Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1609.7 813 100.0
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.3e-282 973.8 908 62.9
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-265 920.2 908 59.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.6e-264 916.4 910 59.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.2e-259 900.2 908 59.1
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-259 899.8 897 60.0
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 4.9e-258 894.8 908 58.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 2.7e-256 889.0 909 57.6
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.3e-255 886.7 904 58.1
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.3e-255 885.9 909 57.4
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 2.8e-253 879.0 911 58.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 3.6e-253 878.6 908 57.4
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 3.6e-253 878.6 908 57.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.1e-252 875.5 908 56.9
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.7e-248 862.4 901 58.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 6.8e-244 847.8 926 55.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 2.9e-242 842.4 473 91.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.0e-207 727.6 908 49.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.7e-163 580.1 907 40.2
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 8.6e-162 575.1 907 40.5
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.9e-161 573.9 903 42.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.8e-160 570.1 898 41.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.0e-159 568.2 874 42.1
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 8.9e-159 565.1 913 39.8
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.2e-157 560.5 898 40.9
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.7e-157 559.7 898 40.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 5.0e-154 549.3 906 40.0
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.1e-153 548.1 898 40.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.0e-151 539.7 906 40.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 4.0e-151 539.7 914 39.8
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 8.9e-151 538.5 905 39.4
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-150 538.1 914 39.6
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-149 534.3 912 39.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.1e-148 531.6 746 44.5
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.4e-148 531.2 917 38.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.7e-147 526.9 917 38.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.7e-147 526.9 867 39.7
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.6e-147 526.2 894 39.1
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.9e-146 523.1 871 40.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.0e-146 522.7 902 39.4
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.9e-145 520.8 911 38.9
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.5e-145 520.4 911 39.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 3.3e-145 520.0 870 39.8
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.1e-144 517.3 899 38.0
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.1e-144 517.3 902 38.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.8e-144 516.9 904 37.7
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.3e-143 513.8 914 38.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.3e-143 513.8 899 37.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.0e-142 510.8 951 36.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-142 510.8 586 54.8
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.6e-142 510.4 900 38.3
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 5.8e-142 509.2 911 38.5
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.3e-141 508.1 960 36.8
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.4e-140 504.6 913 38.7
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 7.1e-140 502.3 909 39.2
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.1e-139 500.7 912 37.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 3.5e-139 500.0 943 38.3
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.0e-138 498.4 894 37.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.3e-138 497.3 893 38.2
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.3e-138 497.3 916 36.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.0e-138 496.9 910 38.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 6.6e-138 495.7 908 36.8
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.2e-136 491.5 894 36.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.1e-136 490.7 909 36.2
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 8.9e-135 485.3 883 37.4
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.5e-134 484.6 916 35.6
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.5e-134 484.6 916 36.0
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.4e-134 483.4 913 35.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.8e-134 482.6 758 41.4
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.9e-132 477.6 915 36.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 4.1e-132 476.5 859 38.0
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 7.1e-132 475.7 908 36.0
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.1e-130 469.5 923 36.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 8.9e-127 458.8 895 35.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.9e-126 455.3 889 34.6
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.1e-124 451.8 872 36.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 9.3e-124 448.7 903 35.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.6e-123 448.0 911 35.0
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 5.3e-119 433.0 979 34.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.8e-118 429.5 907 33.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 7.6e-118 429.1 922 33.4
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 9.9e-118 428.7 912 33.4
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-117 427.2 911 33.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 6.0e-115 419.5 877 35.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.0e-114 418.7 913 32.9
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.0e-114 418.7 900 34.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 4.3e-113 413.3 700 38.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 7.3e-113 412.5 702 38.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 9.6e-113 412.1 917 32.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.6e-110 404.1 892 32.8
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.8e-109 400.2 810 34.0
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.9e-108 397.9 919 33.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 5.4e-108 396.4 871 35.2
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.1e-107 394.4 935 31.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.7e-107 394.0 908 32.7
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.0e-106 392.1 749 36.3
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.9e-106 390.2 962 31.7
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 7.4e-105 386.0 643 41.1
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.1e-104 384.4 906 32.9
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 4.2e-100 370.2 752 34.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.5e-100 369.8 797 32.5
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 3.7e-96 357.1 666 36.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.0e-90 337.4 695 34.0
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-89 335.1 241 74.7
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.1e-87 327.4 703 34.6
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 8.5e-85 319.3 856 29.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-83 315.5 559 39.5
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 9.7e-81 305.8 693 34.1
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.6e-73 281.2 658 31.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 4.4e-73 280.4 900 28.1
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.6e-67 261.9 238 58.8
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.6e-67 261.9 775 30.6
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 8.0e-67 259.6 260 54.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-66 257.7 557 33.9
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.3e-65 254.2 420 42.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.1e-63 246.1 251 54.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.1e-60 239.2 701 30.4
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 5.5e-60 236.9 658 29.8
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.7e-57 226.9 846 26.1
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.1e-55 222.6 713 26.9
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.9e-54 216.9 194 59.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 5.5e-52 210.3 195 54.9
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.6e-51 208.8 193 59.1
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.4e-49 200.7 737 27.5
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 3.7e-48 197.6 220 47.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 8.0e-43 179.9 978 23.3
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.0e-43 179.9 711 26.4
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.0e-43 179.9 711 26.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 5.7e-41 173.7 395 35.7
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.4e-39 167.2 193 44.6
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 7.0e-39 166.8 745 25.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.2e-39 166.4 367 31.3
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 4.0e-34 151.0 137 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 3.7e-32 144.4 256 37.9
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.7e-32 144.4 164 48.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.5e-30 137.9 731 23.8
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.1e-27 128.6 270 32.6
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 4.0e-26 124.4 146 47.9
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 8.9e-26 123.2 243 34.2
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-25 122.9 109 56.9
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.3e-21 109.4 237 32.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.3e-21 109.4 616 24.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 3.0e-21 108.2 180 33.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 6.6e-21 107.1 84 70.2
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 3.3e-20 104.8 265 29.8
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.1e-18 98.2 233 30.5
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.0e-18 97.8 84 61.9
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.4e-16 90.1 241 30.3
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.1e-15 87.8 99 44.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-14 86.3 218 34.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.6e-14 85.9 100 43.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.6e-14 84.3 100 43.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.0e-13 83.2 184 29.3
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 3.6e-11 74.7 127 32.3
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.7e-11 74.3 107 41.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.1e-10 71.6 109 41.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.0e-10 71.2 145 31.7
BcaC07g36816 Brassica carinata HOM05D004248 ORTHO05D004978 7.6e-09 67.0 49 69.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.4e-07 60.8 107 41.1
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.2e-06 59.7 50 52.0
BcaB02g11441 Brassica carinata HOM05D004248 ORTHO05D094849 1.6e-06 59.3 34 76.5


User provided reference genes

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