Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 0.0e+00 1438.3 720 100.0
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 0.0e+00 1373.6 722 95.0
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 0.0e+00 1365.1 722 94.7
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 0.0e+00 1365.1 722 94.7
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 0.0e+00 1358.2 726 93.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 0.0e+00 1312.0 737 90.4
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 0.0e+00 1229.9 732 85.4
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 0.0e+00 1225.3 726 85.8
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 0.0e+00 1218.4 724 84.7
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 0.0e+00 1203.0 726 83.5
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 8.3e-310 1066.6 730 74.5
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.2e-296 1020.8 606 84.3
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 2.5e-290 1001.9 736 69.6
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 5.1e-267 924.5 708 65.4
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 5.6e-266 921.0 725 64.6
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 8.1e-265 917.1 726 64.0
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 7.9e-260 900.6 725 62.3
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 3.9e-259 898.3 709 63.0
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 3.9e-259 898.3 725 63.6
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 5.1e-259 897.9 709 64.9
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.1e-258 896.7 725 62.2
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 7.4e-258 894.0 720 62.1
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 5.3e-256 887.9 720 62.4
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 2.2e-254 882.5 713 62.4
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.0e-251 873.6 728 60.2
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 1.3e-251 873.2 715 62.4
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 1.5e-250 869.8 725 61.9
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.8e-249 865.5 731 60.5
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 6.3e-249 864.4 731 60.5
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 1.8e-248 862.8 712 61.7
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 6.9e-248 860.9 709 61.6
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 9.0e-248 860.5 709 60.8
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.5e-247 859.8 709 61.5
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 2.0e-247 859.4 725 60.8
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 4.5e-247 858.2 713 61.0
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 5.9e-247 857.8 730 60.3
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.6e-247 857.4 709 61.5
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.3e-246 856.7 709 59.8
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 1.7e-246 856.3 710 61.1
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.8e-246 855.1 709 61.4
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 8.5e-246 854.0 710 61.3
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 8.5e-246 854.0 710 61.3
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.5e-246 854.0 706 61.5
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 3.2e-245 852.0 720 60.1
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 5.5e-245 851.3 682 62.3
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 1.6e-244 849.7 711 60.8
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 1.8e-243 846.3 710 60.8
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 2.3e-243 845.9 713 60.2
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 3.0e-243 845.5 709 61.1
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 6.7e-243 844.3 709 60.1
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 2.5e-242 842.4 708 59.9
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 2.5e-242 842.4 713 60.6
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 2.8e-241 839.0 713 59.3
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 4.8e-241 838.2 731 58.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 4.8e-241 838.2 713 60.4
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 1.1e-240 837.0 753 58.2
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.4e-240 836.6 713 59.9
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 1.4e-240 836.6 708 60.0
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 3.1e-240 835.5 713 60.2
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 3.8e-238 828.6 709 59.5
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 5.0e-238 828.2 712 59.3
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 8.5e-238 827.4 712 58.8
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 4.2e-237 825.1 481 85.7
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 7.2e-237 824.3 710 58.7
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 2.7e-236 822.4 710 58.7
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.8e-235 819.7 694 59.9
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 2.3e-235 819.3 732 58.6
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 3.9e-235 818.5 714 58.3
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 4.8e-233 811.6 710 57.7
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 9.1e-232 807.4 765 55.0
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 4.5e-231 805.1 711 58.2
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 4.5e-231 805.1 713 57.8
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 7.7e-231 804.3 714 56.7
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 7.7e-231 804.3 722 57.5
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 9.4e-229 797.3 731 57.9
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 1.1e-226 790.4 714 56.9
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 5.7e-226 788.1 725 56.6
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.6e-223 780.0 715 56.2
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 3.8e-222 775.4 712 56.5
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 6.5e-222 774.6 689 57.6
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.2e-212 743.8 709 54.6
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 1.4e-211 740.3 839 49.1
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.8e-211 740.0 535 67.3
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 6.8e-211 738.0 583 63.6
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 9.5e-205 717.6 727 53.6
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 5.2e-203 711.8 604 59.6
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 8.3e-201 704.5 662 55.3
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 8.3e-201 704.5 721 52.8
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.1e-200 702.6 620 57.6
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 9.2e-200 701.0 710 53.7
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 1.1e-184 651.0 741 49.5
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 8.3e-177 624.8 720 47.5
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.0e-166 591.3 624 48.7
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.8e-164 583.2 441 65.3
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 3.5e-159 566.2 444 63.1
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 1.5e-154 550.8 446 59.4
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 1.4e-152 544.3 742 42.5
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.6e-151 540.8 734 41.8
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.3e-150 537.0 475 57.1
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.1e-144 518.1 403 64.5
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 3.0e-142 510.0 429 63.6
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.9e-141 507.3 478 54.8
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 5.8e-138 495.7 412 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 2.7e-135 486.9 695 41.0
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 5.5e-128 462.6 404 59.9
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 7.2e-120 435.6 747 38.0
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.2e-119 434.9 480 49.2
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 6.5e-113 412.5 682 38.6
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 7.2e-112 409.1 737 35.8
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.3e-101 373.6 293 65.9
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.7e-100 371.3 380 53.9
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 5.3e-99 366.3 381 51.7
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 3.1e-83 313.9 311 53.7
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 4.9e-76 290.0 317 47.9
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.9e-75 288.1 186 74.7
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.9e-72 278.1 206 67.5
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.1e-54 219.2 237 48.5
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 1.4e-38 165.6 108 75.0
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.3e-38 163.7 314 33.4
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.8e-36 157.5 142 62.0
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.8e-33 148.7 94 73.4
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 6.7e-33 146.7 150 52.0
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.7e-28 132.1 152 49.3
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 6.0e-26 123.6 820 22.3
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 3.0e-25 121.3 539 25.4
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.4e-24 116.7 268 30.6
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.0e-22 110.9 161 40.4
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 5.8e-21 107.1 113 45.1
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 9.3e-19 99.8 124 45.2
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 2.7e-18 98.2 64 68.8
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-17 95.5 82 57.3
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-16 92.8 84 57.1
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 5.7e-16 90.5 115 53.0
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 3.7e-15 87.8 66 71.2
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.2e-13 82.8 111 49.5
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.2e-13 82.8 118 43.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.5e-13 82.4 74 56.8
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.2e-12 78.6 64 64.1
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.9e-11 75.5 51 66.7
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 4.6e-10 70.9 45 73.3
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 7.9e-10 70.1 54 70.4
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.8e-09 68.9 56 67.9


User provided reference genes

Program Settings