Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 9.1e-127 456.8 217 100.0
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 4.7e-123 444.5 217 97.2
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 6.1e-123 444.1 217 96.8
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 7.9e-123 443.7 217 96.8
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 3.9e-122 441.4 217 96.3
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 6.7e-122 440.7 217 96.8
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 6.3e-120 434.1 232 90.5
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 1.1e-119 433.3 232 90.5
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 2.2e-117 425.6 217 92.6
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 3.8e-117 424.9 217 92.2
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 7.5e-113 410.6 217 89.9
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 1.7e-112 409.5 215 90.7
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 2.8e-112 408.7 217 89.9
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 1.1e-111 406.8 217 88.5
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 1.1e-100 370.2 222 79.3
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 2.0e-94 349.4 216 76.9
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 2.3e-90 335.9 221 71.5
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.5e-89 333.2 221 71.5
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 4.4e-89 331.6 223 71.7
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 1.7e-88 329.7 221 68.8
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 3.7e-88 328.6 221 70.6
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 4.9e-88 328.2 217 69.6
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 4.9e-88 328.2 221 70.1
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 6.4e-88 327.8 220 69.5
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.4e-87 326.6 221 70.6
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 2.4e-87 325.9 221 70.1
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 5.4e-87 324.7 221 67.9
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 5.4e-87 324.7 221 68.3
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 5.4e-87 324.7 221 68.3
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 7.0e-87 324.3 221 67.0
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 7.0e-87 324.3 223 68.2
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 1.2e-86 323.6 223 68.6
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 1.6e-86 323.2 221 69.2
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 2.0e-86 322.8 221 66.1
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 2.0e-86 322.8 221 70.1
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 2.7e-86 322.4 221 67.0
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 2.7e-86 322.4 221 67.9
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 2.7e-86 322.4 221 67.4
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 3.5e-86 322.0 220 68.2
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 4.6e-86 321.6 221 66.5
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 5.9e-86 321.2 221 67.4
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 5.9e-86 321.2 223 68.2
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 1.0e-85 320.5 221 66.5
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.0e-85 320.5 221 67.0
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 1.3e-85 320.1 220 68.2
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 1.7e-85 319.7 222 67.1
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 1.7e-85 319.7 220 67.7
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 1.7e-85 319.7 221 69.7
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 1.7e-85 319.7 220 68.2
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 5.0e-85 318.2 216 69.9
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 6.6e-85 317.8 221 68.8
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 8.6e-85 317.4 221 67.0
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 8.6e-85 317.4 220 68.2
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 8.6e-85 317.4 218 67.4
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 8.6e-85 317.4 221 67.4
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 1.1e-84 317.0 221 66.1
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 1.1e-84 317.0 221 67.9
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 1.5e-84 316.6 221 66.5
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 1.5e-84 316.6 222 67.1
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 1.5e-84 316.6 221 69.2
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 1.9e-84 316.2 223 66.8
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 2.5e-84 315.8 220 66.8
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 5.6e-84 314.7 223 66.4
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 7.3e-84 314.3 218 66.5
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 9.5e-84 313.9 223 65.5
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 4.7e-83 311.6 222 66.7
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 6.2e-83 311.2 221 65.2
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 6.2e-83 311.2 221 65.2
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 6.2e-83 311.2 221 64.3
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 1.4e-82 310.1 221 67.0
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 2.3e-82 309.3 220 66.4
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 3.1e-82 308.9 221 62.9
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 3.1e-82 308.9 221 65.6
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 4.0e-82 308.5 221 63.3
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 4.0e-82 308.5 221 65.6
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 4.0e-82 308.5 223 64.6
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 5.2e-82 308.1 221 65.2
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 6.8e-82 307.8 221 64.7
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 8.9e-82 307.4 221 66.5
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 2.0e-81 306.2 229 61.6
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 2.6e-81 305.8 223 64.6
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 4.9e-80 301.6 223 64.1
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 6.4e-80 301.2 235 60.4
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 6.4e-80 301.2 247 59.5
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 8.3e-80 300.8 230 62.2
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 8.3e-80 300.8 221 62.0
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 5.4e-79 298.1 221 62.4
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 9.2e-79 297.4 225 64.4
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 9.2e-79 297.4 223 63.2
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 1.6e-78 296.6 214 67.3
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 1.6e-78 296.6 219 61.6
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 3.5e-78 295.4 223 62.3
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 6.0e-78 294.7 213 65.3
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 3.0e-77 292.4 214 64.0
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.2e-75 287.0 215 64.2
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.1e-74 283.9 301 48.8
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 1.1e-74 283.9 221 59.7
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 1.5e-73 280.0 221 60.6
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 2.6e-73 279.3 223 56.5
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 4.1e-71 271.9 221 57.5
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 3.3e-68 262.3 221 59.7
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 4.7e-67 258.5 222 54.5
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 3.4e-65 252.3 220 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 7.6e-65 251.1 216 53.7
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 6.4e-64 248.1 215 52.1
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 3.2e-63 245.7 215 50.7
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 2.1e-62 243.0 215 52.1
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 1.1e-60 237.3 171 66.7
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 4.3e-60 235.3 218 45.4
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 7.3e-60 234.6 215 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.9e-53 212.2 218 47.7
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 2.5e-52 209.5 219 47.0
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 2.3e-45 186.4 87 94.3
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 1.3e-43 180.6 217 43.8
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 3.6e-43 179.1 107 72.9
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 5.8e-41 171.8 213 39.9
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 1.4e-39 167.2 134 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 9.3e-39 164.5 211 39.3
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 4.8e-35 152.1 89 71.9
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 4.0e-34 149.1 118 62.7
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 3.8e-32 142.5 109 65.1
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 4.9e-32 142.1 184 44.6
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 3.0e-29 132.9 95 63.2
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 6.3e-27 125.2 75 69.3
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 2.6e-25 119.8 74 68.9
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 5.0e-24 115.5 104 57.7
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 2.5e-23 113.2 74 66.2
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 1.1e-18 97.8 176 29.5
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 2.4e-18 96.7 174 29.9
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 4.5e-17 92.4 217 33.6
CBR_g34275 Chara braunii HOM05D003127 ORTHO05D003709 3.8e-16 89.4 177 29.9
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 3.2e-15 86.3 62 67.7
PRCOL_00005818 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 8.8e-13 78.2 169 29.0
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.7e-11 73.9 154 29.9
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 1.1e-07 61.2 39 59.0
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 7.9e-06 55.1 156 23.7
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 7.9e-06 55.1 125 24.8
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 7.9e-06 55.1 125 24.8
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 7.9e-06 55.1 125 24.8


User provided reference genes

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