Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 6.9e-147 523.9 247 100.0
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 5.1e-33 145.6 85 76.5
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.5e-32 143.3 82 78.0
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 2.5e-32 143.3 82 78.0
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 2.5e-32 143.3 82 78.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 2.8e-31 139.8 79 78.5
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.8e-31 139.8 82 75.6
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 2.4e-30 136.7 82 75.6
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 9.0e-30 134.8 79 74.7
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 1.2e-29 134.4 79 74.7
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 4.5e-29 132.5 79 73.4
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 1.3e-28 131.0 79 72.2
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 1.3e-28 131.0 79 72.2
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 8.4e-28 128.3 79 72.2
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.2e-27 126.3 103 61.2
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 6.2e-23 112.1 77 68.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 6.9e-22 108.6 92 57.6
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 1.2e-21 107.8 147 42.9
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.5e-21 107.5 93 54.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 2.6e-21 106.7 94 55.3
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 2.6e-21 106.7 82 61.0
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.6e-21 106.7 78 61.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 3.4e-21 106.3 79 62.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 3.4e-21 106.3 73 65.8
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 4.5e-21 105.9 92 56.5
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 5.8e-21 105.5 93 53.8
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 5.8e-21 105.5 73 67.1
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 7.6e-21 105.1 102 53.9
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 1.3e-20 104.4 78 60.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 1.3e-20 104.4 78 62.8
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 1.3e-20 104.4 82 62.2
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.2e-20 103.6 74 63.5
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 2.9e-20 103.2 82 58.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 2.9e-20 103.2 77 61.0
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 3.8e-20 102.8 77 59.7
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 3.8e-20 102.8 153 39.9
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 8.4e-20 101.7 73 61.6
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 8.4e-20 101.7 73 63.0
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 8.4e-20 101.7 77 59.7
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.4e-20 101.7 99 51.5
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.1e-19 101.3 75 61.3
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.1e-19 101.3 91 57.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.4e-19 100.9 73 64.4
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.4e-19 100.9 79 58.2
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 1.4e-19 100.9 79 58.2
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 1.4e-19 100.9 82 57.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 3.2e-19 99.8 147 38.8
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 4.2e-19 99.4 78 59.0
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 4.2e-19 99.4 93 53.8
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 4.2e-19 99.4 148 38.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 4.2e-19 99.4 148 38.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 5.5e-19 99.0 77 55.8
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 5.5e-19 99.0 148 37.8
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 5.5e-19 99.0 153 38.6
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 7.1e-19 98.6 144 41.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 9.3e-19 98.2 82 56.1
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 9.3e-19 98.2 148 37.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.2e-18 97.8 75 60.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 1.6e-18 97.4 92 55.4
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.6e-18 97.4 98 50.0
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 1.6e-18 97.4 98 50.0
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 2.1e-18 97.1 102 49.0
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 2.1e-18 97.1 79 58.2
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.7e-18 96.7 77 57.1
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 4.6e-18 95.9 84 56.0
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.0e-18 95.5 147 37.4
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.9e-18 95.1 74 60.8
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 7.9e-18 95.1 73 63.0
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 1.0e-17 94.7 93 52.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 1.3e-17 94.4 78 56.4
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.3e-17 94.4 147 40.1
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 1.8e-17 94.0 77 55.8
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 2.3e-17 93.6 151 38.4
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.3e-17 93.6 73 58.9
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 3.9e-17 92.8 73 56.2
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 6.7e-17 92.0 94 51.1
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 6.7e-17 92.0 73 60.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 8.7e-17 91.7 73 60.3
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.1e-16 91.3 73 57.5
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 2.5e-16 90.1 75 54.7
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 2.5e-16 90.1 75 54.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.5e-16 90.1 100 45.0
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 4.3e-16 89.4 100 45.0
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 4.3e-16 89.4 74 60.8
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 5.7e-16 89.0 73 56.2
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 1.3e-15 87.8 100 44.0
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 2.1e-15 87.0 100 42.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 2.8e-15 86.7 190 36.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.7e-15 86.3 73 58.9
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 3.7e-15 86.3 92 46.7
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 4.8e-15 85.9 93 51.6
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 4.8e-15 85.9 99 46.5
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.1e-14 84.7 100 42.0
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.4e-14 84.3 100 41.0
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 1.8e-14 84.0 100 41.0
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.8e-14 84.0 94 43.6
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 2.4e-14 83.6 94 42.6
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 1.2e-13 81.3 94 46.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.0e-13 80.5 80 50.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.0e-13 80.5 77 53.2
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 3.4e-13 79.7 90 44.4
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.0e-12 78.2 148 33.1
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.3e-12 77.8 142 35.2
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 2.2e-12 77.0 74 52.7
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.3e-11 71.6 60 56.7
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 6.3e-07 58.9 209 29.7


User provided reference genes

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