Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10854 Brassica carinata HOM05D000797 ORTHO05D021638 3.5e-86 321.6 166 100.0
BcaB07g32765 Brassica carinata HOM05D009214 ORTHO05D096011 9.0e-26 120.9 92 75.0
BcaB01g02451 Brassica carinata HOM05D003591 ORTHO05D021638 6.3e-19 98.2 57 91.2
Sp1g40660 Schrenkiella parvula HOM05D000797 ORTHO05D004867 5.3e-18 95.1 65 78.5
BcaB07g33241 Brassica carinata HOM05D000797 ORTHO05D004867 1.2e-17 94.0 65 76.9
A06p00430 Brassica napus HOM05D000797 ORTHO05D004867 1.2e-17 94.0 65 76.9
BraA06t23257Z Brassica rapa HOM05D000797 ORTHO05D004867 1.2e-17 94.0 65 76.9
Thhalv10011375m.g Eutrema salsugineum HOM05D000797 ORTHO05D004867 1.5e-17 93.6 65 76.9
BcaC08g43603 Brassica carinata HOM05D000797 ORTHO05D004867 1.0e-16 90.9 65 75.4
C06p10010 Brassica napus HOM05D000797 ORTHO05D004867 1.0e-16 90.9 65 75.4
BolC6t36074H Brassica oleracea HOM05D000797 ORTHO05D004867 1.0e-16 90.9 65 75.4
Carub.0001s4347 Capsella rubella HOM05D000797 ORTHO05D004867 2.2e-16 89.7 65 69.2
CARHR044610 Cardamine hirsuta HOM05D000797 ORTHO05D004867 2.9e-16 89.4 65 73.8
Sabra03G0022400 Salix brachista HOM05D000797 ORTHO05D004867 2.9e-16 89.4 65 72.3
BcaB06g25418 Brassica carinata HOM05D000797 ORTHO05D004867 3.8e-16 89.0 65 72.3
Carub.0003s1350 Capsella rubella HOM05D000797 ORTHO05D004867 5.0e-16 88.6 65 70.8
Aa31LG10G830 Aethionema arabicum HOM05D000797 ORTHO05D004867 6.5e-16 88.2 65 72.3
BcaC01g03965 Brassica carinata HOM05D000797 ORTHO05D004867 6.5e-16 88.2 65 70.8
Thhalv10020481m.g Eutrema salsugineum HOM05D000797 ORTHO05D004867 6.5e-16 88.2 65 70.8
AL1G62950 Arabidopsis lyrata HOM05D000797 ORTHO05D004867 8.5e-16 87.8 65 67.7
A03p38560 Brassica napus HOM05D000797 ORTHO05D004867 8.5e-16 87.8 65 70.8
Sp3g12170 Schrenkiella parvula HOM05D000797 ORTHO05D004867 8.5e-16 87.8 65 70.8
BcaC05g29140 Brassica carinata HOM05D000797 ORTHO05D004867 1.1e-15 87.4 65 70.8
C05p53790 Brassica napus HOM05D000797 ORTHO05D004867 1.1e-15 87.4 65 70.8
AT1G54220 Arabidopsis thaliana HOM05D000797 ORTHO05D004867 1.4e-15 87.0 65 67.7
AT3G13930 Arabidopsis thaliana HOM05D000797 ORTHO05D004867 2.5e-15 86.3 65 69.2
CARHR088740 Cardamine hirsuta HOM05D000797 ORTHO05D004867 2.5e-15 86.3 65 69.2
BcaB04g18813 Brassica carinata HOM05D000797 ORTHO05D004867 4.2e-15 85.5 65 69.2
AL3G26110 Arabidopsis lyrata HOM05D000797 ORTHO05D004867 5.5e-15 85.1 65 67.7
Potri.003G043900 Populus trichocarpa HOM05D000797 ORTHO05D004867 9.4e-15 84.3 65 69.2
THA.LOC109117050 Tarenaya hassleriana HOM05D000797 ORTHO05D021638 9.4e-15 84.3 65 69.2
THA.LOC104810360 Tarenaya hassleriana HOM05D000797 ORTHO05D004867 1.2e-14 84.0 65 67.7
THA.LOC104814057 Tarenaya hassleriana HOM05D000797 ORTHO05D021638 2.7e-14 82.8 64 68.8
THA.LOC104822773 Tarenaya hassleriana HOM05D000797 ORTHO05D004867 2.7e-14 82.8 64 68.8
Aa31LG8G1120 Aethionema arabicum HOM05D000797 ORTHO05D004867 3.6e-14 82.4 65 64.6
COL.COLO4_30700 Corchorus olitorius HOM05D000797 ORTHO05D004867 3.6e-14 82.4 65 69.2
C03p46680 Brassica napus HOM05D000797 ORTHO05D004867 4.6e-14 82.0 70 65.7
BolC3t16932H Brassica oleracea HOM05D000797 ORTHO05D004867 4.6e-14 82.0 70 65.7
BraA03t13004Z Brassica rapa HOM05D000797 ORTHO05D004867 4.6e-14 82.0 70 65.7
Gohir.D05G138800 Gossypium hirsutum HOM05D000797 ORTHO05D004867 4.6e-14 82.0 65 67.7
GSVIVG01015168001 Vitis vinifera HOM05D000797 ORTHO05D004867 6.1e-14 81.6 57 73.7
BcaB08g34469 Brassica carinata HOM05D000471 ORTHO05D000199 1.0e-13 80.9 74 66.2
Duzib192G0315 Durio zibethinus HOM05D000797 ORTHO05D004867 1.0e-13 80.9 65 64.6
Gohir.A05G136800 Gossypium hirsutum HOM05D000797 ORTHO05D004867 1.0e-13 80.9 65 66.2
A05p35480 Brassica napus HOM05D000797 ORTHO05D004867 1.8e-13 80.1 76 61.8
BraA05t22358Z Brassica rapa HOM05D000797 ORTHO05D004867 1.8e-13 80.1 76 61.8
Ciclev10025308m.g Citrus clementina HOM05D000797 ORTHO05D004867 1.8e-13 80.1 65 66.2
Duzib235G0059 Durio zibethinus HOM05D000797 ORTHO05D004867 1.8e-13 80.1 65 66.2
Gorai.009G143100 Gossypium raimondii HOM05D000797 ORTHO05D004867 2.3e-13 79.7 65 64.6
Atru.chr1.3800 Acer truncatum HOM05D000797 ORTHO05D004867 3.0e-13 79.3 65 64.6
Manes.11G023600 Manihot esculenta HOM05D000797 ORTHO05D004867 3.0e-13 79.3 65 66.2
Potri.001G198000 Populus trichocarpa HOM05D000797 ORTHO05D004867 3.0e-13 79.3 65 63.1
Eucgr.F03161 Eucalyptus grandis HOM05D000797 ORTHO05D004867 3.9e-13 79.0 61 67.2
MD09G1188500 Malus domestica HOM05D000797 ORTHO05D004867 5.1e-13 78.6 61 67.2
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 6.7e-13 78.2 61 73.8
FAN09G2886 Fragaria x ananassa HOM05D000797 ORTHO05D004867 6.7e-13 78.2 62 66.1
Thecc.06G115500 Theobroma cacao HOM05D000797 ORTHO05D004867 6.7e-13 78.2 64 67.2
TWI79G0801 Tripterygium wilfordii HOM05D000797 ORTHO05D004867 6.7e-13 78.2 65 64.6
FAN02G2754 Fragaria x ananassa HOM05D000797 ORTHO05D004867 8.8e-13 77.8 62 66.1
FAN05G5421 Fragaria x ananassa HOM05D000797 ORTHO05D004867 8.8e-13 77.8 62 66.1
PGR031G0906 Punica granatum HOM05D000797 ORTHO05D004867 8.8e-13 77.8 62 67.7
Cfa003559 Carpinus fangiana HOM05D000797 ORTHO05D004867 1.5e-12 77.0 65 64.6
CDE05G1653 Ceratophyllum demersum HOM05D000797 ORTHO05D004867 1.5e-12 77.0 64 65.6
Duzib160G0547 Durio zibethinus HOM05D000797 ORTHO05D004867 1.5e-12 77.0 65 64.6
TWI75G1207 Tripterygium wilfordii HOM05D000797 ORTHO05D004867 1.5e-12 77.0 65 63.1
CDE05G2416 Ceratophyllum demersum HOM05D000797 ORTHO05D004867 2.0e-12 76.6 64 64.1
ClCG07G013880 Citrullus lanatus HOM05D000797 ORTHO05D004867 2.0e-12 76.6 63 66.7
Sed0018475 Sechium edule HOM05D000797 ORTHO05D004867 2.0e-12 76.6 64 65.6
Haze_15989 Corylus avellana HOM05D000797 ORTHO05D004867 2.5e-12 76.3 65 63.1
MELO3C013081.2 Cucumis melo HOM05D000797 ORTHO05D004867 3.3e-12 75.9 63 65.1
Dinv37677 Davidia involucrata HOM05D000797 ORTHO05D004867 3.3e-12 75.9 65 63.1
FvH4_6g34140 Fragaria vesca HOM05D000797 ORTHO05D004867 3.3e-12 75.9 62 64.5
FAN14G2786 Fragaria x ananassa HOM05D000797 ORTHO05D004867 3.3e-12 75.9 62 64.5
Prupe.3G045200 Prunus persica HOM05D000797 ORTHO05D004867 3.3e-12 75.9 63 63.5
CsaV3_3G043710 Cucumis sativus L. HOM05D000797 ORTHO05D004867 4.3e-12 75.5 63 63.5
Gohir.D06G200400 Gossypium hirsutum HOM05D000797 ORTHO05D004867 4.3e-12 75.5 65 61.5
Gorai.010G233900 Gossypium raimondii HOM05D000797 ORTHO05D004867 4.3e-12 75.5 65 61.5
RcHm_v2.0_Chr2g0144451 Rosa chinensis HOM05D000797 ORTHO05D004867 4.3e-12 75.5 62 64.5
MD17G1172600 Malus domestica HOM05D000797 ORTHO05D004867 5.7e-12 75.1 61 65.6
Manes.04G141800 Manihot esculenta HOM05D000797 ORTHO05D004867 5.7e-12 75.1 67 62.7
Peaxi162Scf00038g01734 Petunia axillaris HOM05D000797 ORTHO05D004867 7.4e-12 74.7 61 68.9
Sed0005451 Sechium edule HOM05D000797 ORTHO05D004867 7.4e-12 74.7 64 64.1
SEGI_18558 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 7.4e-12 74.7 57 68.4
SEGI_27289 Sequoiadendron giganteum HOM05D000797 ORTHO05D004867 7.4e-12 74.7 57 68.4
GSVIVG01016812001 Vitis vinifera HOM05D000797 ORTHO05D004867 1.3e-11 73.9 63 61.9
Actinidia32164 Actinidia chinensis HOM05D000797 ORTHO05D004867 1.7e-11 73.6 64 64.1
CiPaw.01G222600 Carya illinoinensis HOM05D000797 ORTHO05D004867 1.7e-11 73.6 65 63.1
MBI07_g31504_MAGBIO Magnolia biondii HOM05D000797 ORTHO05D004867 1.7e-11 73.6 63 66.7
SalBow6G4581 Salvia bowleyana HOM05D000797 ORTHO05D004867 1.7e-11 73.6 61 67.2
Gohir.A06G192500 Gossypium hirsutum HOM05D000797 ORTHO05D004867 2.2e-11 73.2 65 60.0
Hund02257 Selenicereus undatus HOM05D000797 ORTHO05D004867 2.2e-11 73.2 60 66.7
DCAR_026406 Daucus carota HOM05D000797 ORTHO05D004867 2.8e-11 72.8 65 64.6
Rhsim08G0088400 Rhododendron simsii HOM05D000797 ORTHO05D004867 2.8e-11 72.8 42 83.3
SalBow7G4062 Salvia bowleyana HOM05D000797 ORTHO05D004867 2.8e-11 72.8 57 68.4
QL05p009499 Quercus lobata HOM05D000797 ORTHO05D004867 3.7e-11 72.4 65 58.5
unitig_32.g11569 Utricularia gibba HOM05D000797 ORTHO05D004867 3.7e-11 72.4 41 85.4
CSS0018055 Camellia sinensis var. sinensis HOM05D000797 ORTHO05D004867 4.8e-11 72.0 59 66.1
CSS0025376 Camellia sinensis var. sinensis HOM05D000797 ORTHO05D004867 4.8e-11 72.0 59 66.1
CANSAT56G3160 Cannabis sativa HOM05D000797 ORTHO05D004867 4.8e-11 72.0 59 66.1
CiPaw.02G138200 Carya illinoinensis HOM05D000797 ORTHO05D004867 4.8e-11 72.0 65 60.0
Lj1A1031T78 Lonicera japonica HOM05D000797 ORTHO05D004867 4.8e-11 72.0 45 75.6
PSO063G5435 Papaver somniferum HOM05D000797 ORTHO05D004867 4.8e-11 72.0 61 63.9
PSO832G0660 Papaver somniferum HOM05D000797 ORTHO05D004867 4.8e-11 72.0 61 63.9
Cc04_g01660 Coffea canephora HOM05D000797 ORTHO05D004867 6.3e-11 71.6 60 68.3
Dinv01118 Davidia involucrata HOM05D000797 ORTHO05D004867 6.3e-11 71.6 65 61.5
Nn6g35540 Nelumbo nucifera HOM05D000797 ORTHO05D004867 6.3e-11 71.6 66 60.6
Nitab4.5_0000244g0270 Nicotiana tabacum HOM05D000797 ORTHO05D004867 6.3e-11 71.6 58 70.7
vmacro19539 Vaccinium macrocarpon HOM05D000797 ORTHO05D004867 6.3e-11 71.6 42 83.3
Actinidia21778 Actinidia chinensis HOM05D000797 ORTHO05D004867 8.2e-11 71.2 62 64.5
Cpa.g.sc3.118 Carica papaya HOM05D000797 ORTHO05D004867 8.2e-11 71.2 55 65.5
Ca_23350_v3 Cicer arietinum L. HOM05D000797 ORTHO05D004867 8.2e-11 71.2 72 55.6
CAN.G584.10 Capsicum annuum HOM05D000797 ORTHO05D004867 1.1e-10 70.9 58 69.0
Migut.I01049 Erythranthe guttata HOM05D000797 ORTHO05D004867 1.1e-10 70.9 41 85.4
Hma1.2p1_0291F.1_g115440 Hydrangea macrophylla HOM05D000797 ORTHO05D004867 1.1e-10 70.9 62 64.5
Nitab4.5_0000937g0020 Nicotiana tabacum HOM05D000797 ORTHO05D004867 1.1e-10 70.9 58 70.7
Os06g0105400 Oryza sativa ssp. japonica HOM05D000797 ORTHO05D004867 1.1e-10 70.9 57 63.2
Sc10g0007840 Simmondsia chinensis HOM05D000797 ORTHO05D004867 1.1e-10 70.9 60 63.3
Zm00001eb205190 Zea mays HOM05D000797 ORTHO05D004867 1.1e-10 70.9 52 67.3
MSTRG.22564 Avicennia marina HOM05D000797 ORTHO05D004867 1.4e-10 70.5 61 65.6
MBI07_g17485_MAGBIO Magnolia biondii HOM05D000797 ORTHO05D004867 1.4e-10 70.5 66 60.6
TAR383G0108 Trochodendron aralioides HOM05D000797 ORTHO05D004867 1.4e-10 70.5 66 57.6
TAR626G1502 Trochodendron aralioides HOM05D000797 ORTHO05D004867 1.4e-10 70.5 66 57.6
Aqoxy7G01150 Aquilegia oxysepala HOM05D000797 ORTHO05D004867 1.8e-10 70.1 65 56.9
Glyma.16G004400 Glycine max HOM05D000797 ORTHO05D004867 2.4e-10 69.7 64 59.4
Nitab4.5_0009641g0070 Nicotiana tabacum HOM05D000797 ORTHO05D004867 2.4e-10 69.7 58 69.0
Phvul.010G134600 Phaseolus vulgaris HOM05D000797 ORTHO05D004867 2.4e-10 69.7 64 60.9
Psat4g184720 Pisum sativum HOM05D000797 ORTHO05D004867 2.4e-10 69.7 65 56.9
EL10Ac1g00928 Beta vulgaris HOM05D000797 ORTHO05D004867 3.1e-10 69.3 62 62.9
Lsat_1_v5_gn_5_135560 Lactuca sativa HOM05D000797 ORTHO05D004867 3.1e-10 69.3 66 57.6
Oeu027299.1 Olea europaea HOM05D000797 ORTHO05D004867 4.1e-10 68.9 61 63.9
VMungo0331G1654 Vigna mungo HOM05D000797 ORTHO05D004867 4.1e-10 68.9 65 61.5
DCAR_007637 Daucus carota HOM05D000797 ORTHO05D004867 5.3e-10 68.6 62 61.3
ECA234G2323 Erigeron canadensis HOM05D000797 ORTHO05D004867 5.3e-10 68.6 56 62.5
Lj3g0024966 Lotus japonicus HOM05D000797 ORTHO05D004867 5.3e-10 68.6 72 54.2
Nitab4.5_0005003g0050 Nicotiana tabacum HOM05D000797 ORTHO05D004867 5.3e-10 68.6 58 67.2
Os07g0410100 Oryza sativa ssp. japonica HOM05D000797 ORTHO05D004867 5.3e-10 68.6 64 54.7
Zm00001eb240130 Zea mays HOM05D000797 ORTHO05D004867 5.3e-10 68.6 57 63.2
Cpa.g.sc106.32 Carica papaya HOM05D000797 ORTHO05D004867 6.9e-10 68.2 61 62.3
Migut.D00952 Erythranthe guttata HOM05D000797 ORTHO05D004867 6.9e-10 68.2 61 57.4
Glyma.07G035000 Glycine max HOM05D000797 ORTHO05D004867 6.9e-10 68.2 64 57.8
Lalb_Chr25g0280931 Lupinus albus HOM05D000797 ORTHO05D004867 6.9e-10 68.2 74 55.4
Solyc07g006790.3 Solanum lycopersicum HOM05D000797 ORTHO05D004867 6.9e-10 68.2 58 67.2
Sopen07g002890 Solanum pennellii HOM05D000797 ORTHO05D004867 6.9e-10 68.2 58 67.2
arahy.Tifrunner.gnm1.ann1.3W4LSS Arachis hypogaea HOM05D000797 ORTHO05D004867 9.1e-10 67.8 72 51.4
arahy.Tifrunner.gnm1.ann1.9KBG8L Arachis hypogaea HOM05D000797 ORTHO05D004867 9.1e-10 67.8 72 51.4
Medtr8g018770 Medicago truncatula HOM05D000797 ORTHO05D004867 9.1e-10 67.8 72 52.8
ATR0127G012 Amborella trichopoda HOM05D000797 ORTHO05D004867 1.2e-09 67.4 42 81.0
Os02g0105200 Oryza sativa ssp. japonica HOM05D000797 ORTHO05D004867 1.2e-09 67.4 78 48.7
PGSC0003DMG400018735 Solanum tuberosum HOM05D000797 ORTHO05D004867 1.2e-09 67.4 58 65.5
TPR.G28499 Trifolium pratense HOM05D000797 ORTHO05D004867 1.2e-09 67.4 72 52.8
HPP92_018670 Vanilla planifolia HOM05D000797 ORTHO05D004867 1.5e-09 67.0 42 78.6
HanXRQChr10g0312371 Helianthus annuus HOM05D000797 ORTHO05D004867 2.0e-09 66.6 41 78.0
HPP92_018688 Vanilla planifolia HOM05D000797 ORTHO05D004867 2.6e-09 66.2 42 78.6
Lalb_Chr04g0263301 Lupinus albus HOM05D000797 ORTHO05D004867 3.4e-09 65.9 72 50.0
PSO170G2583 Papaver somniferum HOM05D000797 ORTHO05D004867 3.4e-09 65.9 66 54.5
Pp3c9_17180 Physcomitrium patens HOM05D000797 ORTHO05D004867 5.9e-09 65.1 57 52.6
Ah.05g175300 Amaranthus hybridus HOM05D000797 ORTHO05D004867 7.7e-09 64.7 64 59.4
Lj9A521G32 Lonicera japonica HOM05D000797 ORTHO05D004867 7.7e-09 64.7 40 77.5
VMungo1080G1278 Vigna mungo HOM05D000797 ORTHO05D004867 1.0e-08 64.3 66 57.6
BolC8t48064H Brassica oleracea HOM05D000353 ORTHO05D033592 1.3e-08 63.9 46 63.0
CBR_g54237 Chara braunii HOM05D000797 ORTHO05D004867 1.3e-08 63.9 38 73.7
SMO114G0149 Selaginella moellendorffii HOM05D000797 ORTHO05D004867 1.3e-08 63.9 56 53.6
SGA_v2.0_scaffold122G33357 Striga asiatica HOM05D000797 ORTHO05D004867 1.3e-08 63.9 78 53.8
A08p10030 Brassica napus HOM05D000353 ORTHO05D033592 1.7e-08 63.5 46 63.0
BraA08t32999Z Brassica rapa HOM05D000353 ORTHO05D033592 2.2e-08 63.2 46 63.0
MBI01_g16593_MAGBIO Magnolia biondii HOM05D002706 ORTHO05D003253 2.2e-08 63.2 63 57.1
MBI18_g35143_MAGBIO Magnolia biondii HOM05D000797 ORTHO05D021638 2.2e-08 63.2 74 54.1
BolC3t15617H Brassica oleracea HOM05D000353 ORTHO05D027041 3.8e-08 62.4 63 47.6
BraA02t07832Z Brassica rapa HOM05D000353 ORTHO05D027349 5.0e-08 62.0 58 51.7
C03p32830 Brassica napus HOM05D000353 ORTHO05D027041 8.5e-08 61.2 63 46.0
MBI04_g25407_MAGBIO Magnolia biondii HOM05D000797 ORTHO05D021638 8.5e-08 61.2 71 54.9
Mapoly0014s0063 Marchantia polymorpha HOM05D000797 ORTHO05D004867 1.4e-07 60.5 56 53.6
PRCOL_00005279 Prasinoderma coloniale HOM05D000797 ORTHO05D004867 1.4e-07 60.5 65 43.1
Cre09.g386735 Chlamydomonas reinhardtii HOM05D000797 ORTHO05D004867 2.5e-07 59.7 42 61.9
BcaC08g43066 Brassica carinata HOM05D000353 ORTHO05D027041 9.4e-07 57.8 61 45.9
Oeu004350.1 Olea europaea HOM05D000797 ORTHO05D004867 9.4e-07 57.8 61 55.7
BcaB02g07102 Brassica carinata HOM05D000471 ORTHO05D000199 1.2e-06 57.4 92 44.6
BcaC01g04869 Brassica carinata HOM05D000353 ORTHO05D027041 1.2e-06 57.4 52 51.9
BcaB06g28039 Brassica carinata HOM05D000703 ORTHO05D000633 1.6e-06 57.0 43 60.5
BcaB04g18446 Brassica carinata HOM05D000471 ORTHO05D013512 2.7e-06 56.2 45 66.7
Sed0000215 Sechium edule HOM05D000797 ORTHO05D007935 2.7e-06 56.2 77 44.2


User provided reference genes

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