178 629.4 455 73.0
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.0e-177 627.1 365 84.9
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 5.1e-177 624.8 451 72.5
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 5.1e-177 624.8 366 84.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.0e-176 622.9 450 72.4
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.7e-175 619.8 362 85.9
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.2e-175 619.4 455 71.6
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 3.7e-175 618.6 363 83.7
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 6.3e-175 617.8 453 72.4
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 8.2e-175 617.5 377 81.7
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.8e-174 616.3 362 85.6
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-174 615.9 371 83.3
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-174 615.9 371 83.3
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.1e-174 615.5 367 84.2
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-174 615.5 367 84.2
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 3.1e-174 615.5 362 85.9
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 7.0e-174 614.4 370 83.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.5e-173 613.2 361 83.9
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.0e-173 612.8 367 83.7
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 3.5e-173 612.1 410 76.6
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-172 609.8 388 79.9
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.9e-172 609.0 373 81.2
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 5.0e-172 608.2 375 81.3
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.1e-171 607.1 365 82.5
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 3.2e-171 605.5 364 82.1
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 3.2e-171 605.5 397 78.6
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 7.2e-171 604.4 360 82.5
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.2e-170 603.6 383 78.6
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.6e-170 603.2 361 81.2
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.6e-170 603.2 362 82.3
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 3.6e-170 602.1 406 75.6
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 6.1e-170 601.3 361 82.3
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.4e-169 600.1 366 81.7
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 6.7e-169 597.8 361 82.5
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 6.7e-169 597.8 377 79.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.1e-168 597.0 363 81.5
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 3.3e-168 595.5 382 78.0
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 5.7e-168 594.7 368 80.2
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 7.4e-168 594.3 366 82.2
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 3.7e-167 592.0 359 81.1
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.1e-166 590.5 359 80.8
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 9.1e-166 587.4 364 80.8
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.2e-165 587.0 378 78.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.0e-165 586.3 371 77.6
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.6e-165 585.9 382 77.2
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.6e-165 585.9 403 73.9
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.9e-165 584.7 382 77.5
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.3e-164 583.6 397 74.6
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.3e-164 583.6 428 70.8
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.2e-164 582.8 360 81.7
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 2.2e-164 582.8 375 78.1
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.8e-164 582.0 357 79.3
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.8e-164 582.0 376 77.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 5.0e-164 581.6 375 77.9
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.2e-162 577.0 350 81.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 6.1e-162 574.7 399 73.9
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.4e-161 573.5 344 82.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 5.2e-161 571.6 344 82.3
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.2e-160 570.5 365 78.6
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 2.6e-160 569.3 360 83.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 7.5e-160 567.8 344 82.3
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.7e-159 566.6 373 77.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 4.8e-159 565.1 353 79.3
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.4e-158 563.5 366 76.8
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 3.1e-158 562.4 370 76.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 4.1e-158 562.0 366 76.8
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 9.1e-158 560.8 368 76.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.0e-156 557.4 397 72.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 8.5e-156 554.3 338 81.4
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 8.5e-156 554.3 396 71.5
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.5e-155 552.7 465 63.7
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 7.2e-155 551.2 417 71.0
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.3e-153 546.2 368 75.8
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.3e-153 546.2 359 74.9
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 7.5e-152 541.2 337 78.9
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 2.2e-151 539.7 339 80.2
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 3.7e-151 538.9 365 74.2
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.3e-151 537.7 456 61.8
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.1e-147 527.3 379 72.8
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.4e-142 510.4 297 85.2
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 3.1e-142 509.2 300 83.7
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.4e-142 508.4 361 70.6
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 7.0e-142 508.1 312 81.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.5e-141 505.4 376 70.5
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 3.9e-140 502.3 430 63.0
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.6e-140 501.5 328 77.7
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.4e-137 493.8 312 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 4.0e-137 492.3 339 71.1
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.2e-137 491.9 353 70.3
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.0e-136 490.0 339 71.1
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 4.9e-135 485.3 338 70.7
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.0e-133 479.9 292 81.5
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 3.1e-129 466.1 271 85.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 8.9e-129 464.5 339 67.8
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.4e-126 455.3 338 68.6
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.1e-124 448.7 415 60.5
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.5e-123 447.2 314 74.2
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 8.1e-122 441.4 259 83.0
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 8.3e-119 431.4 277 77.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.2e-112 411.0 251 79.3
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 6.9e-97 358.6 208 85.6
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 9.3e-94 348.2 228 75.0
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 4.6e-93 345.9 186 94.6
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.0e-87 328.2 185 85.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.1e-75 288.1 358 51.7
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.3e-74 284.6 335 45.7
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.3e-71 274.6 347 43.5
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.3e-63 248.1 132 89.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.4e-59 233.0 143 81.8
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.0e-56 224.2 334 36.5
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 6.7e-52 209.1 124 80.6
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 9.1e-49 198.7 372 36.3
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.5e-38 164.1 109 77.1
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.6e-37 161.4 116 71.6
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 6.1e-37 159.5 104 75.0
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.7e-34 150.2 130 63.8
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.0e-28 132.1 101 62.4
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-27 127.5 80 81.2
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-27 127.5 80 81.2
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.6e-27 127.5 80 81.2
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 5.7e-27 126.3 84 72.6
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.2e-26 124.4 79 81.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 3.7e-26 123.6 80 78.8
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 3.7e-26 123.6 80 78.8
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 1.4e-25 121.7 80 77.5
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.0e-24 117.9 64 87.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.5e-24 117.1 78 71.8
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.5e-22 110.9 107 56.1
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 6.2e-21 106.3 125 44.8
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 6.8e-20 102.8 64 82.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 4.1e-17 93.6 88 59.1
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 8.6e-15 85.9 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 3.6e-13 80.5 43 93.0
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 4.4e-11 73.6 74 54.1
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.1e-09 66.2 36 86.1
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 8.6e-07 59.3 35 77.1
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.6e-07 59.3 37 70.3
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.1e-06 58.9 40 65.0
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 5.6e-06 56.6 63 49.2


User provided reference genes

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