Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 4.2e-65 251.1 122 100.0
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 3.1e-47 191.8 129 79.1
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 9.8e-46 186.8 127 77.2
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 5.4e-44 181.0 126 76.2
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 5.4e-44 181.0 126 76.2
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 2.1e-43 179.1 126 75.4
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 2.1e-43 179.1 126 75.4
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 4.6e-43 177.9 128 73.4
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 3.0e-42 175.3 126 74.6
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 8.6e-42 173.7 119 76.5
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 1.5e-41 172.9 130 70.8
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 4.4e-38 161.4 130 68.5
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 1.7e-37 159.5 133 66.9
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 3.6e-32 141.7 121 64.5
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 8.9e-31 137.1 121 60.3
C06p09860 Brassica napus HOM05D000815 ORTHO05D000636 3.4e-30 135.2 114 63.2
BolC6t36057H Brassica oleracea HOM05D000815 ORTHO05D000636 3.4e-30 135.2 114 63.2
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 7.6e-30 134.0 115 61.7
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.4e-22 108.6 130 46.2
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 1.7e-21 106.3 134 45.5
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.9e-20 102.8 123 43.1
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 7.9e-19 97.4 124 52.4
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.9e-17 92.8 116 43.1
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 1.9e-17 92.8 122 47.5
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.9e-17 92.8 132 43.9
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 5.6e-17 91.3 136 44.1
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 7.3e-17 90.9 88 53.4
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 9.6e-17 90.5 133 41.4
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 9.6e-17 90.5 131 41.2
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 1.3e-16 90.1 131 44.3
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.3e-16 90.1 131 44.3
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 8.1e-16 87.4 134 40.3
BraA05t22338Z Brassica rapa HOM05D002144 ORTHO05D002170 3.1e-15 85.5 115 44.3
A05p35280 Brassica napus HOM05D002144 ORTHO05D002170 6.9e-15 84.3 115 43.5
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 6.9e-15 84.3 128 39.1
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 9.0e-15 84.0 121 42.1
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.2e-14 83.6 136 41.2
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 1.5e-14 83.2 122 38.5
C05p53460 Brassica napus HOM05D002144 ORTHO05D002170 2.6e-14 82.4 115 43.5
BolC5t34023H Brassica oleracea HOM05D002144 ORTHO05D002170 2.6e-14 82.4 115 43.5
A01p39510 Brassica napus HOM05D002144 ORTHO05D002170 4.5e-14 81.6 111 43.2
BraA01t03992Z Brassica rapa HOM05D002144 ORTHO05D002170 4.5e-14 81.6 111 43.2
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 4.5e-14 81.6 125 37.6
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 4.5e-14 81.6 135 38.5
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 7.6e-14 80.9 131 38.2
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 1.3e-13 80.1 122 43.4
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 2.9e-13 79.0 124 41.1
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 8.4e-13 77.4 137 38.7
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 1.1e-12 77.0 131 40.5
C01p50450 Brassica napus HOM05D002144 ORTHO05D002170 2.4e-12 75.9 111 42.3
BolC1t04997H Brassica oleracea HOM05D002144 ORTHO05D002170 2.4e-12 75.9 111 42.3
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 4.2e-12 75.1 135 39.3
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 1.2e-11 73.6 137 38.0
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 1.2e-11 73.6 111 39.6
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 1.6e-11 73.2 142 35.2
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 1.6e-11 73.2 134 38.8
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 2.1e-11 72.8 127 36.2
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 3.5e-11 72.0 129 39.5
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 3.5e-11 72.0 131 39.7
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 6.0e-11 71.2 131 38.2
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 7.9e-11 70.9 79 45.6
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.8e-10 69.7 134 37.3
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 1.8e-10 69.7 85 41.2
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 5.1e-10 68.2 85 42.4
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 5.1e-10 68.2 142 34.5
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 6.7e-10 67.8 128 34.4
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 6.7e-10 67.8 111 37.8
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 8.7e-10 67.4 127 36.2
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.1e-09 67.0 142 37.3
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.9e-09 66.2 81 40.7
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 2.5e-09 65.9 82 50.0
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 2.5e-09 65.9 129 35.7
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 3.3e-09 65.5 75 45.3
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 4.3e-09 65.1 127 35.4
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 4.3e-09 65.1 148 33.1
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 5.6e-09 64.7 121 36.4
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 7.4e-09 64.3 90 44.4
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 7.4e-09 64.3 131 38.9
CARHR089060 Cardamine hirsuta HOM05D002144 ORTHO05D002170 9.6e-09 63.9 122 37.7
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 9.6e-09 63.9 79 45.6
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 9.6e-09 63.9 132 39.4
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.3e-08 63.5 96 37.5
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.3e-08 63.5 96 37.5
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.6e-08 63.2 97 37.1
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 1.6e-08 63.2 133 33.1
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.6e-08 63.2 104 37.5
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 2.8e-08 62.4 122 34.4
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 2.8e-08 62.4 131 33.6
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 2.8e-08 62.4 106 37.7
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 4.8e-08 61.6 107 33.6
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 6.2e-08 61.2 146 34.2
Eucgr.J02610 Eucalyptus grandis HOM05D002144 ORTHO05D002170 6.2e-08 61.2 133 36.8
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 6.2e-08 61.2 89 40.4
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 8.1e-08 60.8 134 32.8
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 8.1e-08 60.8 86 44.2
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 8.1e-08 60.8 76 44.7
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 8.1e-08 60.8 76 43.4
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.4e-07 60.1 86 43.0
Carub.0003s1379 Capsella rubella HOM05D002144 ORTHO05D002170 1.8e-07 59.7 125 40.0
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 1.8e-07 59.7 96 37.5
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 1.8e-07 59.7 63 52.4
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 2.4e-07 59.3 85 37.6
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 2.4e-07 59.3 29 86.2
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 2.4e-07 59.3 29 86.2
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 2.4e-07 59.3 29 86.2
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 3.1e-07 58.9 131 33.6
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 3.1e-07 58.9 120 35.0
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 4.0e-07 58.5 125 32.0
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 5.3e-07 58.2 135 35.6
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 5.3e-07 58.2 31 77.4
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 6.9e-07 57.8 29 82.8
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 6.9e-07 57.8 95 36.8
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 6.9e-07 57.8 113 33.6
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 6.9e-07 57.8 32 71.9
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 9.0e-07 57.4 35 65.7
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 9.0e-07 57.4 106 34.9
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 9.0e-07 57.4 74 41.9
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 9.0e-07 57.4 111 35.1
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 1.2e-06 57.0 129 32.6
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 1.2e-06 57.0 31 74.2
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 1.2e-06 57.0 31 74.2
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 1.5e-06 56.6 120 32.5
CSS0005363 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 1.5e-06 56.6 88 39.8
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.5e-06 56.6 35 68.6
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 1.5e-06 56.6 35 65.7
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 2.0e-06 56.2 92 37.0
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 2.6e-06 55.8 35 68.6
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 2.6e-06 55.8 94 35.1
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 2.6e-06 55.8 94 36.2
C03p93120 Brassica napus HOM05D002144 ORTHO05D002170 3.4e-06 55.5 103 34.0
CANSAT56G3315 Cannabis sativa HOM05D002144 ORTHO05D002170 3.4e-06 55.5 94 38.3
MELO3C004219.2 Cucumis melo HOM05D002144 ORTHO05D002170 3.4e-06 55.5 113 32.7
Thhalv10029065m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 3.4e-06 55.5 113 33.6
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 3.4e-06 55.5 126 33.3
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 3.4e-06 55.5 31 71.0
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 3.4e-06 55.5 31 71.0
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 3.4e-06 55.5 130 32.3
BcaC01g01556 Brassica carinata HOM05D002144 ORTHO05D002170 4.5e-06 55.1 103 34.0
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 4.5e-06 55.1 106 34.9
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 5.8e-06 54.7 113 34.5
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 5.8e-06 54.7 113 34.5
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 5.8e-06 54.7 113 33.6
THA.LOC104820752 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 5.8e-06 54.7 94 35.1
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 5.8e-06 54.7 136 36.0
BolC3t21612H Brassica oleracea HOM05D002144 ORTHO05D002170 7.6e-06 54.3 92 35.9
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.6e-06 54.3 95 34.7
Rhsim07G0190700 Rhododendron simsii HOM05D002144 ORTHO05D002170 7.6e-06 54.3 97 35.1
Sp6g02660 Schrenkiella parvula HOM05D002144 ORTHO05D002170 7.6e-06 54.3 116 33.6
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 7.6e-06 54.3 100 33.0
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 7.6e-06 54.3 94 34.0
BcaB01g02012 Brassica carinata HOM05D002144 ORTHO05D002170 1.0e-05 53.9 96 34.4
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 1.0e-05 53.9 85 36.5
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 1.0e-05 53.9 126 28.6
Ca_09348_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.0e-05 53.9 94 35.1
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.0e-05 53.9 95 34.7
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.0e-05 53.9 92 32.6
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 1.0e-05 53.9 94 37.2


User provided reference genes

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