Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 6.7e-63 243.8 121 100.0
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 1.2e-56 223.0 115 94.8
BcaB08g34774 Brassica carinata HOM05D000054 ORTHO05D000286 1.9e-41 172.6 103 88.3
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 4.4e-38 161.4 98 82.7
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 4.4e-38 161.4 98 82.7
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 4.4e-38 161.4 98 82.7
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 1.3e-37 159.8 98 81.6
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 4.9e-37 157.9 98 77.6
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 1.1e-36 156.8 98 81.6
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 1.4e-36 156.4 98 75.5
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 1.4e-36 156.4 98 75.5
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 2.4e-36 155.6 98 80.6
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 2.0e-35 152.5 98 78.6
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 5.9e-35 151.0 99 75.8
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 5.9e-35 151.0 99 75.8
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 1.0e-34 150.2 101 76.2
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 4.3e-33 144.8 98 74.5
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 5.6e-33 144.4 98 74.5
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 5.6e-33 144.4 100 74.0
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 7.3e-33 144.1 98 74.5
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.4e-31 139.8 98 72.4
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 2.6e-30 135.6 98 71.4
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 4.0e-23 111.7 105 59.0
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 4.0e-23 111.7 105 59.0
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 5.2e-23 111.3 98 59.2
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 6.8e-23 110.9 98 59.2
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 1.5e-22 109.8 101 56.4
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 5.8e-22 107.8 100 59.0
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 7.5e-22 107.5 102 55.9
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 7.5e-22 107.5 102 55.9
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 7.5e-22 107.5 98 59.2
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 1.3e-21 106.7 98 58.2
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.3e-21 106.7 100 58.0
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.3e-21 106.7 100 58.0
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 2.2e-21 105.9 108 52.8
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 2.9e-21 105.5 101 55.4
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 4.9e-21 104.8 102 55.9
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 8.3e-21 104.0 99 59.6
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.1e-20 103.6 102 54.9
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 1.4e-20 103.2 102 54.9
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.4e-20 103.2 102 54.9
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.4e-20 103.2 102 54.9
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.9e-20 102.8 102 53.9
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 1.9e-20 102.8 101 52.5
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.4e-20 102.4 102 54.9
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 2.4e-20 102.4 98 56.1
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 3.2e-20 102.1 100 56.0
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 4.1e-20 101.7 98 53.1
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 7.0e-20 100.9 100 56.0
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 9.2e-20 100.5 105 50.5
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 9.2e-20 100.5 105 50.5
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 9.2e-20 100.5 100 54.0
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 1.2e-19 100.1 86 59.3
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 1.6e-19 99.8 101 50.5
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 1.6e-19 99.8 110 54.5
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 1.6e-19 99.8 101 55.4
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 2.0e-19 99.4 98 55.1
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.0e-19 99.4 102 53.9
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 2.0e-19 99.4 101 56.4
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 2.0e-19 99.4 101 55.4
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 2.7e-19 99.0 98 55.1
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 2.7e-19 99.0 98 55.1
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 2.7e-19 99.0 101 53.5
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.7e-19 99.0 99 56.6
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 3.5e-19 98.6 93 55.9
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 3.5e-19 98.6 100 55.0
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 3.5e-19 98.6 94 58.5
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 4.6e-19 98.2 110 54.5
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 4.6e-19 98.2 102 52.9
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 4.6e-19 98.2 98 59.2
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 6.0e-19 97.8 104 55.8
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 6.0e-19 97.8 94 58.5
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 7.8e-19 97.4 117 50.4
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 7.8e-19 97.4 93 53.8
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 1.0e-18 97.1 98 58.2
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 1.0e-18 97.1 103 55.3
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 1.0e-18 97.1 102 53.9
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.3e-18 96.7 98 53.1
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.3e-18 96.7 107 53.3
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 1.3e-18 96.7 83 56.6
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 1.3e-18 96.7 98 55.1
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 1.3e-18 96.7 100 52.0
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.7e-18 96.3 98 56.1
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 2.3e-18 95.9 112 44.6
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 3.0e-18 95.5 117 47.0
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 3.0e-18 95.5 99 53.5
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 3.9e-18 95.1 98 53.1
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 3.9e-18 95.1 110 50.9
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 3.9e-18 95.1 98 56.1
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 6.6e-18 94.4 99 51.5
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 6.6e-18 94.4 99 49.5
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 6.6e-18 94.4 98 53.1
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 8.6e-18 94.0 95 54.7
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 8.6e-18 94.0 99 51.5
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 8.6e-18 94.0 108 52.8
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 8.6e-18 94.0 106 52.8
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 8.6e-18 94.0 98 50.0
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 8.6e-18 94.0 83 61.4
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 8.6e-18 94.0 98 56.1
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 1.1e-17 93.6 98 50.0
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 1.1e-17 93.6 95 53.7
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 1.5e-17 93.2 92 51.1
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 1.5e-17 93.2 98 51.0
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 1.9e-17 92.8 99 54.5
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 1.9e-17 92.8 102 52.0
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.9e-17 92.8 110 49.1
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 2.5e-17 92.4 85 56.5
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 2.5e-17 92.4 103 53.4
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 2.5e-17 92.4 93 55.9
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 3.3e-17 92.0 103 51.5
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 3.3e-17 92.0 100 54.0
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 3.3e-17 92.0 79 62.0
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.3e-17 91.7 108 51.9
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.6e-17 91.3 110 48.2
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.6e-17 91.3 110 49.1
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 5.6e-17 91.3 93 55.9
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 5.6e-17 91.3 99 54.5
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.3e-17 90.9 108 50.0
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 7.3e-17 90.9 108 50.0
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 7.3e-17 90.9 105 49.5
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 9.5e-17 90.5 85 55.3
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 9.5e-17 90.5 105 46.7
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 9.5e-17 90.5 100 53.0
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 1.2e-16 90.1 85 55.3
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 1.2e-16 90.1 110 50.0
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 1.6e-16 89.7 95 53.7
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 2.8e-16 89.0 103 52.4
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 2.8e-16 89.0 103 51.5
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 3.6e-16 88.6 85 54.1
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 4.7e-16 88.2 101 53.5
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 6.2e-16 87.8 77 62.3
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 6.2e-16 87.8 101 49.5
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 6.2e-16 87.8 98 50.0
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 8.1e-16 87.4 110 48.2
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 8.1e-16 87.4 101 48.5
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 8.1e-16 87.4 101 49.5
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.1e-15 87.0 110 47.3
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 1.4e-15 86.7 98 50.0
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 3.1e-15 85.5 80 58.8
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 3.1e-15 85.5 85 57.6
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 2.9e-13 79.0 98 50.0
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 3.7e-13 78.6 67 56.7
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 8.3e-13 77.4 87 43.7
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 2.4e-12 75.9 111 44.1
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 2.4e-12 75.9 80 51.2
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 3.2e-12 75.5 66 51.5
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 4.1e-12 75.1 73 54.8
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 5.4e-12 74.7 66 57.6
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 5.4e-12 74.7 80 51.2
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 7.1e-12 74.3 85 47.1
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 7.1e-12 74.3 66 50.0
C03p23120 Brassica napus HOM05D003871 ORTHO05D032550 3.0e-10 68.9 63 55.6
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 6.6e-10 67.8 85 43.5
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-10 67.4 67 50.7
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 1.9e-09 66.2 76 46.1
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.3e-09 65.5 105 39.0
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 5.6e-09 64.7 75 45.3
BolC3t14713H Brassica oleracea HOM05D000059 ORTHO05D032550 3.4e-06 55.5 51 54.9
ATR0757G136 Amborella trichopoda HOM05D003871 ORTHO05D004621 9.9e-06 53.9 63 46.0
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 9.9e-06 53.9 59 40.7


User provided reference genes

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