Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10931 Brassica carinata HOM05D002373 ORTHO05D005805 5.5e-245 850.5 427 100.0
BolC6t36627H Brassica oleracea HOM05D002373 ORTHO05D005805 3.5e-223 778.1 416 95.4
C06p14470 Brassica napus HOM05D002373 ORTHO05D005805 6.6e-222 773.9 416 94.7
BraA05t20752Z Brassica rapa HOM05D002373 ORTHO05D005805 1.5e-218 762.7 416 93.8
A05p18610 Brassica napus HOM05D002373 ORTHO05D005805 6.4e-217 757.3 416 93.3
BcaC08g44046 Brassica carinata HOM05D002373 ORTHO05D005805 2.1e-204 715.7 416 89.4
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 1.3e-196 689.9 416 87.0
A01p26800 Brassica napus HOM05D002373 ORTHO05D005805 5.4e-192 674.5 417 86.3
Sp1g39690 Schrenkiella parvula HOM05D002373 ORTHO05D005805 1.3e-188 663.3 416 83.2
Thhalv10011245m.g Eutrema salsugineum HOM05D002373 ORTHO05D005805 4.3e-181 638.3 417 81.8
AL1G61500 Arabidopsis lyrata HOM05D002373 ORTHO05D005805 2.4e-179 632.5 415 81.0
AT1G53140 Arabidopsis thaliana HOM05D002373 ORTHO05D005805 1.4e-176 623.2 415 80.0
Carub.0001s4230 Capsella rubella HOM05D002373 ORTHO05D005805 2.5e-176 622.5 418 78.7
CARHR043360 Cardamine hirsuta HOM05D002373 ORTHO05D005805 7.1e-176 620.9 410 80.7
BraA01t02609Z Brassica rapa HOM05D002373 ORTHO05D005805 2.7e-175 619.0 417 81.3
Aa31LG10G1990 Aethionema arabicum HOM05D002373 ORTHO05D005805 1.6e-172 609.8 417 78.7
THA.LOC104818083 Tarenaya hassleriana HOM05D002373 ORTHO05D005805 8.2e-156 554.3 423 72.1
Thecc.07G091400 Theobroma cacao HOM05D002373 ORTHO05D005805 2.4e-147 526.2 423 68.3
Duzib213G0111 Durio zibethinus HOM05D002373 ORTHO05D005805 4.1e-147 525.4 423 67.8
COL.COLO4_27181 Corchorus olitorius HOM05D002373 ORTHO05D005805 5.3e-147 525.0 423 68.1
BcaB02g10932 Brassica carinata HOM05D002373 ORTHO05D005805 1.3e-145 520.4 424 70.0
Atru.chr2.2485 Acer truncatum HOM05D002373 ORTHO05D005805 1.2e-143 513.8 423 67.1
Manes.15G087600 Manihot esculenta HOM05D002373 ORTHO05D005805 3.0e-142 509.2 431 66.6
Gorai.002G069500 Gossypium raimondii HOM05D002373 ORTHO05D005805 5.2e-142 508.4 425 66.4
Gohir.D01G049600 Gossypium hirsutum HOM05D002373 ORTHO05D005805 6.7e-142 508.1 425 66.1
Potri.011G118500 Populus trichocarpa HOM05D002373 ORTHO05D005805 1.2e-141 507.3 439 65.6
Sabra11G0103400 Salix brachista HOM05D002373 ORTHO05D005805 1.2e-141 507.3 439 65.1
Cfa020575 Carpinus fangiana HOM05D002373 ORTHO05D005805 4.4e-141 505.4 428 66.1
Ciclev10007467m.g Citrus clementina HOM05D002373 ORTHO05D005805 9.7e-141 504.2 426 65.3
Gohir.A01G063200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 9.7e-141 504.2 425 66.6
QL08p022123 Quercus lobata HOM05D002373 ORTHO05D005805 4.8e-140 501.9 422 65.4
Haze_09436 Corylus avellana HOM05D002373 ORTHO05D005805 7.0e-139 498.0 428 65.7
TWI38G2145 Tripterygium wilfordii HOM05D002373 ORTHO05D005805 9.1e-139 497.7 446 63.7
MD03G1228500 Malus domestica HOM05D002373 ORTHO05D005805 2.7e-138 496.1 421 64.1
CiPaw.12G118900 Carya illinoinensis HOM05D002373 ORTHO05D005805 7.7e-138 494.6 430 65.1
Lj8A155T98 Lonicera japonica HOM05D002373 ORTHO05D005805 7.7e-138 494.6 427 65.3
RcHm_v2.0_Chr5g0033231 Rosa chinensis HOM05D002373 ORTHO05D005805 5.0e-137 491.9 421 64.8
vmacro09528 Vaccinium macrocarpon HOM05D002373 ORTHO05D005805 6.5e-137 491.5 444 63.7
Sc01g0008920 Simmondsia chinensis HOM05D002373 ORTHO05D005805 8.5e-137 491.1 403 66.7
CSS0014083 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 9.4e-136 487.6 424 64.9
CSS0015785 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 9.4e-136 487.6 424 64.9
Prupe.4G180200 Prunus persica HOM05D002373 ORTHO05D005805 2.7e-135 486.1 421 64.6
Dinv00353 Davidia involucrata HOM05D002373 ORTHO05D005805 1.8e-134 483.4 426 64.3
Dinv14923 Davidia involucrata HOM05D002373 ORTHO05D005805 1.8e-134 483.4 426 64.3
AUR62039199 Chenopodium quinoa HOM05D002373 ORTHO05D005805 3.0e-134 482.6 422 63.7
AUR62019435 Chenopodium quinoa HOM05D002373 ORTHO05D005805 5.2e-134 481.9 424 63.7
Phvul.011G158800 Phaseolus vulgaris HOM05D002373 ORTHO05D005805 5.2e-134 481.9 434 63.8
Hma1.2p1_0458F.1_g157050 Hydrangea macrophylla HOM05D002373 ORTHO05D005805 8.8e-134 481.1 410 64.9
FvH4_3g19810 Fragaria vesca HOM05D002373 ORTHO05D005805 1.2e-133 480.7 421 64.4
arahy.Tifrunner.gnm1.ann1.7QC79Z Arachis hypogaea HOM05D002373 ORTHO05D005805 4.4e-133 478.8 426 64.1
arahy.Tifrunner.gnm1.ann1.YQ4YNY Arachis hypogaea HOM05D002373 ORTHO05D005805 7.5e-133 478.0 426 64.1
Medtr8g463270 Medicago truncatula HOM05D002373 ORTHO05D005805 7.5e-133 478.0 436 62.4
FAN11G0806 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.3e-132 477.2 421 64.1
Glyma.12G152100 Glycine max HOM05D002373 ORTHO05D005805 1.3e-132 477.2 427 63.9
PGR031G0335 Punica granatum HOM05D002373 ORTHO05D005805 1.3e-132 477.2 423 62.6
TPR.G22533 Trifolium pratense HOM05D002373 ORTHO05D005805 2.8e-132 476.1 436 63.1
VMungo1127G0771 Vigna mungo HOM05D002373 ORTHO05D005805 2.8e-132 476.1 434 63.1
Gorai.009G384500 Gossypium raimondii HOM05D002373 ORTHO05D005805 3.7e-132 475.7 425 63.8
CANSAT56G0489 Cannabis sativa HOM05D002373 ORTHO05D005805 6.3e-132 474.9 428 62.9
DCAR_013112 Daucus carota HOM05D002373 ORTHO05D005805 6.3e-132 474.9 429 62.2
Gohir.D05G352400 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.1e-131 474.2 425 63.5
Gohir.A04G032200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 2.4e-131 473.0 425 63.3
Cc05_g11960 Coffea canephora HOM05D002373 ORTHO05D005805 4.1e-131 472.2 425 64.2
Ca_23054_v3 Cicer arietinum L. HOM05D002373 ORTHO05D005805 5.4e-131 471.9 425 63.5
TAR627G0461 Trochodendron aralioides HOM05D002373 ORTHO05D005805 5.4e-131 471.9 428 61.7
Hund22839 Selenicereus undatus HOM05D002373 ORTHO05D005805 7.0e-131 471.5 429 62.0
Glyma.06G240400 Glycine max HOM05D002373 ORTHO05D005805 1.2e-130 470.7 417 63.5
CSS0025198 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 4.5e-130 468.8 431 63.3
Nn1g04126 Nelumbo nucifera HOM05D002373 ORTHO05D005805 1.3e-129 467.2 430 62.1
Eucgr.F03311 Eucalyptus grandis HOM05D002373 ORTHO05D005805 2.9e-129 466.1 423 62.2
CiPaw.11G170300 Carya illinoinensis HOM05D002373 ORTHO05D005805 3.8e-129 465.7 427 63.2
ECA234G1789 Erigeron canadensis HOM05D002373 ORTHO05D005805 5.0e-129 465.3 424 61.8
CSS0013354 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 6.6e-129 464.9 431 63.3
Lj3g0007605 Lotus japonicus HOM05D002373 ORTHO05D005805 3.3e-128 462.6 433 61.9
Solyc07g063080.4 Solanum lycopersicum HOM05D002373 ORTHO05D005805 7.2e-128 461.5 427 61.1
Lalb_Chr03g0030661 Lupinus albus HOM05D002373 ORTHO05D005805 1.6e-127 460.3 435 61.1
Peaxi162Scf00069g00161 Petunia axillaris HOM05D002373 ORTHO05D005805 2.8e-127 459.5 419 62.1
FAN21G3426 Fragaria x ananassa HOM05D002373 ORTHO05D005805 3.6e-127 459.1 421 62.7
Psat4g163960 Pisum sativum HOM05D002373 ORTHO05D005805 4.7e-127 458.8 426 62.2
Sed0015726 Sechium edule HOM05D002373 ORTHO05D005805 4.7e-127 458.8 423 61.9
Migut.M00800 Erythranthe guttata HOM05D002373 ORTHO05D005805 1.4e-126 457.2 423 61.7
MSTRG.15235 Avicennia marina HOM05D002373 ORTHO05D005805 1.8e-126 456.8 444 60.8
Sopen07g031270 Solanum pennellii HOM05D002373 ORTHO05D005805 3.0e-126 456.1 441 60.3
Nitab4.5_0001241g0050 Nicotiana tabacum HOM05D002373 ORTHO05D005805 6.8e-126 454.9 427 61.6
PGSC0003DMG400012444 Solanum tuberosum HOM05D002373 ORTHO05D005805 8.9e-126 454.5 441 60.3
PSO832G3381 Papaver somniferum HOM05D002373 ORTHO05D005805 2.6e-125 453.0 428 61.0
Aqoxy4G00738 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 4.4e-125 452.2 422 59.2
FAN16G1089 Fragaria x ananassa HOM05D002373 ORTHO05D005805 7.5e-125 451.4 417 62.1
CAN.G162.52 Capsicum annuum HOM05D002373 ORTHO05D005805 4.9e-124 448.7 441 59.2
Oeu024908.1 Olea europaea HOM05D002373 ORTHO05D005805 1.8e-123 446.8 428 60.5
Nitab4.5_0001336g0070 Nicotiana tabacum HOM05D002373 ORTHO05D005805 4.1e-123 445.7 431 60.3
PSO210G2728 Papaver somniferum HOM05D002373 ORTHO05D005805 4.1e-123 445.7 427 60.0
ECA240G3893 Erigeron canadensis HOM05D002373 ORTHO05D005805 5.4e-123 445.3 414 58.0
SalBow6G5097 Salvia bowleyana HOM05D002373 ORTHO05D005805 5.4e-123 445.3 404 62.4
FAN25G1482 Fragaria x ananassa HOM05D002373 ORTHO05D005805 7.0e-123 444.9 423 61.0
Ah.04g164800 Amaranthus hybridus HOM05D002373 ORTHO05D005805 2.0e-122 443.4 418 60.8
Sed0011872 Sechium edule HOM05D002373 ORTHO05D005805 2.7e-122 443.0 423 61.2
SalBow6G1433 Salvia bowleyana HOM05D002373 ORTHO05D005805 1.7e-121 440.3 425 60.5
Actinidia18767 Actinidia chinensis HOM05D002373 ORTHO05D005805 8.6e-121 438.0 427 59.3
MELO3C016695.2 Cucumis melo HOM05D002373 ORTHO05D005805 1.1e-120 437.6 449 58.6
HanXRQChr12g0361121 Helianthus annuus HOM05D002373 ORTHO05D005805 1.5e-120 437.2 412 60.0
Cpa.g.sc80.74 Carica papaya HOM05D002373 ORTHO05D005805 5.6e-120 435.3 364 67.0
ClCG11G018040 Citrullus lanatus HOM05D002373 ORTHO05D005805 2.8e-119 433.0 448 57.8
Lsat_1_v5_gn_5_128020 Lactuca sativa HOM05D002373 ORTHO05D005805 3.6e-119 432.6 411 60.3
SGA_v2.0_scaffold73G24259 Striga asiatica HOM05D002373 ORTHO05D005805 3.4e-117 426.0 420 58.1
CsaV3_4G033660 Cucumis sativus L. HOM05D002373 ORTHO05D005805 1.4e-115 420.6 392 62.8
PSO782G4223 Papaver somniferum HOM05D002373 ORTHO05D005805 7.0e-115 418.3 441 55.1
Ah.06g184400 Amaranthus hybridus HOM05D002373 ORTHO05D005805 1.0e-113 414.5 408 57.6
MSTRG.12902 Avicennia marina HOM05D002373 ORTHO05D005805 3.0e-113 412.9 425 56.7
ATR0737G089 Amborella trichopoda HOM05D002373 ORTHO05D005805 6.6e-113 411.8 414 57.7
EL10Ac4g08196 Beta vulgaris HOM05D002373 ORTHO05D005805 2.5e-112 409.8 423 57.9
Os01g0748000 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D005805 2.3e-110 403.3 419 56.3
Lalb_Chr01g0016821 Lupinus albus HOM05D002373 ORTHO05D005805 4.0e-110 402.5 417 57.1
SHI19230 Sapria himalayana HOM05D002373 ORTHO05D005805 1.2e-106 391.0 436 56.0
BcaC06g33075 Brassica carinata HOM05D002373 ORTHO05D005805 1.0e-105 387.9 281 74.0
Zm00001eb153090 Zea mays HOM05D002373 ORTHO05D005805 4.3e-104 382.5 419 53.9
HanXRQChr10g0305641 Helianthus annuus HOM05D002373 ORTHO05D005805 7.3e-104 381.7 409 55.0
Zm00001eb371030 Zea mays HOM05D002373 ORTHO05D005805 5.4e-99 365.5 418 51.4
HanXRQChr10g0302701 Helianthus annuus HOM05D002373 ORTHO05D005805 2.1e-98 363.6 403 52.4
CDE10G0260 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 1.6e-95 354.0 407 53.6
HPP92_006380 Vanilla planifolia HOM05D002373 ORTHO05D005805 1.2e-93 347.8 387 54.3
MD11G1249600 Malus domestica HOM05D002373 ORTHO05D005805 3.1e-86 323.2 326 57.7
SEGI_09406 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 4.9e-84 315.8 401 48.6
SMO364G0144 Selaginella moellendorffii HOM05D002373 ORTHO05D005805 1.8e-78 297.4 406 44.8
unitig_26.g9526 Utricularia gibba HOM05D002373 ORTHO05D005805 1.8e-78 297.4 433 46.2
CDE10G0423 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 3.1e-78 296.6 398 48.5
Lsat_1_v5_gn_9_97921 Lactuca sativa HOM05D002373 ORTHO05D005805 7.6e-77 292.0 353 50.1
AagrBONN_evm.TU.Sc2ySwM_368.419 Anthoceros agrestis HOM05D002373 ORTHO05D005805 8.4e-76 288.5 431 45.2
CDE10G1360 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 4.2e-75 286.2 396 46.7
Rhsim04G0021600 Rhododendron simsii HOM05D002373 ORTHO05D005805 3.5e-74 283.1 435 42.3
Mapoly0084s0004 Marchantia polymorpha HOM05D002373 ORTHO05D005805 4.5e-69 266.2 446 40.6
GSVIVG01014319001 Vitis vinifera HOM05D002373 ORTHO05D005805 7.9e-66 255.4 190 68.9
HanXRQChr12g0364191 Helianthus annuus HOM05D002373 ORTHO05D005805 5.3e-62 242.7 402 43.5
GSVIVG01014318001 Vitis vinifera HOM05D002373 ORTHO05D005805 7.7e-53 212.2 157 72.6
Pp3c13_12110 Physcomitrium patens HOM05D002373 ORTHO05D005805 1.1e-48 198.4 440 35.2
HanXRQChr10g0302211 Helianthus annuus HOM05D002373 ORTHO05D005805 3.7e-47 193.4 275 47.3
HanXRQChr08g0223271 Helianthus annuus HOM05D002373 ORTHO05D005805 1.4e-46 191.4 172 63.4
arahy.Tifrunner.gnm1.ann1.B0SKQG Arachis hypogaea HOM05D000980 ORTHO05D000649 6.5e-44 182.6 143 66.4
Dinv20180 Davidia involucrata HOM05D002373 ORTHO05D005805 4.2e-43 179.9 106 82.1
SEGI_11294 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 3.3e-32 143.7 175 46.3
Cre12.g529450 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D005805 2.9e-28 130.6 392 28.6
Aqoxy1G02769 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 1.5e-24 118.2 89 69.7
SEGI_27326 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 2.6e-24 117.5 166 45.2
SEGI_01502 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 3.4e-24 117.1 177 41.8
SEGI_17099 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 7.0e-22 109.4 117 51.3
SEGI_30818 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 1.6e-21 108.2 98 58.2
SEGI_17035 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 1.9e-11 74.7 134 35.8
CAN.G1.26 Capsicum annuum HOM05D005078 ORTHO05D007574 8.3e-07 59.3 172 26.7
Cre10.g433050 Chlamydomonas reinhardtii HOM05D005078 ORTHO05D007574 1.1e-06 58.9 93 37.6
Thhalv10020106m.g Eutrema salsugineum HOM05D005078 ORTHO05D007574 1.4e-06 58.5 172 26.2
Glyma.08G075100 Glycine max HOM05D005078 ORTHO05D007574 1.4e-06 58.5 172 25.6
PGR142G3913 Punica granatum HOM05D005078 ORTHO05D007574 1.8e-06 58.2 172 25.6
HPP92_016129 Vanilla planifolia HOM05D005078 ORTHO05D007574 1.8e-06 58.2 94 34.0
Aa31LG8G6520 Aethionema arabicum HOM05D005078 ORTHO05D007574 2.4e-06 57.8 172 26.2
Glyma.05G120400 Glycine max HOM05D005078 ORTHO05D007574 2.4e-06 57.8 172 25.6
PGSC0003DMG400005500 Solanum tuberosum HOM05D005078 ORTHO05D007574 2.4e-06 57.8 172 26.7
VMungo0251G0911 Vigna mungo HOM05D005078 ORTHO05D007574 2.4e-06 57.8 172 25.6
Zm00001eb408290 Zea mays HOM05D005078 ORTHO05D007574 2.4e-06 57.8 172 26.2
AL3G33190 Arabidopsis lyrata HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
AT3G19720 Arabidopsis thaliana HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
BcaB04g20681 Brassica carinata HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
BcaC09g48935 Brassica carinata HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
A01p34970 Brassica napus HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
C01p44380 Brassica napus HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
BolC1t04403H Brassica oleracea HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
BraA01t03580Z Brassica rapa HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
Carub.0003s1960 Capsella rubella HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
Sp3g17760 Schrenkiella parvula HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.2
Solyc10g047050.2 Solanum lycopersicum HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.7
Sopen10g017000 Solanum pennellii HOM05D005078 ORTHO05D007574 3.2e-06 57.4 172 26.7
MSTRG.16563 Avicennia marina HOM05D005078 ORTHO05D007574 4.1e-06 57.0 215 24.7
COL.COLO4_20871 Corchorus olitorius HOM05D005078 ORTHO05D007574 5.4e-06 56.6 229 24.5
ECA236G3503 Erigeron canadensis HOM05D005078 ORTHO05D007574 7.0e-06 56.2 94 35.1
Lalb_Chr07g0189431 Lupinus albus HOM05D005078 ORTHO05D007574 9.2e-06 55.8 227 24.2


User provided reference genes

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