Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 6.9e-51 203.8 108 100.0
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.5e-21 106.3 65 86.2
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.5e-21 106.3 65 86.2
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.5e-21 106.3 65 86.2
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.5e-21 106.3 65 86.2
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 5.7e-21 104.4 74 77.0
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.7e-20 102.8 65 81.5
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.7e-20 102.8 65 83.1
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.2e-20 102.4 65 81.5
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 3.7e-20 101.7 65 83.1
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 3.7e-20 101.7 65 83.1
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 4.8e-20 101.3 65 80.0
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 8.2e-20 100.5 65 80.0
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 8.2e-20 100.5 65 80.0
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 3.4e-18 95.1 65 73.8
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 5.9e-18 94.4 79 62.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.7e-17 92.8 65 73.8
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.4e-16 89.7 65 72.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.4e-16 89.7 65 72.3
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.9e-16 89.4 65 70.8
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.5e-16 89.0 63 73.0
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 3.2e-16 88.6 65 64.6
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 3.2e-16 88.6 65 64.6
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 5.5e-16 87.8 65 69.2
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 7.2e-16 87.4 63 73.0
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 7.2e-16 87.4 65 67.7
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.2e-15 86.7 65 70.8
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.2e-15 86.7 65 70.8
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.6e-15 86.3 65 69.2
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 2.1e-15 85.9 65 67.7
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.1e-15 85.9 65 67.7
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 2.1e-15 85.9 65 69.2
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 2.1e-15 85.9 65 69.2
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 2.7e-15 85.5 65 66.2
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 3.6e-15 85.1 65 69.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.6e-15 85.1 65 69.2
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 4.7e-15 84.7 65 66.2
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 4.7e-15 84.7 63 71.4
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 4.7e-15 84.7 63 71.4
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.7e-15 84.7 65 66.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 4.7e-15 84.7 65 66.2
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 4.7e-15 84.7 65 67.7
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 6.1e-15 84.3 65 66.2
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 8.0e-15 84.0 65 64.6
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 8.0e-15 84.0 79 58.2
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 8.0e-15 84.0 65 67.7
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.0e-14 83.6 65 69.2
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.0e-14 83.6 65 64.6
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.0e-14 83.6 65 64.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.0e-14 83.6 63 71.4
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.4e-14 83.2 65 67.7
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.8e-14 82.8 65 66.2
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.8e-14 82.8 65 67.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.8e-14 82.8 65 66.2
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.8e-14 82.8 65 67.7
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.3e-14 82.4 65 64.6
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 2.3e-14 82.4 65 66.2
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.3e-14 82.4 65 64.6
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 3.0e-14 82.0 65 67.7
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.0e-14 82.0 63 68.3
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 3.0e-14 82.0 65 66.2
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.0e-14 82.0 65 66.2
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 3.9e-14 81.6 65 66.2
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 5.2e-14 81.3 65 66.2
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.2e-14 81.3 73 63.0
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 64.6
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 6.7e-14 80.9 63 66.7
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 60.0
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 64.6
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 64.6
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 64.6
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 64.6
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 6.7e-14 80.9 65 64.6
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 8.8e-14 80.5 65 64.6
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.1e-13 80.1 65 66.2
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.1e-13 80.1 65 66.2
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 2.0e-13 79.3 65 63.1
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 2.0e-13 79.3 65 61.5
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.0e-13 79.3 65 63.1
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 2.0e-13 79.3 65 60.0
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 2.6e-13 79.0 65 60.0
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 3.3e-13 78.6 65 58.5
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 3.3e-13 78.6 65 63.1
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 3.3e-13 78.6 65 63.1
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 4.4e-13 78.2 65 61.5
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.4e-13 78.2 65 61.5
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 4.4e-13 78.2 55 67.3
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 5.7e-13 77.8 65 66.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 9.7e-13 77.0 48 79.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 9.7e-13 77.0 64 60.9
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 9.7e-13 77.0 65 63.1
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-12 76.6 73 61.6
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.3e-12 76.6 65 60.0
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.7e-12 76.3 73 58.9
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 2.8e-12 75.5 57 70.2
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.8e-12 75.5 65 58.5
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.8e-12 75.5 65 60.0
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 3.7e-12 75.1 61 63.9
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 3.7e-12 75.1 65 61.5
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 4.8e-12 74.7 63 61.9
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 4.8e-12 74.7 65 61.5
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 8.2e-12 73.9 65 56.9
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.1e-11 73.6 55 70.9
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.1e-11 73.6 55 70.9
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 1.1e-11 73.6 63 58.7
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.1e-11 73.6 63 55.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.1e-11 73.6 65 56.9
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.4e-11 73.2 79 53.2
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.8e-11 72.8 55 67.3
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.8e-11 72.8 57 70.2
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.8e-11 72.8 57 70.2
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.4e-11 72.4 65 56.9
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 3.1e-11 72.0 73 54.8
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 9.1e-11 70.5 65 53.8
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 9.1e-11 70.5 65 53.8
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.2e-10 70.1 63 52.4
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 2.6e-10 68.9 65 52.3
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 2.6e-10 68.9 65 52.3
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.5e-10 68.2 63 55.6
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 5.9e-10 67.8 65 52.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 5.9e-10 67.8 65 52.3
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.0e-09 67.0 63 54.0
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 6.5e-09 64.3 101 38.6
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 8.5e-09 63.9 46 69.6
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 7.2e-08 60.8 45 68.9
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 1.6e-07 59.7 38 76.3
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.7e-07 58.9 45 66.7
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 8.0e-07 57.4 45 64.4
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 8.0e-07 57.4 65 49.2


User provided reference genes

Program Settings