Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11219 Brassica carinata HOM05D011584 ORTHO05D016702 7.7e-120 433.7 203 100.0
BcaC02g10996 Brassica carinata HOM05D011584 ORTHO05D016702 1.6e-80 303.1 201 74.6
BcaB08g35295 Brassica carinata HOM05D011584 ORTHO05D000199 4.4e-67 258.5 141 87.2
BcaB05g23428 Brassica carinata HOM05D011584 ORTHO05D091061 1.2e-64 250.4 158 80.4
BcaC03g16253 Brassica carinata HOM05D011584 ORTHO05D016702 1.2e-56 223.8 124 84.7
C02p42380 Brassica napus HOM05D011584 ORTHO05D016702 7.8e-56 221.1 190 61.1
BolC2t10066H Brassica oleracea HOM05D011584 ORTHO05D016702 1.9e-54 216.5 185 60.0
BcaC03g16252 Brassica carinata HOM05D011584 ORTHO05D016702 8.1e-53 211.1 201 56.2
C04p22370 Brassica napus HOM05D001379 ORTHO05D000199 1.8e-52 209.9 140 75.0
BcaC09g49779 Brassica carinata HOM05D011584 ORTHO05D016702 4.2e-49 198.7 198 55.6
A02p27360 Brassica napus HOM05D011584 ORTHO05D016702 6.2e-45 184.9 185 54.6
BraA02t07764Z Brassica rapa HOM05D011584 ORTHO05D016702 6.2e-45 184.9 185 54.6
Thhalv10006392m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 1.1e-25 120.9 181 40.3
BolC1t03241H Brassica oleracea HOM05D011584 ORTHO05D016702 8.7e-23 111.3 82 67.1
BcaC07g39915 Brassica carinata HOM05D000390 ORTHO05D001192 5.0e-18 95.5 182 31.9
A09p48920 Brassica napus HOM05D000018 ORTHO05D001513 5.5e-17 92.0 184 31.5
BraA09t40347Z Brassica rapa HOM05D000018 ORTHO05D001513 5.5e-17 92.0 184 31.5
Carub.0002s1269 Capsella rubella HOM05D000390 ORTHO05D001192 3.0e-15 86.3 144 31.2
BolC8t50749H Brassica oleracea HOM05D000018 ORTHO05D001513 3.9e-15 85.9 120 35.0
Carub.0002s1270 Capsella rubella HOM05D000390 ORTHO05D001192 3.9e-15 85.9 143 30.1
BcaB06g28030 Brassica carinata HOM05D000390 ORTHO05D001192 5.1e-15 85.5 194 32.0
THA.LOC104825614 Tarenaya hassleriana HOM05D000390 ORTHO05D001192 1.1e-14 84.3 142 33.8
AL2G24600 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.5e-14 84.0 154 32.5
THA.LOC104822444 Tarenaya hassleriana HOM05D000390 ORTHO05D001192 2.0e-14 83.6 143 35.7
Carub.0007s3313 Capsella rubella HOM05D000390 ORTHO05D001192 2.5e-14 83.2 179 27.4
Sp5g24750 Schrenkiella parvula HOM05D000390 ORTHO05D001192 2.5e-14 83.2 161 29.2
Carub.0005s1231 Capsella rubella HOM05D000390 ORTHO05D001192 4.3e-14 82.4 141 31.9
Carub.0002s1264 Capsella rubella HOM05D000390 ORTHO05D001192 5.7e-14 82.0 176 28.4
Carub.0007s3308 Capsella rubella HOM05D000390 ORTHO05D001192 7.4e-14 81.6 161 30.4
TPR.G5333 Trifolium pratense HOM05D000390 ORTHO05D001192 1.7e-13 80.5 140 27.9
BcaB01g00046 Brassica carinata HOM05D000390 ORTHO05D001192 2.8e-13 79.7 155 32.9
Thhalv10027852m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.8e-13 79.7 198 28.3
A04p11090 Brassica napus HOM05D000390 ORTHO05D001192 1.8e-12 77.0 188 28.2
RcHm_v2.0_Chr3g0493571 Rosa chinensis HOM05D000390 ORTHO05D001192 1.8e-12 77.0 144 31.9
AL7G53030 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.4e-12 76.6 190 27.9
Sp5g21605 Schrenkiella parvula HOM05D000390 ORTHO05D001192 2.4e-12 76.6 156 31.4
AL7G53060 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.1e-12 76.3 145 31.0
AT1G66620 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 5.3e-12 75.5 149 26.2
BcaB02g08022 Brassica carinata HOM05D000390 ORTHO05D001192 5.3e-12 75.5 143 30.8
Thhalv10027864m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 9.1e-12 74.7 155 28.4
Manes.02G074100 Manihot esculenta HOM05D000390 ORTHO05D001192 9.1e-12 74.7 146 30.8
A04p19380 Brassica napus HOM05D000390 ORTHO05D018654 1.5e-11 73.9 123 34.1
AL7G46870 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.0e-11 73.6 150 26.0
Thhalv10027866m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.0e-11 73.6 148 30.4
FvH4_1g29100 Fragaria vesca HOM05D000390 ORTHO05D001192 2.6e-11 73.2 145 31.0
FAN26G2380 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.6e-11 73.2 145 31.0
Carub.0007s3310 Capsella rubella HOM05D000390 ORTHO05D001192 3.4e-11 72.8 182 29.7
FAN23G1779 Fragaria x ananassa HOM05D000390 ORTHO05D001192 5.9e-11 72.0 145 30.3
Potri.004G091900 Populus trichocarpa HOM05D000390 ORTHO05D001192 1.3e-10 70.9 133 30.8
Carub.0006s2401 Capsella rubella HOM05D000390 ORTHO05D001192 2.2e-10 70.1 181 27.6
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 2.2e-10 70.1 119 29.4
SGA_v2.0_scaffold49G18139 Striga asiatica HOM05D000390 ORTHO05D001192 2.2e-10 70.1 157 31.8
AT5G37870 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 2.9e-10 69.7 198 26.3
FvH4_2g04470 Fragaria vesca HOM05D000390 ORTHO05D001192 2.9e-10 69.7 146 28.8
Lsat_1_v5_gn_4_155121 Lactuca sativa HOM05D000390 ORTHO05D001192 2.9e-10 69.7 173 28.3
RcHm_v2.0_Chr6g0253841 Rosa chinensis HOM05D000390 ORTHO05D001192 2.9e-10 69.7 130 30.8
AL8G39760 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.8e-10 69.3 196 28.6
AT5G37910 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 3.8e-10 69.3 149 26.2
RcHm_v2.0_Chr2g0111691 Rosa chinensis HOM05D000390 ORTHO05D001192 3.8e-10 69.3 152 30.3
BcaB03g15257 Brassica carinata HOM05D000390 ORTHO05D001192 5.0e-10 68.9 143 28.7
AL7G46850 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 8.5e-10 68.2 150 24.0
Solyc00g500091.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 8.5e-10 68.2 142 29.6
Solyc00g500096.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 8.5e-10 68.2 142 29.6
vmacro05500 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 8.5e-10 68.2 146 28.8
RcHm_v2.0_Chr6g0252861 Rosa chinensis HOM05D000390 ORTHO05D001192 1.1e-09 67.8 129 26.4
AT5G62800 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 1.4e-09 67.4 207 27.1
Carub.0008s2352 Capsella rubella HOM05D000390 ORTHO05D001192 1.9e-09 67.0 182 26.4
Prupe.3G152000 Prunus persica HOM05D000390 ORTHO05D001192 1.9e-09 67.0 132 32.6
Solyc03g034455.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 1.9e-09 67.0 142 29.6
AT1G66660 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 2.5e-09 66.6 147 29.9
Carub.0002s1285 Capsella rubella HOM05D000390 ORTHO05D001192 2.5e-09 66.6 192 26.6
Rhsim10G0078700 Rhododendron simsii HOM05D000390 ORTHO05D001192 2.5e-09 66.6 146 28.1
A07p36020 Brassica napus HOM05D000390 ORTHO05D001192 3.2e-09 66.2 140 27.9
BraA07t31182Z Brassica rapa HOM05D000390 ORTHO05D001192 3.2e-09 66.2 140 27.9
VMungo0251G2516 Vigna mungo HOM05D000390 ORTHO05D001192 4.2e-09 65.9 143 25.2
BcaC08g46103 Brassica carinata HOM05D000390 ORTHO05D001192 5.5e-09 65.5 151 29.8
C06p39890 Brassica napus HOM05D000390 ORTHO05D001192 5.5e-09 65.5 151 29.8
BolC6t39079H Brassica oleracea HOM05D000390 ORTHO05D001192 5.5e-09 65.5 151 29.8
DCAR_010733 Daucus carota HOM05D000390 ORTHO05D001192 5.5e-09 65.5 189 25.9
Glyma.08G079600 Glycine max HOM05D000390 ORTHO05D001192 5.5e-09 65.5 129 31.0
Sp7g04040 Schrenkiella parvula HOM05D000390 ORTHO05D001192 9.4e-09 64.7 134 28.4
Phvul.002G201000 Phaseolus vulgaris HOM05D000390 ORTHO05D001192 1.2e-08 64.3 143 25.2
PGSC0003DMG402016693 Solanum tuberosum HOM05D007651 ORTHO05D001192 1.2e-08 64.3 132 28.8
Cpa.g.sc116.13 Carica papaya HOM05D000390 ORTHO05D001192 1.6e-08 63.9 144 26.4
FAN27G0122 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.1e-08 63.5 148 29.7
Ah.10g037900 Amaranthus hybridus HOM05D000390 ORTHO05D001192 2.7e-08 63.2 196 24.5
CiPaw.03G067600 Carya illinoinensis HOM05D000390 ORTHO05D001192 3.6e-08 62.8 130 32.3
Sopen03g007330 Solanum pennellii HOM05D000390 ORTHO05D001192 4.7e-08 62.4 142 28.2
CARHR058650 Cardamine hirsuta HOM05D000390 ORTHO05D001192 6.1e-08 62.0 108 25.9
FAN19G0598 Fragaria x ananassa HOM05D000390 ORTHO05D001192 6.1e-08 62.0 151 30.5
PGSC0003DMG401016693 Solanum tuberosum HOM05D000390 ORTHO05D001192 6.1e-08 62.0 142 28.2
A07p33500 Brassica napus HOM05D000390 ORTHO05D001192 7.9e-08 61.6 143 30.1
BraA07t30976Z Brassica rapa HOM05D000390 ORTHO05D001192 7.9e-08 61.6 143 30.1
Potri.017G148100 Populus trichocarpa HOM05D000390 ORTHO05D001192 7.9e-08 61.6 146 26.0
CAN.G11.17 Capsicum annuum HOM05D000390 ORTHO05D001192 1.8e-07 60.5 128 27.3
Solyc03g034450.4 Solanum lycopersicum HOM05D000390 ORTHO05D001192 2.3e-07 60.1 142 27.5
vmacro05499 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 2.3e-07 60.1 146 28.1
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 3.9e-07 59.3 115 27.0
BcaB03g14740 Brassica carinata HOM05D000390 ORTHO05D001192 3.9e-07 59.3 129 24.8
Rhsim08G0085400 Rhododendron simsii HOM05D000390 ORTHO05D001192 5.1e-07 58.9 129 27.1
BcaB03g15258 Brassica carinata HOM05D000390 ORTHO05D001192 8.8e-07 58.2 138 28.3
RcHm_v2.0_Chr6g0252871 Rosa chinensis HOM05D000390 ORTHO05D001192 8.8e-07 58.2 129 26.4
RcHm_v2.0_Chr6g0253921 Rosa chinensis HOM05D000390 ORTHO05D001192 1.1e-06 57.8 148 27.7
Ciclev10013856m.g Citrus clementina HOM05D000390 ORTHO05D001192 1.5e-06 57.4 119 26.9
Solyc00g032030.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 3.3e-06 56.2 109 30.3
MELO3C022842.2 Cucumis melo HOM05D000390 ORTHO05D001192 4.4e-06 55.8 129 27.1
arahy.Tifrunner.gnm1.ann1.Y6I14R Arachis hypogaea HOM05D000390 ORTHO05D001192 5.7e-06 55.5 140 25.0


User provided reference genes

Program Settings