Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10776 Brassica carinata HOM05D014245 ORTHO05D010083 5.0e-51 204.1 103 100.0
A06p26690 Brassica napus HOM05D014245 ORTHO05D010083 2.5e-42 175.3 103 86.4
BcaC01g02219 Brassica carinata HOM05D014245 ORTHO05D010083 5.2e-32 141.0 85 83.5
Thhalv10005172m.g Eutrema salsugineum HOM05D014245 ORTHO05D010083 1.2e-31 139.8 107 73.8
BolSC21t60232H Brassica oleracea HOM05D014245 ORTHO05D010083 1.5e-31 139.4 84 83.3
C03p67730 Brassica napus HOM05D014245 ORTHO05D010083 9.9e-31 136.7 79 87.3
Sp2g30460 Schrenkiella parvula HOM05D014245 ORTHO05D010083 8.3e-30 133.7 106 69.8
CARHR281490 Cardamine hirsuta HOM05D014245 ORTHO05D010083 7.8e-28 127.1 98 70.4
Carub.0008s2826 Capsella rubella HOM05D014245 ORTHO05D010083 1.8e-24 115.9 97 69.1
AL8G45290 Arabidopsis lyrata HOM05D014245 ORTHO05D010083 3.1e-24 115.2 94 67.0
Glyma.11G076300 Glycine max HOM05D008224 ORTHO05D010083 1.6e-12 76.3 90 46.7
Ca_25829_v3 Cicer arietinum L. HOM05D008224 ORTHO05D010083 4.6e-12 74.7 94 42.6
Glyma.01G166900 Glycine max HOM05D008224 ORTHO05D010083 1.0e-11 73.6 90 46.7
Lalb_Chr09g0321801 Lupinus albus HOM05D008224 ORTHO05D010083 1.0e-11 73.6 99 44.4
Medtr5g021840 Medicago truncatula HOM05D008224 ORTHO05D010083 3.0e-11 72.0 94 42.6
FvH4_1g11880 Fragaria vesca HOM05D008224 ORTHO05D010083 5.1e-11 71.2 83 50.6
FAN19G0355 Fragaria x ananassa HOM05D008224 ORTHO05D010083 5.1e-11 71.2 83 50.6
Solyc02g083930.1 Solanum lycopersicum HOM05D008224 ORTHO05D010083 5.1e-11 71.2 94 45.7
CiPaw.08G131800 Carya illinoinensis HOM05D008224 ORTHO05D010083 1.1e-10 70.1 98 40.8
Manes.02G104200 Manihot esculenta HOM05D008224 ORTHO05D010083 1.5e-10 69.7 91 42.9
Gohir.A10G098400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.9e-10 69.3 98 40.8
Gohir.D10G089800 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.9e-10 69.3 98 40.8
Gorai.011G098500 Gossypium raimondii HOM05D008224 ORTHO05D010083 1.9e-10 69.3 98 40.8
Sopen02g028710 Solanum pennellii HOM05D008224 ORTHO05D010083 1.9e-10 69.3 94 44.7
COL.COLO4_21914 Corchorus olitorius HOM05D008224 ORTHO05D010083 3.3e-10 68.6 87 46.0
PGSC0003DMG400003638 Solanum tuberosum HOM05D008224 ORTHO05D010083 4.3e-10 68.2 90 43.3
Thecc.01G019300 Theobroma cacao HOM05D008224 ORTHO05D010083 5.6e-10 67.8 97 44.3
Potri.005G114500 Populus trichocarpa HOM05D008224 ORTHO05D010083 7.3e-10 67.4 101 38.6
Phvul.002G109500 Phaseolus vulgaris HOM05D008224 ORTHO05D010083 9.6e-10 67.0 90 44.4
Prupe.7G167900 Prunus persica HOM05D008224 ORTHO05D010083 1.3e-09 66.6 83 45.8
Nn5g30159 Nelumbo nucifera HOM05D008224 ORTHO05D010083 1.6e-09 66.2 90 37.8
QL06p032684 Quercus lobata HOM05D008224 ORTHO05D010083 2.1e-09 65.9 88 42.0
Sabra05G0093700 Salix brachista HOM05D008224 ORTHO05D010083 2.1e-09 65.9 99 38.4
FAN26G2375 Fragaria x ananassa HOM05D011822 ORTHO05D010083 2.8e-09 65.5 65 55.4
Psat2g155040 Pisum sativum HOM05D008224 ORTHO05D010083 2.8e-09 65.5 94 42.6
TPR.G18188 Trifolium pratense HOM05D008224 ORTHO05D010083 3.6e-09 65.1 84 45.2
QL12p007153 Quercus lobata HOM05D008224 ORTHO05D010083 4.8e-09 64.7 88 42.0
Aqoxy5G01777 Aquilegia oxysepala HOM05D008224 ORTHO05D010083 1.1e-08 63.5 94 36.2
Cc07_g10680 Coffea canephora HOM05D008224 ORTHO05D010083 1.1e-08 63.5 86 44.2
Lj4P218T44 Lonicera japonica HOM05D008224 ORTHO05D010083 1.4e-08 63.2 98 41.8
Nitab4.5_0003271g0030 Nicotiana tabacum HOM05D008224 ORTHO05D010083 1.8e-08 62.8 68 47.1
TAR381G1028 Trochodendron aralioides HOM05D008224 ORTHO05D010083 1.8e-08 62.8 90 41.1
Gohir.D11G183450 Gossypium hirsutum HOM05D008224 ORTHO05D010083 2.4e-08 62.4 104 38.5
Ciclev10027456m.g Citrus clementina HOM05D008224 ORTHO05D010083 3.1e-08 62.0 101 38.6
Peaxi162Scf00083g00052 Petunia axillaris HOM05D008224 ORTHO05D010083 4.0e-08 61.6 92 40.2
Hma1.2p1_0956F.1_g241380 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 5.3e-08 61.2 85 42.4
Hma1.2p1_2239F.1_g317816 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 5.3e-08 61.2 85 42.4
Nn1g05883 Nelumbo nucifera HOM05D008224 ORTHO05D010083 6.9e-08 60.8 94 40.4
Oeu064592.1 Olea europaea HOM05D008224 ORTHO05D010083 6.9e-08 60.8 88 43.2
Haze_03767 Corylus avellana HOM05D008224 ORTHO05D010083 1.2e-07 60.1 84 42.9
TAR625G0799 Trochodendron aralioides HOM05D008224 ORTHO05D010083 1.2e-07 60.1 96 37.5
Nitab4.5_0006286g0060 Nicotiana tabacum HOM05D008224 ORTHO05D010083 1.5e-07 59.7 68 48.5
Atru.chr4.381 Acer truncatum HOM05D008224 ORTHO05D010083 4.5e-07 58.2 96 39.6
Gohir.A11G175668 Gossypium hirsutum HOM05D008224 ORTHO05D010083 7.6e-07 57.4 106 36.8
Gorai.007G195300 Gossypium raimondii HOM05D008224 ORTHO05D010083 9.9e-07 57.0 108 36.1
Hma1.2p1_0258F.1_g104170 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 9.9e-07 57.0 62 51.6
ATR0627G002 Amborella trichopoda HOM05D008224 ORTHO05D010083 1.3e-06 56.6 88 34.1
DCAR_016610 Daucus carota HOM05D008224 ORTHO05D010083 2.9e-06 55.5 72 44.4
Actinidia28703 Actinidia chinensis HOM05D008224 ORTHO05D010083 3.8e-06 55.1 99 38.4
CsaV3_6G047070 Cucumis sativus L. HOM05D008224 ORTHO05D010083 4.9e-06 54.7 75 42.7
Sed0025479 Sechium edule HOM05D008224 ORTHO05D010083 6.4e-06 54.3 78 41.0
CSS0002084 Camellia sinensis var. sinensis HOM05D008224 ORTHO05D010083 8.4e-06 53.9 94 38.3


User provided reference genes

Program Settings