Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 6.1e-83 310.8 164 100.0
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 2.6e-78 295.4 164 97.6
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 2.6e-78 295.4 164 97.6
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 2.6e-78 295.4 164 97.6
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 2.6e-78 295.4 164 97.6
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 5.9e-78 294.3 164 97.0
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 1.1e-76 290.0 164 94.5
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 9.4e-76 287.0 165 93.3
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 1.2e-75 286.6 165 95.2
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 1.2e-75 286.6 165 95.2
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 1.2e-75 286.6 165 95.2
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 1.6e-75 286.2 165 95.2
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 1.6e-75 286.2 165 95.2
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 3.6e-75 285.0 165 94.5
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.0e-74 283.5 165 93.9
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 1.0e-74 283.5 164 94.5
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.0e-74 283.5 165 93.9
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 1.0e-74 283.5 164 94.5
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 3.9e-74 281.6 165 91.5
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 8.8e-74 280.4 166 92.8
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 3.3e-73 278.5 165 92.1
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 3.3e-73 278.5 165 92.1
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.8e-71 272.7 165 89.1
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 3.6e-67 258.5 165 85.5
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.3e-66 255.8 165 85.5
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.3e-64 250.0 165 81.8
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 2.7e-59 232.3 166 77.1
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 7.5e-57 224.2 167 76.0
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.3e-56 223.4 164 77.4
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 8.6e-53 210.7 166 71.7
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 1.1e-52 210.3 165 77.0
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 1.5e-52 209.9 162 72.2
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.5e-52 209.9 165 72.1
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.9e-52 209.5 162 72.2
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 4.2e-52 208.4 166 71.7
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 5.5e-52 208.0 167 67.7
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.6e-51 206.5 165 71.5
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 2.1e-51 206.1 155 72.3
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 2.8e-51 205.7 161 71.4
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.8e-51 205.7 166 71.1
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 2.8e-51 205.7 163 72.4
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 3.6e-51 205.3 162 71.6
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 4.7e-51 204.9 163 71.8
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.7e-51 204.9 163 72.4
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 4.7e-51 204.9 163 73.0
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 6.1e-51 204.5 168 70.2
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 6.1e-51 204.5 167 69.5
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 6.1e-51 204.5 166 71.1
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 6.1e-51 204.5 166 70.5
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 8.0e-51 204.1 169 69.8
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 8.0e-51 204.1 164 70.1
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 8.0e-51 204.1 169 71.0
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 8.0e-51 204.1 140 80.0
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 8.0e-51 204.1 165 69.7
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 1.0e-50 203.8 163 71.8
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 1.0e-50 203.8 163 71.8
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.4e-50 203.4 162 70.4
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 1.4e-50 203.4 167 69.5
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.4e-50 203.4 163 71.2
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 1.8e-50 203.0 163 71.8
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 1.8e-50 203.0 163 71.8
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.8e-50 203.0 169 69.2
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 3.0e-50 202.2 168 66.7
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 4.0e-50 201.8 166 69.9
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 5.2e-50 201.4 168 67.3
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 5.2e-50 201.4 169 67.5
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 6.8e-50 201.1 162 68.5
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 6.8e-50 201.1 165 66.1
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 8.9e-50 200.7 142 76.8
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 8.9e-50 200.7 170 67.1
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.2e-49 200.3 163 68.7
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.2e-49 200.3 135 76.3
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 2.0e-49 199.5 140 75.7
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 3.4e-49 198.7 169 67.5
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 4.4e-49 198.4 166 68.7
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 5.7e-49 198.0 164 68.9
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 7.5e-49 197.6 163 66.9
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 1.3e-48 196.8 168 66.1
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.3e-48 196.8 138 75.4
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.7e-48 196.4 163 66.3
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 1.7e-48 196.4 160 68.1
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.7e-48 196.4 138 74.6
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 2.2e-48 196.1 138 75.4
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 3.7e-48 195.3 141 75.9
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 6.3e-48 194.5 139 76.3
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 8.3e-48 194.1 156 69.9
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.8e-47 193.0 154 69.5
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.4e-47 192.6 166 68.7
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 2.4e-47 192.6 139 74.1
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 3.1e-47 192.2 100 94.0
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 5.4e-47 191.4 100 92.0
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 5.4e-47 191.4 100 92.0
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 7.0e-47 191.0 138 72.5
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.2e-46 190.3 166 68.7
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 1.2e-46 190.3 136 72.8
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.2e-46 190.3 149 67.8
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 1.6e-46 189.9 138 74.6
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 2.0e-46 189.5 138 73.9
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 2.7e-46 189.1 146 70.5
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.5e-46 188.7 158 69.6
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.5e-46 188.7 143 72.7
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 7.8e-46 187.6 144 72.2
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.0e-45 187.2 143 72.0
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.7e-45 186.4 165 64.8
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 2.9e-45 185.7 108 84.3
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 3.8e-45 185.3 127 78.0
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.0e-45 184.9 143 71.3
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 5.0e-45 184.9 162 63.6
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 6.6e-45 184.5 166 65.1
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 8.6e-45 184.1 155 64.5
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 1.1e-44 183.7 100 86.0
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 1.5e-41 173.3 169 60.4
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 9.2e-39 164.1 140 65.0
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 3.0e-37 159.1 79 94.9
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 9.5e-36 154.1 131 67.2
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 2.1e-35 152.9 169 57.4
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 3.2e-31 139.0 97 68.0
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 4.6e-30 135.2 94 71.3
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 7.8e-30 134.4 147 49.7
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 6.6e-29 131.3 135 51.1
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 4.7e-27 125.2 162 45.7
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.3e-26 122.9 161 47.2
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 1.1e-23 114.0 72 77.8
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 8.1e-19 97.8 51 94.1
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 8.1e-19 97.8 51 94.1
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 8.1e-19 97.8 52 92.3
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 6.8e-18 94.7 90 52.2
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 8.9e-18 94.4 106 51.9
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 6.4e-16 88.2 101 50.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 1.2e-11 73.9 119 38.7


User provided reference genes

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