Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10925 Brassica carinata HOM05D004111 ORTHO05D091109 5.4e-50 200.7 100 100.0
AT4G29720 Arabidopsis thaliana HOM05D004111 ORTHO05D005252 3.8e-19 98.2 80 66.2
AL7G22590 Arabidopsis lyrata HOM05D004111 ORTHO05D005252 6.4e-19 97.4 69 72.5
Carub.0007s1080 Capsella rubella HOM05D004111 ORTHO05D005252 3.2e-18 95.1 69 68.1
Sp7g27490 Schrenkiella parvula HOM05D004111 ORTHO05D005252 4.2e-18 94.7 69 69.6
Thhalv10024841m.g Eutrema salsugineum HOM05D004111 ORTHO05D005252 5.4e-18 94.4 69 69.6
BcaNung00484 Brassica carinata HOM05D004111 ORTHO05D005252 9.3e-18 93.6 69 65.2
BraA03t14962Z Brassica rapa HOM05D004111 ORTHO05D005252 6.0e-17 90.9 76 57.9
CARHR237570 Cardamine hirsuta HOM05D004111 ORTHO05D005252 6.0e-17 90.9 69 66.7
A03p59020 Brassica napus HOM05D004111 ORTHO05D005252 1.0e-16 90.1 69 62.3
C07p57070 Brassica napus HOM05D004111 ORTHO05D005252 6.7e-16 87.4 69 62.3
BolC7t46178H Brassica oleracea HOM05D004111 ORTHO05D005252 6.7e-16 87.4 69 62.3
BolC1t00935H Brassica oleracea HOM05D004111 ORTHO05D005252 8.7e-16 87.0 69 59.4
A01p08410 Brassica napus HOM05D004111 ORTHO05D005252 1.1e-15 86.7 69 58.0
BraA01t00789Z Brassica rapa HOM05D004111 ORTHO05D005252 1.1e-15 86.7 69 58.0
BcaC09g51749 Brassica carinata HOM05D004111 ORTHO05D005252 3.3e-15 85.1 70 60.0
BcaC09g52222 Brassica carinata HOM05D004111 ORTHO05D005252 3.3e-15 85.1 69 59.4
C01p09740 Brassica napus HOM05D004111 ORTHO05D005252 3.3e-15 85.1 69 59.4
THA.LOC104814620 Tarenaya hassleriana HOM05D004111 ORTHO05D005252 9.6e-15 83.6 69 60.9
THA.LOC104803973 Tarenaya hassleriana HOM05D004111 ORTHO05D005252 6.9e-13 77.4 62 61.3
Aa31LG2G20850 Aethionema arabicum HOM05D004111 ORTHO05D005252 5.8e-12 74.3 69 55.1
Oeu042656.1 Olea europaea HOM05D004111 ORTHO05D005252 4.2e-10 68.2 69 49.3
BcaB07g33964 Brassica carinata HOM05D000109 ORTHO05D000520 7.1e-10 67.4 40 85.0
CAN.G25.8 Capsicum annuum HOM05D004111 ORTHO05D005252 1.6e-09 66.2 73 45.2
Manes.03G033700 Manihot esculenta HOM05D004111 ORTHO05D005252 1.6e-09 66.2 69 46.4
Cc06_g11400 Coffea canephora HOM05D004111 ORTHO05D005252 2.1e-09 65.9 69 46.4
Peaxi162Scf01461g00001 Petunia axillaris HOM05D004111 ORTHO05D005252 2.7e-09 65.5 73 45.2
Potri.006G151300 Populus trichocarpa HOM05D004111 ORTHO05D005252 2.7e-09 65.5 69 46.4
Actinidia29901 Actinidia chinensis HOM05D004111 ORTHO05D005252 4.6e-09 64.7 75 44.0
Manes.16G102100 Manihot esculenta HOM05D004111 ORTHO05D005252 6.0e-09 64.3 69 44.9
Oeu006970.1 Olea europaea HOM05D004111 ORTHO05D005252 1.0e-08 63.5 69 44.9
Ciclev10007864m.g Citrus clementina HOM05D004111 ORTHO05D005252 1.3e-08 63.2 69 43.5
Duzib168G1590 Durio zibethinus HOM05D004111 ORTHO05D005252 1.3e-08 63.2 73 43.8
Hma1.2p1_2664F.1_g326440 Hydrangea macrophylla HOM05D004111 ORTHO05D005252 1.3e-08 63.2 69 44.9
Sabra06G0119800 Salix brachista HOM05D004111 ORTHO05D005252 1.3e-08 63.2 68 45.6
FAN01G2766 Fragaria x ananassa HOM05D004111 ORTHO05D005252 1.8e-08 62.8 69 42.0
FAN10G0602 Fragaria x ananassa HOM05D004111 ORTHO05D005252 1.8e-08 62.8 69 42.0
TAR624G1353 Trochodendron aralioides HOM05D004111 ORTHO05D005252 1.8e-08 62.8 69 42.0
Glyma.15G169600 Glycine max HOM05D004111 ORTHO05D005252 2.3e-08 62.4 69 44.9
Nitab4.5_0003310g0050 Nicotiana tabacum HOM05D004111 ORTHO05D005252 3.0e-08 62.0 73 43.8
TWI63G1616 Tripterygium wilfordii HOM05D004111 ORTHO05D005252 3.0e-08 62.0 74 43.2
Eucgr.C00897 Eucalyptus grandis HOM05D004111 ORTHO05D005252 3.9e-08 61.6 69 42.0
FvH4_7g01430 Fragaria vesca HOM05D004111 ORTHO05D005252 3.9e-08 61.6 69 40.6
FAN06G2956 Fragaria x ananassa HOM05D004111 ORTHO05D005252 3.9e-08 61.6 69 40.6
Phvul.009G232400 Phaseolus vulgaris HOM05D004111 ORTHO05D005252 3.9e-08 61.6 69 44.9
TWI34G1056 Tripterygium wilfordii HOM05D004111 ORTHO05D005252 3.9e-08 61.6 74 41.9
VMungo1309G0774 Vigna mungo HOM05D004111 ORTHO05D005252 3.9e-08 61.6 69 44.9
Dinv42319 Davidia involucrata HOM05D004111 ORTHO05D005252 5.1e-08 61.2 69 44.9
Solyc05g018880.1 Solanum lycopersicum HOM05D004111 ORTHO05D005252 6.7e-08 60.8 69 43.5
Sopen05g016370 Solanum pennellii HOM05D004111 ORTHO05D005252 6.7e-08 60.8 69 43.5
Thecc.09G089400 Theobroma cacao HOM05D004111 ORTHO05D005252 6.7e-08 60.8 73 43.8
COL.COLO4_18200 Corchorus olitorius HOM05D004111 ORTHO05D005252 8.7e-08 60.5 73 43.8
DCAR_011972 Daucus carota HOM05D004111 ORTHO05D005252 8.7e-08 60.5 69 42.0
Nitab4.5_0000095g0080 Nicotiana tabacum HOM05D004111 ORTHO05D005252 8.7e-08 60.5 73 42.5
RcHm_v2.0_Chr2g0093331 Rosa chinensis HOM05D004111 ORTHO05D005252 8.7e-08 60.5 69 40.6
GSVIVG01015201001 Vitis vinifera HOM05D004111 ORTHO05D005252 8.7e-08 60.5 69 39.1
Atru.chr7.1589 Acer truncatum HOM05D004111 ORTHO05D005252 1.1e-07 60.1 69 40.6
MELO3C004624.2 Cucumis melo HOM05D004111 ORTHO05D005252 1.1e-07 60.1 69 40.6
Gohir.D05G031300 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.1e-07 60.1 73 43.8
Gorai.009G031500 Gossypium raimondii HOM05D004111 ORTHO05D005252 1.1e-07 60.1 73 43.8
CiPaw.03G216100 Carya illinoinensis HOM05D004111 ORTHO05D005252 1.5e-07 59.7 73 39.7
Gohir.A05G029900 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.5e-07 59.7 69 44.9
Nn8g38866 Nelumbo nucifera HOM05D004111 ORTHO05D005252 1.5e-07 59.7 69 40.6
PGSC0003DMG400021391 Solanum tuberosum HOM05D004111 ORTHO05D005252 1.5e-07 59.7 69 43.5
Lsat_1_v5_gn_7_37140 Lactuca sativa HOM05D004111 ORTHO05D005252 1.9e-07 59.3 74 41.9
CsaV3_2G001470 Cucumis sativus L. HOM05D004111 ORTHO05D005252 2.5e-07 58.9 76 39.5
Duzib150G0164 Durio zibethinus HOM05D004111 ORTHO05D005252 2.5e-07 58.9 69 43.5
FAN03G1185 Fragaria x ananassa HOM05D004111 ORTHO05D005252 2.5e-07 58.9 69 40.6
Lalb_Chr13g0299721 Lupinus albus HOM05D004111 ORTHO05D005252 2.5e-07 58.9 69 43.5
MD02G1079400 Malus domestica HOM05D004111 ORTHO05D005252 2.5e-07 58.9 69 39.1
MD15G1206900 Malus domestica HOM05D004111 ORTHO05D005252 2.5e-07 58.9 69 40.6
ECA234G4608 Erigeron canadensis HOM05D004111 ORTHO05D005252 3.3e-07 58.5 71 40.8
MSTRG.10564 Avicennia marina HOM05D004111 ORTHO05D005252 7.4e-07 57.4 73 42.5
vmacro06291 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 7.4e-07 57.4 68 39.7
CANSAT25G0955 Cannabis sativa HOM05D004111 ORTHO05D005252 9.6e-07 57.0 73 42.5
ClCG11G001760 Citrullus lanatus HOM05D004111 ORTHO05D005252 9.6e-07 57.0 69 40.6
Nitab4.5_0016456g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 9.6e-07 57.0 69 44.9
CANSAT56G0788 Cannabis sativa HOM05D004111 ORTHO05D005252 1.3e-06 56.6 73 42.5
Gohir.A07G011100 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.6e-06 56.2 69 42.0
Gohir.D07G011175 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.6e-06 56.2 69 42.0
Gorai.001G011800 Gossypium raimondii HOM05D004111 ORTHO05D005252 1.6e-06 56.2 69 42.0
MBI01_g16602_MAGBIO Magnolia biondii HOM05D004111 ORTHO05D005252 1.6e-06 56.2 69 42.0
Sed0015676 Sechium edule HOM05D004111 ORTHO05D005252 1.6e-06 56.2 69 39.1
Aqoxy7G01214 Aquilegia oxysepala HOM05D004111 ORTHO05D005252 2.1e-06 55.8 69 43.5
Cpa.g.sc61.52 Carica papaya HOM05D004111 ORTHO05D005252 2.1e-06 55.8 70 38.6
Cfa003086 Carpinus fangiana HOM05D004111 ORTHO05D005252 2.1e-06 55.8 69 39.1
Rhsim03G0232300 Rhododendron simsii HOM05D004111 ORTHO05D005252 2.1e-06 55.8 76 38.2
arahy.Tifrunner.gnm1.ann1.0E9UWZ Arachis hypogaea HOM05D004111 ORTHO05D005252 2.8e-06 55.5 75 40.0
arahy.Tifrunner.gnm1.ann1.0IF9U9 Arachis hypogaea HOM05D004111 ORTHO05D005252 2.8e-06 55.5 75 40.0
CiPaw.04G149300 Carya illinoinensis HOM05D004111 ORTHO05D005252 2.8e-06 55.5 69 37.7
Nitab4.5_0004978g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 2.8e-06 55.5 69 44.9
Haze_25913 Corylus avellana HOM05D004111 ORTHO05D005252 3.7e-06 55.1 69 39.1
HanXRQChr03g0060801 Helianthus annuus HOM05D004111 ORTHO05D005252 3.7e-06 55.1 69 42.0
ECA240G0409 Erigeron canadensis HOM05D004111 ORTHO05D005252 4.8e-06 54.7 77 40.3
Psat1g141360 Pisum sativum HOM05D004111 ORTHO05D005252 4.8e-06 54.7 78 35.9
TAR383G0321 Trochodendron aralioides HOM05D004111 ORTHO05D005252 4.8e-06 54.7 69 40.6
AUR62027508 Chenopodium quinoa HOM05D004111 ORTHO05D005252 6.2e-06 54.3 76 38.2
AUR62033975 Chenopodium quinoa HOM05D004111 ORTHO05D005252 6.2e-06 54.3 76 38.2
Sc08g0008470 Simmondsia chinensis HOM05D004111 ORTHO05D005252 6.2e-06 54.3 69 40.6
Solyc12g008850.3 Solanum lycopersicum HOM05D004111 ORTHO05D005252 6.2e-06 54.3 73 35.6
TAR636G0804 Trochodendron aralioides HOM05D004111 ORTHO05D005252 6.2e-06 54.3 68 38.2
Lalb_Chr08g0232141 Lupinus albus HOM05D004111 ORTHO05D005252 8.2e-06 53.9 71 42.3
Medtr2g039160 Medicago truncatula HOM05D004111 ORTHO05D005252 8.2e-06 53.9 79 36.7
Peaxi162Scf00498g00033 Petunia axillaris HOM05D004111 ORTHO05D005252 8.2e-06 53.9 74 35.1


User provided reference genes

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