Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.3e-45 186.0 93 100.0
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 4.7e-40 167.5 93 89.2
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 4.7e-40 167.5 93 89.2
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 4.7e-40 167.5 93 89.2
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 4.9e-37 157.5 91 83.5
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.9e-36 155.6 92 83.7
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.9e-36 155.6 92 83.7
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 5.4e-36 154.1 92 82.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 7.0e-36 153.7 92 83.7
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 9.2e-36 153.3 91 81.3
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 2.7e-35 151.8 92 82.6
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 2.7e-35 151.8 92 82.6
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.0e-34 148.3 91 81.3
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 2.8e-32 141.7 90 78.9
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.6e-32 141.4 91 80.2
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.6e-30 135.2 92 73.9
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.4e-30 134.8 91 70.3
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-29 132.9 91 67.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-29 132.9 91 67.0
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.4e-28 129.4 95 66.3
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.9e-28 129.0 92 69.6
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.4e-28 128.6 91 65.9
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 4.1e-28 127.9 91 67.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 4.1e-28 127.9 91 67.0
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.4e-28 127.5 92 69.6
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 7.1e-28 127.1 89 69.7
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 7.1e-28 127.1 91 65.9
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.2e-27 126.3 92 68.5
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.2e-27 126.3 91 65.9
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.6e-27 125.9 91 62.6
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.6e-27 125.9 91 67.0
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 2.1e-27 125.6 91 65.9
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.1e-27 125.6 91 65.9
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 2.7e-27 125.2 91 63.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 6.0e-27 124.0 91 67.0
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 7.8e-27 123.6 90 65.6
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.0e-26 123.2 91 63.7
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.0e-26 123.2 93 65.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.0e-26 123.2 91 69.2
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.0e-26 123.2 92 65.2
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.3e-26 122.9 91 62.6
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.7e-26 122.5 91 61.5
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 3.0e-26 121.7 91 69.2
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 3.0e-26 121.7 91 61.5
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.9e-26 121.3 91 64.8
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 3.9e-26 121.3 91 63.7
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.9e-26 121.3 93 67.7
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 6.6e-26 120.6 91 64.8
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 6.6e-26 120.6 91 64.8
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 8.6e-26 120.2 91 67.0
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 1.1e-25 119.8 91 63.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 1.1e-25 119.8 92 65.2
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.9e-25 119.0 91 65.9
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.5e-25 118.6 91 60.4
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 3.3e-25 118.2 91 64.8
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.3e-25 118.2 91 65.9
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 3.3e-25 118.2 91 60.4
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.3e-25 117.9 98 59.2
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 4.3e-25 117.9 90 61.1
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.6e-25 117.5 92 64.1
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 7.3e-25 117.1 84 64.3
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 7.3e-25 117.1 91 63.7
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 7.3e-25 117.1 91 64.8
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 60.4
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 9.5e-25 116.7 92 64.1
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 63.7
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 63.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.2e-24 116.3 91 60.4
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.6e-24 115.9 90 60.0
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.6e-24 115.9 92 60.9
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.6e-24 115.9 91 60.4
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.6e-24 115.9 91 62.6
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.1e-24 115.5 91 59.3
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 2.1e-24 115.5 92 65.2
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.1e-24 115.5 91 61.5
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.8e-24 115.2 92 66.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.6e-24 114.8 91 62.6
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 8.1e-24 113.6 92 64.1
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 8.1e-24 113.6 91 63.7
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.1e-23 113.2 91 63.7
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.1e-23 113.2 91 60.4
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.1e-23 113.2 91 59.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 3.1e-23 111.7 92 59.8
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 3.1e-23 111.7 92 63.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.1e-23 111.7 92 63.0
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 5.2e-23 110.9 91 59.3
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 5.2e-23 110.9 92 63.0
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 6.8e-23 110.5 91 57.1
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 8.9e-23 110.2 91 61.5
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.5e-22 109.4 77 67.5
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.5e-22 109.4 77 67.5
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.5e-22 109.4 92 63.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 5.8e-22 107.5 91 63.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 5.8e-22 107.5 92 56.5
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 5.8e-22 107.5 92 58.7
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 7.6e-22 107.1 91 57.1
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.7e-21 105.9 92 57.6
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.9e-21 105.1 91 61.5
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.9e-21 105.1 91 58.2
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 8.4e-21 103.6 91 53.8
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.9e-20 102.4 91 59.3
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 7.1e-20 100.5 91 58.2
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.1e-20 100.5 91 58.2
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.1e-20 100.5 91 58.2
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.6e-19 99.4 91 57.1
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 2.1e-19 99.0 92 58.7
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 6.0e-19 97.4 93 50.5
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.0e-18 96.7 91 53.8
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.3e-18 96.3 91 57.1
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.7e-18 95.9 66 72.7
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 2.3e-18 95.5 71 64.8
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.3e-18 95.5 85 55.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 3.9e-18 94.7 76 63.2
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 3.9e-18 94.7 77 59.7
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 8.6e-18 93.6 76 65.8
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 2.5e-17 92.0 99 49.5
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.5e-17 92.0 76 59.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 3.3e-17 91.7 62 75.8
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 3.3e-17 91.7 90 53.3
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.3e-17 91.3 63 66.7
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 5.6e-17 90.9 89 56.2
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 7.3e-17 90.5 99 47.5
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 2.1e-16 89.0 78 59.0
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.1e-16 89.0 72 55.6
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 2.8e-16 88.6 91 47.3
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.8e-16 88.6 91 48.4
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 4.7e-16 87.8 89 55.1
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 4.7e-16 87.8 90 46.7
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 8.1e-16 87.0 89 52.8
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-15 86.7 89 56.2
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.2e-14 83.2 91 45.1
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.2e-14 83.2 83 48.2
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 2.0e-14 82.4 128 41.4
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 7.6e-14 80.5 81 51.9
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 9.9e-14 80.1 83 51.8
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.7e-13 79.3 91 52.7
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 2.2e-13 79.0 83 48.2
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.9e-12 75.9 75 53.3
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 4.6e-11 71.2 66 57.6
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 1.1e-07 60.1 42 71.4
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.1e-07 60.1 62 46.8
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 1.8e-07 59.3 71 45.1
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 4.0e-07 58.2 55 47.3
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 9.0e-07 57.0 51 54.9
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 4.4e-06 54.7 37 67.6


User provided reference genes

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