Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 8.2e-208 726.9 381 100.0
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 8.8e-117 424.5 444 60.8
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 2.2e-115 419.9 441 60.3
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.6e-110 402.5 497 53.5
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 6.3e-107 391.7 444 55.0
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.6e-105 386.3 521 51.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 5.5e-103 378.6 504 51.8
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.0e-101 374.4 496 51.8
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-101 374.4 496 51.8
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.0e-101 374.4 496 51.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 9.7e-100 367.9 486 52.7
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 8.2e-99 364.8 501 50.1
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 8.5e-96 354.8 392 58.7
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 8.3e-91 338.2 532 47.7
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 4.1e-90 335.9 441 51.5
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 4.0e-85 319.3 301 66.8
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 8.0e-78 295.0 385 53.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.3e-77 293.5 327 60.2
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 8.3e-75 285.0 277 65.7
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.0e-56 224.9 184 72.8
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.6e-52 210.3 396 40.9
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.4e-50 203.8 291 45.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 5.4e-50 202.6 291 45.4
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.6e-49 201.1 394 41.1
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 3.5e-49 199.9 394 40.9
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 6.0e-49 199.1 347 41.8
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.7e-48 197.6 353 41.6
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.7e-48 197.6 311 44.7
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 3.9e-48 196.4 427 37.9
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 6.6e-48 195.7 407 39.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.3e-47 193.4 322 41.9
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 4.3e-47 193.0 246 45.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 7.3e-47 192.2 357 42.9
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.8e-46 190.3 249 48.6
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.8e-46 190.3 338 41.4
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 6.2e-46 189.1 217 53.9
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 6.2e-46 189.1 391 39.1
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 8.1e-46 188.7 349 41.3
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.1e-46 188.7 250 48.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.1e-45 188.3 259 45.2
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.4e-45 188.0 334 42.2
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 2.4e-45 187.2 392 40.3
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.4e-45 187.2 303 41.9
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.1e-45 186.8 283 43.5
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.1e-45 186.8 307 40.7
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 6.8e-45 185.7 395 38.5
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 6.8e-45 185.7 334 41.0
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 6.8e-45 185.7 312 43.3
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 6.8e-45 185.7 358 41.6
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 8.9e-45 185.3 388 38.7
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 8.9e-45 185.3 308 42.2
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 8.9e-45 185.3 392 38.3
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.2e-44 184.9 266 45.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.5e-44 184.5 216 53.7
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.5e-44 184.5 324 43.5
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.0e-44 184.1 335 39.7
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.0e-44 184.1 215 53.0
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.4e-44 183.3 321 41.7
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 3.4e-44 183.3 250 46.0
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.4e-44 183.0 270 44.1
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 5.8e-44 182.6 396 38.1
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 7.6e-44 182.2 343 39.7
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 7.6e-44 182.2 326 40.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 7.6e-44 182.2 384 39.6
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.3e-43 181.4 337 40.1
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.3e-43 181.4 380 38.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.7e-43 181.0 303 41.6
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 2.2e-43 180.6 402 37.1
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 2.9e-43 180.3 370 40.0
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 3.8e-43 179.9 294 42.2
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 8.4e-43 178.7 246 44.3
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 2.4e-42 177.2 390 36.7
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 4.2e-42 176.4 236 47.0
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 5.4e-42 176.0 380 39.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 5.4e-42 176.0 333 38.4
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 9.3e-42 175.3 292 42.1
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.1e-41 174.1 382 37.4
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 2.1e-41 174.1 346 39.9
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.7e-41 173.7 396 37.6
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 6.0e-41 172.6 387 38.8
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.3e-40 171.4 250 44.0
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.0e-40 170.2 322 41.0
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.6e-40 169.1 248 46.0
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 8.7e-40 168.7 331 38.7
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.9e-39 167.5 384 35.7
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.5e-39 167.2 357 38.1
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 9.6e-39 165.2 316 39.9
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 2.1e-38 164.1 218 45.9
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 4.8e-38 162.9 254 39.8
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 8.1e-38 162.2 341 38.4
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.1e-37 160.2 255 41.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 5.3e-37 159.5 241 41.9
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 9.0e-37 158.7 268 40.7
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.2e-36 158.3 399 33.8
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.5e-36 157.9 255 42.7
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.0e-36 157.5 252 38.1
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.0e-36 157.5 248 43.5
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 6.4e-35 152.5 290 40.3
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 6.4e-35 152.5 400 33.8
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.2e-33 148.3 242 39.3
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 2.1e-33 147.5 293 41.3
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 2.1e-33 147.5 293 41.3
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.1e-33 147.5 397 33.5
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.5e-33 146.7 261 38.3
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.5e-31 141.4 368 35.3
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.9e-31 141.0 242 41.7
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.3e-31 139.8 357 35.6
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 7.3e-31 139.0 178 50.0
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 9.6e-31 138.7 255 37.3
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.8e-30 137.1 252 36.9
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 2.4e-29 134.0 181 49.2
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 9.0e-29 132.1 330 33.6
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.2e-28 131.7 289 35.3
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.0e-28 131.0 245 37.6
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 2.2e-27 127.5 245 40.4
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 2.2e-27 127.5 231 35.9
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 2.1e-25 120.9 383 30.5
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.5e-25 120.2 84 76.2
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.8e-24 117.9 299 32.8
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 6.7e-24 115.9 211 38.9
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.4e-21 108.2 204 36.3
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.0e-19 102.1 176 41.5
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.9e-19 100.5 274 31.8
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 3.8e-19 100.1 278 36.3
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.4e-18 98.2 117 47.0
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 4.2e-18 96.7 306 33.0
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 9.3e-18 95.5 214 35.0
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.6e-17 94.7 271 33.9
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 2.1e-17 94.4 192 34.9
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 1.0e-16 92.0 88 63.6
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.8e-16 91.3 88 63.6
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 3.9e-16 90.1 163 39.3
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 3.9e-16 90.1 167 39.5
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 5.1e-16 89.7 101 53.5
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 8.7e-16 89.0 88 62.5
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 8.7e-16 89.0 88 62.5
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 4.3e-15 86.7 79 58.2
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.1e-14 84.3 78 55.1
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 8.2e-14 82.4 227 33.5
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.4e-13 80.9 73 56.2
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 4.1e-13 80.1 89 50.6
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 9.0e-13 79.0 109 45.0
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.2e-11 74.3 88 55.7
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 1.1e-10 72.0 121 45.5
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.9e-10 71.2 74 54.1
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 7.9e-09 65.9 305 26.6
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 5.1e-08 63.2 189 32.3
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.9e-07 61.2 121 37.2
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 9.7e-07 58.9 210 27.6
C06p01630 Brassica napus HOM05D004411 ORTHO05D032367 6.3e-06 56.2 49 67.3


User provided reference genes

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