Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10698 Brassica carinata HOM05D011101 ORTHO05D013180 2.1e-87 325.9 185 100.0
A06p27180 Brassica napus HOM05D011101 ORTHO05D013180 9.6e-77 290.4 184 91.3
BraA06t25660Z Brassica rapa HOM05D011101 ORTHO05D013180 3.1e-75 285.4 184 90.2
Thhalv10011004m.g Eutrema salsugineum HOM05D011101 ORTHO05D013180 4.2e-72 275.0 185 85.9
CARHR156120 Cardamine hirsuta HOM05D011101 ORTHO05D013180 1.8e-70 269.6 186 84.4
Sp5g14400 Schrenkiella parvula HOM05D011101 ORTHO05D013180 3.3e-69 265.4 187 83.4
BcaC01g01820 Brassica carinata HOM05D011101 ORTHO05D013180 5.3e-67 258.1 185 80.5
C03p71620 Brassica napus HOM05D011101 ORTHO05D013180 5.3e-67 258.1 185 80.5
BolC3t19453H Brassica oleracea HOM05D011101 ORTHO05D013180 5.3e-67 258.1 185 80.5
A06p20170 Brassica napus HOM05D011101 ORTHO05D013180 6.9e-67 257.7 185 81.1
BcaB01g00919 Brassica carinata HOM05D011101 ORTHO05D013180 9.0e-67 257.3 185 76.8
AL5G26710 Arabidopsis lyrata HOM05D011101 ORTHO05D013180 5.8e-66 254.6 183 82.0
BraA06t25101Z Brassica rapa HOM05D011101 ORTHO05D013180 7.6e-66 254.2 185 80.5
AT3G47480 Arabidopsis thaliana HOM05D011101 ORTHO05D013180 2.4e-64 249.2 185 79.5
BcaC01g02277 Brassica carinata HOM05D011101 ORTHO05D013180 1.6e-60 236.5 185 73.5
Carub.0005s1357 Capsella rubella HOM05D011101 ORTHO05D013180 1.6e-52 209.9 161 77.6
C03p67100 Brassica napus HOM05D011101 ORTHO05D013180 7.2e-48 194.5 185 64.9
BolC3t18991H Brassica oleracea HOM05D011101 ORTHO05D013180 7.2e-48 194.5 185 64.9
Actinidia35004 Actinidia chinensis HOM05D002107 ORTHO05D002067 2.2e-12 76.6 120 40.0
Cpa.g.sc111.15 Carica papaya HOM05D002107 ORTHO05D002067 2.8e-12 76.3 190 41.1
MD06G1194700 Malus domestica HOM05D002107 ORTHO05D002067 2.0e-10 70.1 107 46.7
CSS0038574 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 3.5e-10 69.3 200 36.5
Haze_07315 Corylus avellana HOM05D002107 ORTHO05D002067 5.9e-10 68.6 89 53.9
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 7.7e-10 68.2 137 36.5
Prupe.3G266000 Prunus persica HOM05D002107 ORTHO05D002067 1.3e-09 67.4 117 46.2
Prupe.5G194800 Prunus persica HOM05D002107 ORTHO05D002067 1.3e-09 67.4 95 52.6
Cfa018931 Carpinus fangiana HOM05D002107 ORTHO05D002067 1.7e-09 67.0 185 34.6
FAN05G5651 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.0e-09 65.5 117 45.3
CSS0005295 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 6.5e-09 65.1 61 55.7
CSS0013301 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 8.6e-09 64.7 114 36.8
Thecc.04G084400 Theobroma cacao HOM05D002107 ORTHO05D002067 8.6e-09 64.7 95 44.2
Ciclev10022426m.g Citrus clementina HOM05D002107 ORTHO05D002067 1.5e-08 63.9 191 32.5
Lj4P111T48 Lonicera japonica HOM05D002107 ORTHO05D002067 1.5e-08 63.9 97 55.7
MD00G1125300 Malus domestica HOM05D002107 ORTHO05D002067 1.5e-08 63.9 119 38.7
Sed0018974 Sechium edule HOM05D002107 ORTHO05D002067 1.5e-08 63.9 118 44.1
Actinidia19036 Actinidia chinensis HOM05D002107 ORTHO05D002067 2.5e-08 63.2 70 48.6
Glyma.18G260700 Glycine max HOM05D002107 ORTHO05D002067 2.5e-08 63.2 117 46.2
SalBow1G3475 Salvia bowleyana HOM05D002107 ORTHO05D002067 4.2e-08 62.4 69 44.9
SalBow1G4949 Salvia bowleyana HOM05D002107 ORTHO05D002067 4.2e-08 62.4 69 44.9
Solyc02g067220.4 Solanum lycopersicum HOM05D002107 ORTHO05D002067 4.2e-08 62.4 64 48.4
PGSC0003DMG400025131 Solanum tuberosum HOM05D002107 ORTHO05D002067 4.2e-08 62.4 79 41.8
Duzib205G1175 Durio zibethinus HOM05D002107 ORTHO05D002067 5.5e-08 62.0 201 33.8
Rhsim10G0037300 Rhododendron simsii HOM05D002107 ORTHO05D002067 5.5e-08 62.0 91 54.9
Sopen02g016400 Solanum pennellii HOM05D002107 ORTHO05D002067 5.5e-08 62.0 61 50.8
CSS0029813 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 7.2e-08 61.6 117 45.3
Glyma.14G170400 Glycine max HOM05D002107 ORTHO05D002067 7.2e-08 61.6 160 31.9
HanXRQChr12g0362211 Helianthus annuus HOM05D002107 ORTHO05D002067 7.2e-08 61.6 64 68.8
Lalb_Chr09g0329251 Lupinus albus HOM05D002107 ORTHO05D002067 9.5e-08 61.2 92 41.3
Lj5C110T20 Lonicera japonica HOM05D002107 ORTHO05D002067 1.2e-07 60.8 105 35.2
PSO017G4518 Papaver somniferum HOM05D002107 ORTHO05D002067 1.2e-07 60.8 98 52.0
TAR374G0829 Trochodendron aralioides HOM05D002107 ORTHO05D002067 1.2e-07 60.8 190 35.8
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 1.6e-07 60.5 117 35.9
Ca_18827_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.6e-07 60.5 104 38.5
Ca_30086_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.6e-07 60.5 104 38.5
Cc07_g03480 Coffea canephora HOM05D002107 ORTHO05D002067 1.6e-07 60.5 126 33.3
FAN09G2398 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.6e-07 60.5 117 43.6
Lj3P1036T18 Lonicera japonica HOM05D002107 ORTHO05D002067 1.6e-07 60.5 71 64.8
PGR083G0276 Punica granatum HOM05D002107 ORTHO05D002067 1.6e-07 60.5 80 55.0
TWI32G0278 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 1.6e-07 60.5 71 46.5
C04p46070 Brassica napus HOM05D002107 ORTHO05D002067 2.1e-07 60.1 112 36.6
BolC4t26192H Brassica oleracea HOM05D002107 ORTHO05D002067 2.1e-07 60.1 112 36.6
Dinv33764 Davidia involucrata HOM05D002107 ORTHO05D002067 2.1e-07 60.1 67 55.2
FvH4_6g48240 Fragaria vesca HOM05D002107 ORTHO05D002067 2.1e-07 60.1 117 43.6
FAN02G0855 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.1e-07 60.1 117 43.6
FAN05G0674 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.1e-07 60.1 117 43.6
FAN14G4105 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.1e-07 60.1 117 43.6
Manes.01G034900 Manihot esculenta HOM05D002107 ORTHO05D002067 2.1e-07 60.1 124 33.9
A04p12390 Brassica napus HOM05D002107 ORTHO05D002067 2.8e-07 59.7 112 36.6
BraA04t16902Z Brassica rapa HOM05D002107 ORTHO05D002067 2.8e-07 59.7 112 36.6
Cc04_g16480 Coffea canephora HOM05D002107 ORTHO05D002067 2.8e-07 59.7 68 41.2
SalBow3G1393 Salvia bowleyana HOM05D002107 ORTHO05D002067 2.8e-07 59.7 65 46.2
Solyc02g088090.1 Solanum lycopersicum HOM05D002107 ORTHO05D002067 2.8e-07 59.7 147 34.7
TWI75G1605 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 2.8e-07 59.7 120 42.5
CANSAT64G0045 Cannabis sativa HOM05D002107 ORTHO05D002067 3.6e-07 59.3 126 31.0
MELO3C001988.2 Cucumis melo HOM05D002107 ORTHO05D002067 3.6e-07 59.3 114 35.1
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 3.6e-07 59.3 108 35.2
Nitab4.5_0000212g0050 Nicotiana tabacum HOM05D002107 ORTHO05D002067 3.6e-07 59.3 91 39.6
SGA_v2.0_scaffold413G51189 Striga asiatica HOM05D002107 ORTHO05D002067 3.6e-07 59.3 137 38.0
TWI34G1788 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 3.6e-07 59.3 95 41.1
Aa31LG2G4190 Aethionema arabicum HOM05D002107 ORTHO05D002067 4.7e-07 58.9 186 29.0
CiPaw.04G016200 Carya illinoinensis HOM05D002107 ORTHO05D002067 4.7e-07 58.9 110 36.4
DCAR_005558 Daucus carota HOM05D002107 ORTHO05D002067 4.7e-07 58.9 97 42.3
HanXRQChr16g0503101 Helianthus annuus HOM05D002107 ORTHO05D002067 4.7e-07 58.9 66 39.4
MD09G1052700 Malus domestica HOM05D002107 ORTHO05D002067 4.7e-07 58.9 143 40.6
Oeu014037.1 Olea europaea HOM05D002107 ORTHO05D002067 4.7e-07 58.9 81 40.7
A09p03890 Brassica napus HOM05D002107 ORTHO05D002067 6.1e-07 58.5 95 40.0
BraA09t36026Z Brassica rapa HOM05D002107 ORTHO05D002067 6.1e-07 58.5 95 40.0
CAN.G206.162 Capsicum annuum HOM05D002107 ORTHO05D002067 6.1e-07 58.5 152 39.5
CiPaw.05G133300 Carya illinoinensis HOM05D002107 ORTHO05D002067 6.1e-07 58.5 167 30.5
CiPaw.12G012900 Carya illinoinensis HOM05D002107 ORTHO05D002067 6.1e-07 58.5 124 44.4
SGA_v2.0_scaffold122G33232 Striga asiatica HOM05D002107 ORTHO05D002067 6.1e-07 58.5 105 33.3
CsaV3_1G005550 Cucumis sativus L. HOM05D002107 ORTHO05D002067 8.0e-07 58.2 199 36.7
FAN08G2822 Fragaria x ananassa HOM05D002107 ORTHO05D002067 8.0e-07 58.2 193 34.2
Gohir.D04G048200 Gossypium hirsutum HOM05D002107 ORTHO05D002067 8.0e-07 58.2 110 34.5
Gorai.012G053700 Gossypium raimondii HOM05D002107 ORTHO05D002067 8.0e-07 58.2 110 33.6
Lsat_1_v5_gn_8_51200 Lactuca sativa HOM05D002107 ORTHO05D002067 8.0e-07 58.2 67 46.3
Sp7g02340 Schrenkiella parvula HOM05D002107 ORTHO05D002067 8.0e-07 58.2 112 36.6
BcaC04g23853 Brassica carinata HOM05D002107 ORTHO05D002067 1.0e-06 57.8 95 40.0
C09p04120 Brassica napus HOM05D002107 ORTHO05D002067 1.0e-06 57.8 95 40.0
BolC9t53342H Brassica oleracea HOM05D002107 ORTHO05D002067 1.0e-06 57.8 95 40.0
Duzib084G0513 Durio zibethinus HOM05D002107 ORTHO05D002067 1.0e-06 57.8 200 36.0
Duzib264G1091 Durio zibethinus HOM05D002107 ORTHO05D002067 1.0e-06 57.8 74 56.8
Migut.H00932 Erythranthe guttata HOM05D002107 ORTHO05D002067 1.0e-06 57.8 81 51.9
Gohir.A05G366900 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 110 34.5
Gohir.D04G047800 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 110 34.5
Gorai.012G053200 Gossypium raimondii HOM05D002107 ORTHO05D002067 1.0e-06 57.8 110 34.5
Manes.01G092300 Manihot esculenta HOM05D002107 ORTHO05D002067 1.0e-06 57.8 121 35.5
Medtr7g011010 Medicago truncatula HOM05D002107 ORTHO05D002067 1.0e-06 57.8 92 48.9
Nn4g23202 Nelumbo nucifera HOM05D002107 ORTHO05D002067 1.0e-06 57.8 109 31.2
Oeu002090.1 Olea europaea HOM05D002107 ORTHO05D002067 1.0e-06 57.8 171 28.1
QL10p017195 Quercus lobata HOM05D002107 ORTHO05D002067 1.0e-06 57.8 211 36.5
Rhsim08G0154100 Rhododendron simsii HOM05D002107 ORTHO05D002067 1.0e-06 57.8 85 41.2
RcHm_v2.0_Chr7g0181581 Rosa chinensis HOM05D002107 ORTHO05D002067 1.0e-06 57.8 73 57.5
Sp2g17630 Schrenkiella parvula HOM05D002107 ORTHO05D002067 1.0e-06 57.8 94 40.4
THA.LOC104805475 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 1.0e-06 57.8 96 40.6
Actinidia38783 Actinidia chinensis HOM05D002107 ORTHO05D002067 1.4e-06 57.4 117 35.0
AL5G18860 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 1.4e-06 57.4 114 36.0
Thhalv10028351m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 1.4e-06 57.4 112 35.7
Gohir.D11G074300 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.4e-06 57.4 95 50.5
Lsat_1_v5_gn_1_14080 Lactuca sativa HOM05D002107 ORTHO05D002067 1.4e-06 57.4 186 29.0
Psat3g200360 Pisum sativum HOM05D002107 ORTHO05D002067 1.4e-06 57.4 72 47.2
SGA_v2.0_scaffold30G12542 Striga asiatica HOM05D002107 ORTHO05D002067 1.4e-06 57.4 105 42.9
BcaC08g44426 Brassica carinata HOM05D002107 ORTHO05D002067 1.8e-06 57.0 110 35.5
C06p18630 Brassica napus HOM05D002107 ORTHO05D002067 1.8e-06 57.0 110 35.5
BolC6t37076H Brassica oleracea HOM05D002107 ORTHO05D002067 1.8e-06 57.0 110 35.5
ClCG04G012200 Citrullus lanatus HOM05D002107 ORTHO05D002067 1.8e-06 57.0 110 43.6
Lsat_1_v5_gn_1_14060 Lactuca sativa HOM05D002107 ORTHO05D002067 1.8e-06 57.0 110 33.6
Nitab4.5_0000568g0010 Nicotiana tabacum HOM05D002107 ORTHO05D002067 1.8e-06 57.0 167 35.9
Sopen02g032800 Solanum pennellii HOM05D002107 ORTHO05D002067 1.8e-06 57.0 150 28.0
MSTRG.4436 Avicennia marina HOM05D002107 ORTHO05D002067 2.3e-06 56.6 90 51.1
CANSAT80G2282 Cannabis sativa HOM05D002107 ORTHO05D002067 2.3e-06 56.6 108 35.2
CARHR262620 Cardamine hirsuta HOM05D002107 ORTHO05D002067 2.3e-06 56.6 117 33.3
Haze_14513 Corylus avellana HOM05D002107 ORTHO05D002067 2.3e-06 56.6 113 44.2
Dinv34141 Davidia involucrata HOM05D002107 ORTHO05D002067 2.3e-06 56.6 149 40.3
MBI05_g10775_MAGBIO Magnolia biondii HOM05D002107 ORTHO05D002067 2.3e-06 56.6 95 49.5
Prupe.1G276100 Prunus persica HOM05D002107 ORTHO05D002067 2.3e-06 56.6 82 52.4
ATR0564G478 Amborella trichopoda HOM05D002107 ORTHO05D002067 3.0e-06 56.2 125 42.4
Migut.K01318 Erythranthe guttata HOM05D002107 ORTHO05D002067 3.0e-06 56.2 71 60.6
Gohir.A04G147000 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.0e-06 56.2 151 29.1
Gohir.A11G070400 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.0e-06 56.2 95 49.5
Gorai.007G079700 Gossypium raimondii HOM05D002107 ORTHO05D002067 3.0e-06 56.2 95 49.5
PSO013G0121 Papaver somniferum HOM05D002107 ORTHO05D002067 3.0e-06 56.2 117 36.8
Psat7g135920 Pisum sativum HOM05D002107 ORTHO05D002067 3.0e-06 56.2 68 44.1
PGSC0003DMG400001333 Solanum tuberosum HOM05D002107 ORTHO05D002067 3.0e-06 56.2 153 28.8
AUR62039791 Chenopodium quinoa HOM05D002107 ORTHO05D002067 4.0e-06 55.8 65 60.0
Gohir.A09G014700 Gossypium hirsutum HOM05D002107 ORTHO05D002067 4.0e-06 55.8 88 40.9
Lsat_1_v5_gn_2_87480 Lactuca sativa HOM05D002107 ORTHO05D002067 4.0e-06 55.8 75 57.3
Potri.005G052800 Populus trichocarpa HOM05D000227 ORTHO05D000451 4.0e-06 55.8 108 33.3
Potri.008G087900 Populus trichocarpa HOM05D002107 ORTHO05D002067 4.0e-06 55.8 79 36.7
PGR083G0803 Punica granatum HOM05D002107 ORTHO05D002067 4.0e-06 55.8 89 39.3
HPP92_011251 Vanilla planifolia HOM05D002107 ORTHO05D002067 4.0e-06 55.8 100 46.0
Atru.chr2.808 Acer truncatum HOM05D000227 ORTHO05D000451 5.2e-06 55.5 108 32.4
A07p20070 Brassica napus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 110 34.5
BraA07t29706Z Brassica rapa HOM05D002107 ORTHO05D002067 5.2e-06 55.5 110 34.5
Ciclev10002774m.g Citrus clementina HOM05D000227 ORTHO05D000451 5.2e-06 55.5 108 33.3
DCAR_011089 Daucus carota HOM05D002107 ORTHO05D002067 5.2e-06 55.5 119 40.3
Dinv38723 Davidia involucrata HOM05D002107 ORTHO05D002067 5.2e-06 55.5 79 54.4
Thhalv10005639m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 5.2e-06 55.5 95 48.4
FvH4_5g14810 Fragaria vesca HOM05D002107 ORTHO05D002067 5.2e-06 55.5 191 32.5
FAN18G3479 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.2e-06 55.5 191 32.5
Lalb_Chr05g0220321 Lupinus albus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 70 60.0
Nitab4.5_0004623g0010 Nicotiana tabacum HOM05D002107 ORTHO05D002067 5.2e-06 55.5 171 31.0
Peaxi162Scf00451g00071 Petunia axillaris HOM05D002107 ORTHO05D002067 5.2e-06 55.5 105 35.2
QL10p017202 Quercus lobata HOM05D002107 ORTHO05D002067 5.2e-06 55.5 116 45.7
vmacro17534 Vaccinium macrocarpon HOM05D002107 ORTHO05D002067 5.2e-06 55.5 109 45.9
Eucgr.K02486 Eucalyptus grandis HOM05D002107 ORTHO05D002067 6.8e-06 55.1 97 39.2
Phvul.008G037300 Phaseolus vulgaris HOM05D002107 ORTHO05D002067 6.8e-06 55.1 95 51.6
AT3G29000 Arabidopsis thaliana HOM05D002107 ORTHO05D002067 8.8e-06 54.7 112 33.9
CAN.G1103.11 Capsicum annuum HOM05D002107 ORTHO05D002067 8.8e-06 54.7 84 40.5
Ca_02904_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 8.8e-06 54.7 161 36.6
FvH4_4g31200 Fragaria vesca HOM05D002107 ORTHO05D002067 8.8e-06 54.7 113 32.7
FAN12G0510 Fragaria x ananassa HOM05D002107 ORTHO05D002067 8.8e-06 54.7 113 32.7
Glyma.20G034200 Glycine max HOM05D002107 ORTHO05D002067 8.8e-06 54.7 108 35.2
Gohir.D04G191400 Gossypium hirsutum HOM05D002107 ORTHO05D002067 8.8e-06 54.7 110 32.7
Hma1.2p1_0795F.1_g218960 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 8.8e-06 54.7 86 40.7
TWI18G1108 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 8.8e-06 54.7 97 38.1
HPP92_016259 Vanilla planifolia HOM05D002107 ORTHO05D002067 8.8e-06 54.7 107 36.4


User provided reference genes

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