Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.6e-57 226.1 133 100.0
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 4.4e-47 191.4 138 87.7
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 3.8e-43 178.3 138 71.0
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 3.6e-41 171.8 139 81.3
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 8.0e-41 170.6 139 79.9
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 1.8e-40 169.5 139 76.3
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 3.9e-40 168.3 139 80.6
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 3.9e-40 168.3 139 80.6
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 5.2e-40 167.9 139 75.5
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 1.8e-37 159.5 139 74.1
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 6.5e-35 151.0 141 70.9
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 3.2e-34 148.7 137 63.5
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 3.2e-34 148.7 137 63.5
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 5.5e-34 147.9 141 57.4
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 4.7e-33 144.8 141 69.5
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 4.0e-32 141.7 140 70.0
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 5.2e-32 141.4 140 65.7
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.2e-31 140.2 141 65.2
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 3.4e-31 138.7 140 55.0
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.4e-31 138.3 141 63.8
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.7e-30 136.3 140 65.0
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.8e-30 135.6 96 85.4
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 3.7e-30 135.2 140 57.9
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 3.1e-29 132.1 140 68.6
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.3e-19 99.4 91 52.7
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 2.9e-19 99.0 96 51.0
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 3.8e-19 98.6 91 67.0
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 6.6e-19 97.8 91 69.2
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 8.6e-19 97.4 83 61.4
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.1e-18 97.1 98 56.1
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.1e-18 97.1 97 49.5
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 1.5e-18 96.7 91 72.5
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.5e-18 96.7 91 72.5
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.5e-18 96.7 83 55.4
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 1.9e-18 96.3 141 57.4
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.9e-18 96.3 89 59.6
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.9e-18 96.3 83 67.5
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 2.5e-18 95.9 91 64.8
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.5e-18 95.9 91 71.4
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.5e-18 95.9 88 59.1
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.3e-18 95.5 91 50.5
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.3e-18 95.5 98 52.0
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 3.3e-18 95.5 100 67.0
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 7.2e-18 94.4 83 72.3
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 9.5e-18 94.0 91 71.4
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 9.5e-18 94.0 138 42.8
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.2e-17 93.6 141 46.8
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 1.2e-17 93.6 96 62.5
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.2e-17 93.6 88 67.0
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 2.1e-17 92.8 83 69.9
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 2.1e-17 92.8 83 69.9
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.8e-17 92.4 91 49.5
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 2.8e-17 92.4 98 53.1
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 2.8e-17 92.4 96 68.8
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.8e-17 92.4 138 50.7
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.8e-17 92.4 91 61.5
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.6e-17 92.0 141 43.3
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.6e-17 92.0 141 43.3
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 3.6e-17 92.0 98 59.2
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 4.7e-17 91.7 85 69.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.1e-17 91.3 120 48.3
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 6.1e-17 91.3 120 48.3
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 6.1e-17 91.3 91 58.2
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 6.1e-17 91.3 143 40.6
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 6.1e-17 91.3 138 44.9
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.0e-16 90.5 87 67.8
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.4e-16 90.1 104 53.8
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 1.4e-16 90.1 86 73.3
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 1.8e-16 89.7 87 58.6
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 2.3e-16 89.4 86 48.8
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 2.3e-16 89.4 101 57.4
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.3e-16 89.4 91 62.6
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 3.0e-16 89.0 126 58.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 4.0e-16 88.6 104 52.9
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 5.2e-16 88.2 88 51.1
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.2e-16 88.2 98 48.0
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.2e-16 88.2 98 48.0
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 6.8e-16 87.8 104 52.9
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 6.8e-16 87.8 141 39.0
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 6.8e-16 87.8 139 51.1
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 8.9e-16 87.4 87 54.0
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 8.9e-16 87.4 97 50.5
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 8.9e-16 87.4 140 52.1
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 1.2e-15 87.0 87 56.3
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.5e-15 86.7 88 62.5
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.5e-15 86.7 88 47.7
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.5e-15 86.7 98 50.0
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 1.5e-15 86.7 99 47.5
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.6e-15 85.9 92 59.8
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 2.6e-15 85.9 98 44.9
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 3.4e-15 85.5 89 70.8
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 5.7e-15 84.7 138 52.9
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 5.7e-15 84.7 78 61.5
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 9.8e-15 84.0 127 43.3
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 9.8e-15 84.0 102 40.2
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 9.8e-15 84.0 72 65.3
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 1.3e-14 83.6 124 54.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 2.2e-14 82.8 94 58.5
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.8e-14 82.4 82 51.2
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.7e-14 82.0 93 47.3
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 3.7e-14 82.0 83 68.7
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.9e-14 81.6 91 59.3
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 4.9e-14 81.6 99 49.5
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 6.3e-14 81.3 96 42.7
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 6.3e-14 81.3 86 60.5
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.1e-13 80.5 97 54.6
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.1e-13 80.5 82 50.0
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.8e-13 79.7 90 51.1
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.8e-13 79.7 91 41.8
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.4e-13 79.3 124 48.4
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 2.4e-13 79.3 98 44.9
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 2.4e-13 79.3 74 51.4
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 2.4e-13 79.3 118 45.8
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.4e-13 79.3 92 60.9
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.4e-13 79.3 92 60.9
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 4.1e-13 78.6 87 51.7
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.1e-13 78.6 59 71.2
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.1e-13 78.6 94 44.7
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 4.1e-13 78.6 133 53.4
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.1e-13 78.6 90 57.8
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 4.1e-13 78.6 139 43.9
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 5.4e-13 78.2 86 67.4
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 5.4e-13 78.2 82 61.0
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 9.2e-13 77.4 89 46.1
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 1.2e-12 77.0 88 68.2
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.0e-12 76.3 89 48.3
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 2.0e-12 76.3 80 46.2
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.0e-12 76.3 131 41.2
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 2.7e-12 75.9 80 70.0
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.7e-12 75.9 85 61.2
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 2.7e-12 75.9 82 51.2
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.7e-12 75.9 93 59.1
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 3.5e-12 75.5 88 44.3
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 3.5e-12 75.5 125 35.2
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.5e-12 75.1 129 34.9
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 4.5e-12 75.1 80 63.8
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 4.5e-12 75.1 81 69.1
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 5.9e-12 74.7 129 34.9
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 5.9e-12 74.7 129 50.4
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 5.9e-12 74.7 130 50.0
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 5.9e-12 74.7 82 61.0
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 5.9e-12 74.7 80 70.0
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 7.8e-12 74.3 88 46.6
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 7.8e-12 74.3 90 62.2
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 7.8e-12 74.3 81 69.1
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.0e-11 73.9 82 56.1
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.3e-11 73.6 78 67.9
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 1.7e-11 73.2 68 54.4
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.7e-11 73.2 77 54.5
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 1.7e-11 73.2 82 58.5
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.3e-11 72.8 96 47.9
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.9e-11 72.4 91 60.4
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 2.9e-11 72.4 90 46.7
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 3.9e-11 72.0 117 37.6
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 3.9e-11 72.0 91 49.5
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 5.0e-11 71.6 85 61.2
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.6e-11 70.9 96 45.8
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 8.6e-11 70.9 69 47.8
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.1e-10 70.5 101 47.5
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.1e-10 70.5 83 61.4
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.5e-10 70.1 81 66.7
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.5e-10 70.1 127 46.5
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 1.5e-10 70.1 75 50.7
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 3.3e-10 68.9 92 54.3
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 5.6e-10 68.2 91 40.7
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 5.6e-10 68.2 138 48.6
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.5e-10 67.4 125 48.0
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.5e-10 67.4 125 48.0
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 2.1e-09 66.2 79 62.0
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 2.8e-09 65.9 62 58.1
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.6e-09 65.5 68 48.5
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 4.7e-09 65.1 107 35.5
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.8e-08 63.2 126 39.7
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 4.0e-08 62.0 120 35.0
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 3.7e-06 55.5 68 41.2
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.9e-06 55.1 112 40.2
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 8.3e-06 54.3 77 40.3


User provided reference genes

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