Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 0.0e+00 1237.2 635 100.0
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 0.0e+00 1126.7 640 91.1
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 0.0e+00 1120.9 640 90.5
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 0.0e+00 1117.1 640 89.4
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 0.0e+00 1114.8 640 90.2
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 0.0e+00 1112.4 640 88.3
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 8.7e-271 936.8 649 76.1
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.8e-250 868.2 637 69.4
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 5.6e-217 758.1 634 64.5
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 4.4e-214 748.4 599 63.9
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 2.7e-211 739.2 635 61.6
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 7.3e-209 731.1 642 61.1
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 1.2e-206 723.8 636 59.9
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.3e-205 720.3 648 59.1
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 5.6e-169 598.6 553 61.5
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 2.2e-141 506.9 334 78.1
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 3.8e-141 506.1 615 48.8
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 5.0e-141 505.8 577 54.4
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 1.5e-137 494.2 481 56.8
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 1.8e-119 434.1 331 70.1
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 3.6e-99 366.7 569 39.7
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 2.7e-86 323.9 182 86.8
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 3.0e-85 320.5 579 37.5
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 3.9e-85 320.1 570 36.3
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 1.9e-84 317.8 641 34.0
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 1.2e-83 315.1 602 36.2
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.1e-82 312.0 584 37.5
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 1.8e-82 311.2 571 35.2
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 2.4e-82 310.8 585 35.4
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 5.2e-82 309.7 654 33.9
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 5.8e-81 306.2 655 34.2
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 7.6e-81 305.8 567 37.6
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.1e-79 302.0 578 36.5
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.1e-79 302.0 574 35.4
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 1.4e-79 301.6 630 35.7
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 3.2e-79 300.4 580 36.4
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 3.2e-79 300.4 580 35.3
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 5.4e-79 299.7 579 36.3
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 5.4e-79 299.7 567 37.4
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 2.7e-78 297.4 575 35.0
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 4.6e-78 296.6 587 37.1
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 7.8e-78 295.8 573 36.0
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 6.6e-77 292.7 638 33.5
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 3.3e-76 290.4 614 34.7
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 4.3e-76 290.0 612 35.1
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 5.6e-76 289.7 640 33.8
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 9.6e-76 288.9 646 32.7
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.8e-74 284.6 578 33.6
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.4e-74 284.3 608 33.4
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 4.0e-74 283.5 641 34.2
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 9.0e-74 282.3 605 34.7
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 2.9e-72 277.3 590 35.6
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 4.9e-72 276.6 620 33.4
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 6.4e-72 276.2 589 35.7
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 1.1e-71 275.4 635 32.4
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.7e-70 270.8 576 34.2
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 2.3e-69 267.7 584 34.9
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 8.7e-69 265.8 569 33.2
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 1.1e-68 265.4 686 31.8
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.5e-68 265.0 576 33.3
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 9.6e-68 262.3 581 33.9
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 9.6e-68 262.3 589 31.2
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.3e-67 261.9 610 32.1
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.6e-67 261.5 587 31.9
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.1e-67 261.2 597 31.3
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 2.1e-67 261.2 580 33.6
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.1e-66 258.8 584 33.7
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.8e-66 258.1 585 33.7
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 4.0e-66 256.9 630 30.0
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 5.8e-65 253.1 589 31.1
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 7.6e-65 252.7 586 31.7
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 6.4e-64 249.6 575 32.5
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.4e-63 247.7 556 33.1
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 4.2e-63 246.9 599 31.6
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 5.4e-63 246.5 693 31.0
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 9.3e-63 245.7 590 33.7
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 2.1e-62 244.6 591 31.3
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 2.1e-62 244.6 643 30.2
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 4.6e-62 243.4 591 31.3
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 1.3e-61 241.9 580 32.6
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 2.3e-61 241.1 593 32.4
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.5e-60 237.7 543 31.3
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 7.4e-60 236.1 580 31.4
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.3e-59 235.3 500 32.6
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 1.3e-59 235.3 575 30.6
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 8.1e-59 232.6 584 32.4
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 6.9e-58 229.6 590 30.5
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 9.0e-58 229.2 577 31.2
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 5.8e-57 226.5 597 31.2
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 3.8e-56 223.8 679 28.6
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 5.5e-55 219.9 582 30.2
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 1.1e-50 205.7 272 44.9
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 3.1e-50 204.1 509 31.0
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 4.0e-50 203.8 509 27.7
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.5e-47 194.5 278 41.4
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 7.9e-46 189.5 494 29.8
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 1.0e-45 189.1 597 27.6
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.3e-45 188.7 606 30.9
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 3.9e-45 187.2 583 29.3
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 1.9e-44 184.9 554 27.6
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 4.8e-43 180.3 426 32.2
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 1.8e-42 178.3 552 27.5
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 5.3e-42 176.8 236 41.9
BcaB07g33349 Brassica carinata HOM05D004843 ORTHO05D005833 6.9e-42 176.4 160 60.6
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 2.0e-41 174.9 107 86.9
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 2.0e-41 174.9 441 32.2
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 3.4e-41 174.1 587 28.6
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 4.5e-41 173.7 410 32.0
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 6.5e-40 169.9 108 86.1
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.2e-38 165.6 460 30.0
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.4e-37 162.2 268 37.3
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 3.3e-36 157.5 212 40.1
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.3e-36 157.5 253 39.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 3.3e-36 157.5 430 28.8
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 9.7e-36 156.0 550 26.4
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 2.2e-35 154.8 558 25.6
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 5.9e-33 146.7 437 27.2
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 1.7e-32 145.2 290 34.8
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 6.5e-32 143.3 287 33.1
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 8.5e-32 142.9 370 30.8
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.0e-29 136.0 404 30.0
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 5.1e-29 133.7 381 28.6
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 9.1e-26 122.9 554 25.1
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 3.8e-24 117.5 176 37.5
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 4.2e-23 114.0 181 35.4
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 1.2e-22 112.5 582 25.4
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.0e-21 109.4 154 38.3
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 2.3e-21 108.2 187 37.4
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 1.1e-20 105.9 141 44.7
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 5.3e-18 97.1 402 27.4
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 1.0e-16 92.8 297 26.3
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 5.5e-15 87.0 215 29.8
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 9.4e-15 86.3 144 38.9
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-12 77.4 106 40.6
C06p08980 Brassica napus HOM05D004843 ORTHO05D005833 5.7e-12 77.0 103 42.7
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 2.8e-11 74.7 131 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 6.3e-11 73.6 453 21.4
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 5.3e-10 70.5 259 25.5
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 3.8e-08 64.3 358 22.1
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 6.1e-06 57.0 99 34.3


User provided reference genes

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