Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 5.7e-36 153.7 75 100.0
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 7.7e-25 116.7 79 75.9
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 7.7e-25 116.7 79 75.9
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 8.5e-24 113.2 79 74.7
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.5e-23 111.7 73 71.2
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 5.5e-23 110.5 72 72.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 5.5e-23 110.5 72 72.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 5.5e-23 110.5 72 72.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 5.5e-23 110.5 72 72.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 5.5e-23 110.5 72 72.2
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.9e-21 104.4 76 64.5
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 8.8e-21 103.2 73 67.1
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-20 102.4 73 67.1
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.5e-20 102.4 76 61.8
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.0e-20 102.1 76 63.2
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 2.6e-20 101.7 72 69.4
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 5.7e-20 100.5 76 63.2
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 7.4e-20 100.1 73 65.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-19 99.0 71 64.8
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.7e-19 99.0 71 64.8
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 6.3e-19 97.1 73 65.8
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 7.7e-17 90.1 76 59.2
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 4.7e-14 80.9 72 54.2
BraA05t20644Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-12 76.3 56 71.4
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-10 68.9 74 51.4
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 1.8e-10 68.9 74 51.4
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.4e-10 68.6 63 50.8
Sp3g11710 Schrenkiella parvula HOM05D004137 ORTHO05D004804 4.5e-09 64.3 57 56.1
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.7e-08 62.4 72 44.4
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 5.0e-08 60.8 69 46.4
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 6.5e-08 60.5 70 44.3
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 8.5e-08 60.1 69 43.5
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.5e-08 60.1 56 51.8
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.9e-07 58.9 72 38.9
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.5e-07 58.5 66 43.9
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.5e-07 58.5 73 39.7
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.2e-07 58.2 62 46.8
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.2e-07 57.8 68 45.6
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 4.2e-07 57.8 69 43.5
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.5e-07 57.4 69 42.0
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.5e-07 57.4 69 42.0
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 5.5e-07 57.4 72 37.5
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 5.5e-07 57.4 66 42.4
AT3G13500 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 9.4e-07 56.6 62 46.8
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 9.4e-07 56.6 68 38.2
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-06 56.2 74 44.6
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.6e-06 55.8 64 45.3
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-06 55.1 69 40.6
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 2.7e-06 55.1 64 39.1
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.6e-06 54.7 74 36.5
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 4.7e-06 54.3 67 38.8
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 6.1e-06 53.9 63 41.3
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.1e-06 53.9 63 42.9
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 6.1e-06 53.9 70 41.4
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 8.0e-06 53.5 63 39.7
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 8.0e-06 53.5 68 45.6


User provided reference genes

Program Settings