Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 2.3e-47 192.2 120 100.0
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-41 172.2 120 80.8
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 7.2e-41 170.6 120 79.2
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 7.2e-41 170.6 120 79.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 7.2e-41 170.6 120 79.2
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 3.6e-40 168.3 120 77.5
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 3.6e-40 168.3 120 77.5
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 8.5e-34 147.1 120 77.5
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 4.8e-29 131.3 120 67.5
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 7.0e-28 127.5 120 65.8
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 7.0e-28 127.5 120 65.8
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 7.0e-28 127.5 120 65.8
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.2e-27 126.7 120 64.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.6e-27 126.3 123 62.6
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.6e-27 125.6 121 66.1
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 7.7e-27 124.0 120 60.8
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 3.8e-26 121.7 120 68.3
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 3.8e-26 121.7 120 68.3
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-25 120.2 120 67.5
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 7.5e-22 107.5 118 58.5
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-21 105.1 106 64.2
BraA08t32331Z Brassica rapa HOM05D003595 ORTHO05D004132 1.1e-20 103.6 119 64.7
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 3.5e-19 98.6 122 61.5
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 5.2e-15 84.7 65 67.7
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.6e-11 73.2 53 64.2
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 5.9e-11 71.2 53 62.3
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.3e-10 70.1 53 60.4
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 5.0e-10 68.2 131 37.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 6.6e-10 67.8 92 45.7
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 6.6e-10 67.8 92 45.7
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 6.6e-10 67.8 53 58.5
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 6.6e-10 67.8 92 45.7
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 6.6e-10 67.8 92 45.7
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.5e-09 66.6 53 56.6
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 3.3e-09 65.5 108 40.7
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 3.3e-09 65.5 119 40.3
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 4.2e-09 65.1 54 57.4
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 7.2e-09 64.3 89 44.9
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-08 63.5 54 55.6
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.6e-08 63.2 137 34.3
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.1e-08 62.8 50 60.0
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 3.6e-08 62.0 117 41.9
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 3.6e-08 62.0 54 53.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 3.6e-08 62.0 75 44.0
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 4.7e-08 61.6 53 54.7
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 6.1e-08 61.2 50 58.0
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 8.0e-08 60.8 70 45.7
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.4e-07 60.1 136 35.3
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.4e-07 60.1 102 38.2
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.3e-07 59.3 54 51.9
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 2.3e-07 59.3 103 38.8
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.0e-07 58.9 134 35.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 8.9e-07 57.4 116 35.3
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 2.0e-06 56.2 57 49.1
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.6e-06 55.8 54 48.1
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.4e-06 55.1 110 35.5
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 4.4e-06 55.1 56 46.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.4e-06 55.1 122 32.8
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.4e-06 55.1 115 33.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 9.8e-06 53.9 54 44.4
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 9.8e-06 53.9 116 32.8


User provided reference genes

Program Settings