Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11072 Brassica carinata HOM05D000135 ORTHO05D011359 4.8e-46 188.0 132 100.0
BraA05t20974Z Brassica rapa HOM05D000135 ORTHO05D011359 1.9e-39 166.0 134 91.0
Sp1g33430 Schrenkiella parvula HOM05D000135 ORTHO05D011359 1.1e-34 150.2 132 73.5
A05p20660 Brassica napus HOM05D000135 ORTHO05D011359 2.1e-33 146.0 132 82.6
Thhalv10012139m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 1.5e-31 139.8 110 78.2
BcaC05g27517 Brassica carinata HOM05D000135 ORTHO05D011359 1.4e-29 133.3 133 82.7
BcaB07g33677 Brassica carinata HOM05D000135 ORTHO05D011359 3.1e-29 132.1 131 62.6
BcaC08g43136 Brassica carinata HOM05D000135 ORTHO05D011359 1.2e-28 130.2 131 73.3
C06p04130 Brassica napus HOM05D000135 ORTHO05D011359 1.2e-28 130.2 131 73.3
A06p03870 Brassica napus HOM05D000135 ORTHO05D011359 1.5e-28 129.8 131 52.7
BraA06t23595Z Brassica rapa HOM05D000135 ORTHO05D011359 1.5e-28 129.8 131 52.7
BolC6t35541H Brassica oleracea HOM05D000135 ORTHO05D011359 5.9e-28 127.9 131 73.3
Thhalv10022182m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 1.4e-26 123.2 132 59.1
Carub.0003s0255 Capsella rubella HOM05D000135 ORTHO05D011359 2.7e-25 119.0 108 53.7
AL3G13080 Arabidopsis lyrata HOM05D000227 ORTHO05D011359 6.1e-25 117.9 110 51.8
AT3G03410 Arabidopsis thaliana HOM05D000135 ORTHO05D011359 2.2e-22 109.4 110 50.9
BolC5t32216H Brassica oleracea HOM05D000135 ORTHO05D011359 2.8e-22 109.0 67 88.1
C05p34910 Brassica napus HOM05D000135 ORTHO05D011359 1.8e-21 106.3 67 86.6
Sp3g02410 Schrenkiella parvula HOM05D000227 ORTHO05D011359 1.7e-19 99.8 110 55.5
Sp3g02400 Schrenkiella parvula HOM05D000135 ORTHO05D000203 7.4e-15 84.3 119 37.8
AL6G28550 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 2.2e-14 82.8 119 48.7
CARHR195730 Cardamine hirsuta HOM05D000135 ORTHO05D000203 2.2e-14 82.8 119 41.2
AL3G13072 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 2.8e-14 82.4 119 38.7
BcaC05g30534 Brassica carinata HOM05D000135 ORTHO05D011359 2.8e-14 82.4 111 38.7
Carub.0004s1794 Capsella rubella HOM05D000135 ORTHO05D000203 4.8e-14 81.6 118 38.1
AT5G17470 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 1.8e-13 79.7 119 42.0
Thhalv10022417m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 1.8e-13 79.7 119 37.8
C05p63420 Brassica napus HOM05D000227 ORTHO05D011359 2.4e-13 79.3 111 47.7
BcaC05g30277 Brassica carinata HOM05D000135 ORTHO05D011359 3.1e-13 79.0 111 37.8
AT3G03400 Arabidopsis thaliana HOM05D000135 ORTHO05D011359 4.1e-13 78.6 119 36.1
CARHR077420 Cardamine hirsuta HOM05D000135 ORTHO05D000203 4.1e-13 78.6 119 36.1
AL4G32280 Arabidopsis lyrata HOM05D000135 ORTHO05D011359 1.2e-12 77.0 119 47.1
BcaC05g30276 Brassica carinata HOM05D000135 ORTHO05D011359 3.5e-12 75.5 111 48.6
C06p04190 Brassica napus HOM05D000135 ORTHO05D011359 3.5e-12 75.5 51 70.6
CARHR077430 Cardamine hirsuta HOM05D000135 ORTHO05D011359 1.3e-11 73.6 102 49.0
SGA_v2.0_scaffold5G02968 Striga asiatica HOM05D000135 ORTHO05D000203 1.7e-11 73.2 119 33.6
AT2G36180 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 5.0e-11 71.6 117 35.9
Carub.0006s1570 Capsella rubella HOM05D000135 ORTHO05D011359 5.0e-11 71.6 119 42.9
CARHR058370 Cardamine hirsuta HOM05D000135 ORTHO05D000203 1.5e-10 70.1 120 32.5
A03p01440 Brassica napus HOM05D000135 ORTHO05D000203 1.9e-10 69.7 116 35.3
Carub.0004s0480 Capsella rubella HOM05D000135 ORTHO05D000203 2.5e-10 69.3 119 34.5
AL7G46640 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 3.2e-10 68.9 114 32.5
BcaB01g05778 Brassica carinata HOM05D000135 ORTHO05D000203 3.2e-10 68.9 117 35.0
C03p01770 Brassica napus HOM05D000135 ORTHO05D000203 3.2e-10 68.9 117 35.0
BolC3t12732H Brassica oleracea HOM05D000135 ORTHO05D000203 3.2e-10 68.9 117 35.0
BcaB03g15271 Brassica carinata HOM05D000135 ORTHO05D000203 7.2e-10 67.8 107 33.6
TWI77G0496 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 7.2e-10 67.8 117 37.6
BraA03t09523Z Brassica rapa HOM05D000135 ORTHO05D000203 9.4e-10 67.4 118 33.9
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 1.2e-09 67.0 117 30.8
BcaB01g05781 Brassica carinata HOM05D000135 ORTHO05D000203 2.7e-09 65.9 114 35.1
Carub.0007s3293 Capsella rubella HOM05D000135 ORTHO05D000203 2.7e-09 65.9 120 30.0
ECA232G2608 Erigeron canadensis HOM05D000135 ORTHO05D000203 4.7e-09 65.1 119 34.5
DCAR_010200 Daucus carota HOM05D000135 ORTHO05D000203 6.1e-09 64.7 114 32.5
BcaC09g47744 Brassica carinata HOM05D000135 ORTHO05D011359 8.0e-09 64.3 65 44.6
BNapus_Darmor_BZH_scaffold_162p00140 Brassica napus HOM05D000135 ORTHO05D011359 8.0e-09 64.3 65 44.6
BolC1t05833H Brassica oleracea HOM05D000135 ORTHO05D011359 8.0e-09 64.3 65 44.6
Hma1.2p1_0283F.1_g113440 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 8.0e-09 64.3 114 33.3
THA.LOC104822372 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 8.0e-09 64.3 123 29.3
BraA03t12154Z Brassica rapa HOM05D017453 ORTHO05D018582 1.0e-08 63.9 55 49.1
Lsat_1_v5_gn_4_156941 Lactuca sativa HOM05D000135 ORTHO05D000203 1.0e-08 63.9 119 31.9
Phvul.003G019600 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.0e-08 63.9 111 33.3
Lj2g0017494 Lotus japonicus HOM05D000135 ORTHO05D000203 1.4e-08 63.5 113 31.0
CSS0018159 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.3e-08 62.8 122 32.8
AT5G37770 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 5.2e-08 61.6 109 32.1
Lalb_Chr10g0095751 Lupinus albus HOM05D000135 ORTHO05D000203 5.2e-08 61.6 113 32.7
VMungo1215G3169 Vigna mungo HOM05D000135 ORTHO05D000203 5.2e-08 61.6 111 31.5
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 6.7e-08 61.2 111 32.4
Oeu046172.1 Olea europaea HOM05D000135 ORTHO05D000203 8.8e-08 60.8 116 32.8
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 1.2e-07 60.5 112 32.1
Aa31LG9G17390 Aethionema arabicum HOM05D000135 ORTHO05D000203 1.5e-07 60.1 128 28.1
Nitab4.5_0000922g0050 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.5e-07 60.1 113 33.6
Nitab4.5_0024537g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.5e-07 60.1 113 32.7
Hma1.2p1_0669F.1_g200160 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 2.0e-07 59.7 119 31.9
PGSC0003DMG400010410 Solanum tuberosum HOM05D000135 ORTHO05D000203 2.0e-07 59.7 113 30.1
Phvul.002G320800 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 2.6e-07 59.3 113 31.9
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 2.6e-07 59.3 112 33.0
CAN.G1067.4 Capsicum annuum HOM05D000135 ORTHO05D000203 3.3e-07 58.9 114 28.9
Lj9P420T29 Lonicera japonica HOM05D000135 ORTHO05D000203 3.3e-07 58.9 114 31.6
vmacro22375 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 3.3e-07 58.9 119 30.3
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 4.4e-07 58.5 112 39.3
Peaxi162Scf00207g00006 Petunia axillaris HOM05D000135 ORTHO05D000203 4.4e-07 58.5 113 34.5
TWI74G1313 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 4.4e-07 58.5 118 33.9
VMungo0251G1448 Vigna mungo HOM05D000135 ORTHO05D000203 4.4e-07 58.5 113 31.9
CDE11G0709 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 5.7e-07 58.2 113 31.0
TWI53G1610 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 5.7e-07 58.2 111 31.5
vmacro23116 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 5.7e-07 58.2 113 30.1
Aa31LG7G9410 Aethionema arabicum HOM05D000135 ORTHO05D000203 7.5e-07 57.8 113 30.1
Thhalv10019556m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 7.5e-07 57.8 107 36.4
Sp7g04260 Schrenkiella parvula HOM05D000135 ORTHO05D000203 7.5e-07 57.8 113 29.2
Sopen01g001390 Solanum pennellii HOM05D000135 ORTHO05D000203 7.5e-07 57.8 136 27.9
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 7.5e-07 57.8 112 45.5
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 9.7e-07 57.4 114 36.8
BcaC02g08883 Brassica carinata HOM05D000135 ORTHO05D000203 1.3e-06 57.0 116 34.5
C04p49500 Brassica napus HOM05D000135 ORTHO05D000203 1.3e-06 57.0 116 34.5
BolC4t26538H Brassica oleracea HOM05D000135 ORTHO05D000203 1.3e-06 57.0 116 34.5
AUR62023178 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.3e-06 57.0 113 31.0
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 1.3e-06 57.0 112 31.2
THA.LOC104805610 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 1.3e-06 57.0 126 28.6
MSTRG.4573 Avicennia marina HOM05D000135 ORTHO05D000203 1.7e-06 56.6 118 28.8
CSS0029226 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.7e-06 56.6 113 28.3
ECA233G3872 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.7e-06 56.6 113 30.1
HanXRQChr01g0013261 Helianthus annuus HOM05D000135 ORTHO05D000203 1.7e-06 56.6 116 30.2
Lalb_Chr04g0255621 Lupinus albus HOM05D000135 ORTHO05D000203 1.7e-06 56.6 113 30.1
Medtr8g105230 Medicago truncatula HOM05D000135 ORTHO05D000203 1.7e-06 56.6 113 29.2
Solyc01g005370.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.7e-06 56.6 136 27.2
BcaB06g27704 Brassica carinata HOM05D000135 ORTHO05D000203 2.2e-06 56.2 116 34.5
AUR62019110 Chenopodium quinoa HOM05D000135 ORTHO05D000203 2.2e-06 56.2 116 29.3
MD16G1019200 Malus domestica HOM05D000135 ORTHO05D000203 2.2e-06 56.2 112 30.4
Psat6g046160 Pisum sativum HOM05D000135 ORTHO05D000203 2.2e-06 56.2 113 28.3
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 2.2e-06 56.2 112 44.6
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 2.8e-06 55.8 112 36.6
BcaC08g46057 Brassica carinata HOM05D000135 ORTHO05D000203 2.8e-06 55.8 111 37.8
C06p39780 Brassica napus HOM05D000135 ORTHO05D000203 2.8e-06 55.8 111 37.8
BolC5t30348H Brassica oleracea HOM05D000135 ORTHO05D000203 2.8e-06 55.8 109 28.4
BolC6t39065H Brassica oleracea HOM05D000135 ORTHO05D000203 2.8e-06 55.8 111 39.6
THA.LOC104807856 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 2.8e-06 55.8 113 39.8
AL1G40290 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 3.7e-06 55.5 111 29.7
AT1G24620 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 3.7e-06 55.5 111 29.7
EL10Ac1g00489 Beta vulgaris HOM05D000135 ORTHO05D000203 3.7e-06 55.5 116 28.4
A07p33360 Brassica napus HOM05D000135 ORTHO05D000203 3.7e-06 55.5 111 36.9
BraA07t29017Z Brassica rapa HOM05D000135 ORTHO05D000203 3.7e-06 55.5 111 29.7
BraA07t30964Z Brassica rapa HOM05D000135 ORTHO05D000203 3.7e-06 55.5 111 36.9
MELO3C005272.2 Cucumis melo HOM05D000135 ORTHO05D000203 3.7e-06 55.5 113 30.1
CsaV3_5G028160 Cucumis sativus L. HOM05D000135 ORTHO05D000203 3.7e-06 55.5 113 30.1
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 3.7e-06 55.5 62 40.3
MD13G1020800 Malus domestica HOM05D000135 ORTHO05D000203 3.7e-06 55.5 112 29.5
Nitab4.5_0011970g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.7e-06 55.5 113 33.6
Oeu031775.1 Olea europaea HOM05D000135 ORTHO05D000203 3.7e-06 55.5 120 28.3
BcaB03g14015 Brassica carinata HOM05D000135 ORTHO05D000203 4.8e-06 55.1 111 29.7
BcaC06g35247 Brassica carinata HOM05D000135 ORTHO05D000203 4.8e-06 55.1 111 29.7
A07p12360 Brassica napus HOM05D000135 ORTHO05D000203 4.8e-06 55.1 111 29.7
C07p18260 Brassica napus HOM05D000135 ORTHO05D000203 4.8e-06 55.1 111 29.7
BolC7t42336H Brassica oleracea HOM05D000135 ORTHO05D000203 4.8e-06 55.1 111 29.7
Carub.0001s2547 Capsella rubella HOM05D000135 ORTHO05D000203 4.8e-06 55.1 111 29.7
Ca_17261_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 4.8e-06 55.1 113 29.2
Ca_17282_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 4.8e-06 55.1 113 29.2
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 4.8e-06 55.1 112 40.2
Nitab4.5_0009467g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.8e-06 55.1 113 33.6
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 4.8e-06 55.1 61 41.0
Psat7g008120 Pisum sativum HOM05D000135 ORTHO05D000203 4.8e-06 55.1 113 29.2
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 4.8e-06 55.1 112 41.1
Sed0001375 Sechium edule HOM05D000135 ORTHO05D000203 4.8e-06 55.1 114 28.9
Thecc.05G284800 Theobroma cacao HOM05D000227 ORTHO05D000451 4.8e-06 55.1 116 27.6
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 6.3e-06 54.7 113 30.1
BcaC07g38900 Brassica carinata HOM05D000135 ORTHO05D000203 6.3e-06 54.7 109 33.0
C08p18480 Brassica napus HOM05D000135 ORTHO05D000203 6.3e-06 54.7 109 33.0
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 6.3e-06 54.7 114 42.1
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 6.3e-06 54.7 112 42.9
PGR004G1071 Punica granatum HOM05D000227 ORTHO05D000451 6.3e-06 54.7 116 26.7
Sopen03g037760 Solanum pennellii HOM05D000135 ORTHO05D000203 6.3e-06 54.7 117 29.9
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 6.3e-06 54.7 68 39.7
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 8.2e-06 54.3 57 43.9
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 8.2e-06 54.3 112 40.2
HanXRQChr09g0262211 Helianthus annuus HOM05D000135 ORTHO05D000203 8.2e-06 54.3 118 26.3
Nn3g18256 Nelumbo nucifera HOM05D000135 ORTHO05D000203 8.2e-06 54.3 119 27.7
Rhsim09G0089800 Rhododendron simsii HOM05D000135 ORTHO05D000203 8.2e-06 54.3 113 28.3
Sed0014744 Sechium edule HOM05D000135 ORTHO05D000203 8.2e-06 54.3 113 31.0
Solyc03g118810.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 8.2e-06 54.3 117 29.1


User provided reference genes

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