Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10682 Brassica carinata HOM05D005522 ORTHO05D007414 1.0e-168 596.7 298 100.0
Thhalv10010214m.g Eutrema salsugineum HOM05D005522 ORTHO05D007414 3.4e-108 395.6 429 53.4
Sp5g14030 Schrenkiella parvula HOM05D005522 ORTHO05D007414 1.3e-107 393.7 429 53.4
BcaB01g00861 Brassica carinata HOM05D005522 ORTHO05D007414 2.9e-107 392.5 429 52.9
BraA06t25053Z Brassica rapa HOM05D005522 ORTHO05D007414 3.2e-106 389.0 429 52.2
A06p19740 Brassica napus HOM05D005522 ORTHO05D007414 7.1e-106 387.9 429 52.2
BcaC01g01764 Brassica carinata HOM05D005522 ORTHO05D007414 3.5e-105 385.6 429 51.7
C03p72160 Brassica napus HOM05D005522 ORTHO05D007414 3.5e-105 385.6 429 51.7
BolC3t19512H Brassica oleracea HOM05D005522 ORTHO05D007414 3.5e-105 385.6 429 51.7
Carub.0005s1405 Capsella rubella HOM05D005522 ORTHO05D007414 1.7e-104 383.3 429 52.0
AL5G27240 Arabidopsis lyrata HOM05D005522 ORTHO05D007414 2.3e-104 382.9 429 51.5
AT3G47930 Arabidopsis thaliana HOM05D005522 ORTHO05D007414 8.7e-104 380.9 429 51.5
Aa31LG4G16570 Aethionema arabicum HOM05D005522 ORTHO05D007414 2.8e-102 375.9 429 50.8
THA.LOC104816408 Tarenaya hassleriana HOM05D005522 ORTHO05D007414 2.4e-101 372.9 424 50.2
FAN09G3441 Fragaria x ananassa HOM05D005522 ORTHO05D007414 5.8e-100 368.2 408 51.7
FAN05G4952 Fragaria x ananassa HOM05D005522 ORTHO05D007414 2.9e-99 365.9 422 50.2
ClCG04G004060 Citrullus lanatus HOM05D005522 ORTHO05D007414 1.9e-98 363.2 423 48.7
CsaV3_UNG143090 Cucumis sativus L. HOM05D005522 ORTHO05D007414 1.9e-98 363.2 423 48.9
FvH4_6g25110 Fragaria vesca HOM05D005522 ORTHO05D007414 1.9e-98 363.2 422 49.5
FAN14G2465 Fragaria x ananassa HOM05D005522 ORTHO05D007414 1.9e-98 363.2 422 49.5
FAN02G3261 Fragaria x ananassa HOM05D005522 ORTHO05D007414 2.4e-98 362.8 422 49.8
MD00G1074000 Malus domestica HOM05D005522 ORTHO05D007414 3.2e-98 362.5 429 49.0
Actinidia39175 Actinidia chinensis HOM05D005522 ORTHO05D007414 7.1e-98 361.3 429 48.0
DCAR_020543 Daucus carota HOM05D005522 ORTHO05D007414 1.6e-97 360.1 419 47.7
RcHm_v2.0_Chr2g0124941 Rosa chinensis HOM05D005522 ORTHO05D007414 1.6e-97 360.1 422 49.3
Atru.chr1.1278 Acer truncatum HOM05D005522 ORTHO05D007414 2.7e-97 359.4 429 48.0
Dinv04140 Davidia involucrata HOM05D005522 ORTHO05D007414 2.7e-97 359.4 429 49.0
Gohir.A11G308400 Gossypium hirsutum HOM05D005522 ORTHO05D007414 4.6e-97 358.6 429 48.0
MELO3C020736.2 Cucumis melo HOM05D005522 ORTHO05D007414 6.0e-97 358.2 423 48.0
Gorai.007G353900 Gossypium raimondii HOM05D005522 ORTHO05D007414 1.0e-96 357.5 429 47.8
Sed0013105 Sechium edule HOM05D005522 ORTHO05D007414 2.3e-96 356.3 423 48.0
Hma1.2p1_0056F.1_g031850 Hydrangea macrophylla HOM05D005522 ORTHO05D007414 3.0e-96 355.9 431 47.3
Prupe.7G046300 Prunus persica HOM05D005522 ORTHO05D007414 3.0e-96 355.9 426 47.7
Rhsim03G0034500 Rhododendron simsii HOM05D005522 ORTHO05D007414 3.0e-96 355.9 429 47.8
Migut.J01682 Erythranthe guttata HOM05D005522 ORTHO05D007414 5.1e-96 355.1 426 47.7
Dinv18487 Davidia involucrata HOM05D005522 ORTHO05D007414 6.7e-96 354.8 429 49.0
GSVIVG01033574001 Vitis vinifera HOM05D005522 ORTHO05D007414 6.7e-96 354.8 429 48.5
COL.COLO4_33937 Corchorus olitorius HOM05D005522 ORTHO05D007414 8.7e-96 354.4 427 48.0
Thecc.05G141500 Theobroma cacao HOM05D005522 ORTHO05D007414 8.7e-96 354.4 429 47.6
Cfa016729 Carpinus fangiana HOM05D005522 ORTHO05D007414 1.1e-95 354.0 430 47.2
AUR62030366 Chenopodium quinoa HOM05D005522 ORTHO05D007414 1.1e-95 354.0 423 48.0
MBI03_g28429_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 1.1e-95 354.0 429 47.3
Haze_19737 Corylus avellana HOM05D005522 ORTHO05D007414 1.9e-95 353.2 430 47.4
CSS0038435 Camellia sinensis var. sinensis HOM05D005522 ORTHO05D007414 2.5e-95 352.8 429 47.3
Cpa.g.sc5.195 Carica papaya HOM05D005522 ORTHO05D007414 2.5e-95 352.8 429 47.1
Ah.04g151150 Amaranthus hybridus HOM05D005522 ORTHO05D007414 4.3e-95 352.1 423 48.0
Duzib093G0281 Durio zibethinus HOM05D005522 ORTHO05D007414 5.6e-95 351.7 429 47.3
Lj2A394T33 Lonicera japonica HOM05D005522 ORTHO05D007414 7.4e-95 351.3 428 47.4
Oeu062462.1 Olea europaea HOM05D005522 ORTHO05D007414 9.6e-95 350.9 429 47.1
TAR171G0004 Trochodendron aralioides HOM05D005522 ORTHO05D007414 9.6e-95 350.9 431 47.3
Sopen10g030110 Solanum pennellii HOM05D005522 ORTHO05D007414 1.3e-94 350.5 423 46.6
Solyc10g079470.3 Solanum lycopersicum HOM05D005522 ORTHO05D007414 2.1e-94 349.7 423 46.3
ECA248G3368 Erigeron canadensis HOM05D005522 ORTHO05D007414 4.8e-94 348.6 427 47.1
EL10Ac3g07189 Beta vulgaris HOM05D005522 ORTHO05D007414 6.2e-94 348.2 423 48.2
CANSAT80G2685 Cannabis sativa HOM05D005522 ORTHO05D007414 6.2e-94 348.2 432 46.1
CAN.G641.42 Capsicum annuum HOM05D005522 ORTHO05D007414 8.1e-94 347.8 427 46.1
MSTRG.19821 Avicennia marina HOM05D005522 ORTHO05D007414 1.1e-93 347.4 429 47.1
AUR62040849 Chenopodium quinoa HOM05D005522 ORTHO05D007414 1.8e-93 346.7 423 47.0
RhsimUnG0217500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.8e-93 346.7 452 45.4
Glyma.02G166300 Glycine max HOM05D005522 ORTHO05D007414 2.4e-93 346.3 429 47.6
Lsat_1_v5_gn_5_159221 Lactuca sativa HOM05D005522 ORTHO05D007414 2.4e-93 346.3 423 47.3
VMungo0720G1534 Vigna mungo HOM05D005522 ORTHO05D007414 2.4e-93 346.3 427 47.1
Manes.08G056700 Manihot esculenta HOM05D005522 ORTHO05D007414 3.1e-93 345.9 429 46.4
PGSC0003DMG400008132 Solanum tuberosum HOM05D005522 ORTHO05D007414 3.1e-93 345.9 427 45.4
SalBow6G2663 Salvia bowleyana HOM05D005522 ORTHO05D007414 4.0e-93 345.5 426 46.5
Eucgr.A02267 Eucalyptus grandis HOM05D005522 ORTHO05D007414 5.3e-93 345.1 429 46.6
MBI03_g36664_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 5.3e-93 345.1 417 48.2
CANSAT80G0471 Cannabis sativa HOM05D005522 ORTHO05D007414 9.0e-93 344.4 432 45.8
Lj5g0015939 Lotus japonicus HOM05D005522 ORTHO05D007414 9.0e-93 344.4 429 46.2
SGA_v2.0_scaffold69G23141 Striga asiatica HOM05D005522 ORTHO05D007414 1.2e-92 344.0 430 46.5
Phvul.007G247900 Phaseolus vulgaris HOM05D005522 ORTHO05D007414 1.5e-92 343.6 429 46.2
HanXRQChr13g0391861 Helianthus annuus HOM05D005522 ORTHO05D007414 2.6e-92 342.8 429 47.1
Hund24634 Selenicereus undatus HOM05D005522 ORTHO05D007414 2.6e-92 342.8 423 47.5
Cc06_g18590 Coffea canephora HOM05D005522 ORTHO05D007414 3.4e-92 342.4 429 46.4
Nitab4.5_0013059g0010 Nicotiana tabacum HOM05D005522 ORTHO05D007414 7.6e-92 341.3 426 45.3
PSO384G4421 Papaver somniferum HOM05D005522 ORTHO05D007414 7.6e-92 341.3 429 46.2
Ca_21519_v3 Cicer arietinum L. HOM05D005522 ORTHO05D007414 1.0e-91 340.9 428 46.7
Lalb_Chr02g0156511 Lupinus albus HOM05D005522 ORTHO05D007414 1.3e-91 340.5 432 45.1
Medtr1g050360 Medicago truncatula HOM05D005522 ORTHO05D007414 1.3e-91 340.5 432 45.8
CiPaw.10G038000 Carya illinoinensis HOM05D005522 ORTHO05D007414 1.7e-91 340.1 430 46.0
Os11g0143500 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 3.8e-91 339.0 425 46.1
Sc19g0008330 Simmondsia chinensis HOM05D005522 ORTHO05D007414 3.8e-91 339.0 423 46.6
Gohir.D11G323800 Gossypium hirsutum HOM05D005522 ORTHO05D007414 4.9e-91 338.6 379 50.9
Zm00001eb093120 Zea mays HOM05D005522 ORTHO05D007414 1.4e-90 337.0 425 45.9
Aqoxy1G00339 Aquilegia oxysepala HOM05D005522 ORTHO05D007414 2.5e-90 336.3 431 45.0
Os12g0139600 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 3.2e-90 335.9 425 45.6
Peaxi162Scf00767g00611 Petunia axillaris HOM05D005522 ORTHO05D007414 3.2e-90 335.9 425 45.9
TWI77G0538 Tripterygium wilfordii HOM05D005522 ORTHO05D007414 9.3e-90 334.3 429 45.9
HPP92_018215 Vanilla planifolia HOM05D005522 ORTHO05D007414 2.3e-88 329.7 423 45.2
vmacro07825 Vaccinium macrocarpon HOM05D005522 ORTHO05D007414 7.4e-87 324.7 434 45.9
Ciclev10004603m.g Citrus clementina HOM05D005522 ORTHO05D007414 1.1e-85 320.9 429 45.2
ATR0721G040 Amborella trichopoda HOM05D005522 ORTHO05D007414 1.4e-85 320.5 435 43.7
QL07p006599 Quercus lobata HOM05D005522 ORTHO05D007414 1.1e-82 310.8 363 49.0
Sabra16G0043500 Salix brachista HOM05D005522 ORTHO05D007414 7.2e-82 308.1 467 41.8
Nitab4.5_0002267g0070 Nicotiana tabacum HOM05D005522 ORTHO05D007414 5.1e-80 302.0 424 43.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.8e-78 296.2 410 43.2
Glyma.10G104100 Glycine max HOM05D005522 ORTHO05D007414 1.5e-71 273.9 392 42.9
Dinv04141 Davidia involucrata HOM05D005522 ORTHO05D007414 1.3e-70 270.8 155 83.2
Prupe.7G046500 Prunus persica HOM05D005522 ORTHO05D007414 1.3e-70 270.8 374 43.9
Mapoly0077s0021 Marchantia polymorpha HOM05D005522 ORTHO05D007414 1.1e-69 267.7 455 35.8
arahy.Tifrunner.gnm1.ann1.36JCD8 Arachis hypogaea HOM05D005522 ORTHO05D007414 1.2e-68 264.2 155 80.0
arahy.Tifrunner.gnm1.ann1.86D3P6 Arachis hypogaea HOM05D005522 ORTHO05D007414 1.5e-68 263.8 155 80.0
TPR.G8835 Trifolium pratense HOM05D005522 ORTHO05D007414 4.5e-68 262.3 158 78.5
SMO146G0252 Selaginella moellendorffii HOM05D005522 ORTHO05D007414 8.5e-67 258.1 424 36.8
Pp3c14_20870 Physcomitrium patens HOM05D005522 ORTHO05D007414 5.2e-64 248.8 454 34.8
SEGI_02017 Sequoiadendron giganteum HOM05D005522 ORTHO05D007414 1.7e-54 217.2 155 64.5
SHI24609 Sapria himalayana HOM05D005522 ORTHO05D007414 2.2e-54 216.9 157 66.9
CARHR156640 Cardamine hirsuta HOM05D005522 ORTHO05D007414 4.8e-54 215.7 348 41.1
CBR_g48422 Chara braunii HOM05D005522 ORTHO05D007414 3.1e-53 213.0 517 29.8
Potri.006G043232 Populus trichocarpa HOM05D005522 ORTHO05D007414 5.9e-52 208.8 136 73.5
Potri.016G040300 Populus trichocarpa HOM05D005522 ORTHO05D007414 2.2e-51 206.8 343 38.8
AagrBONN_evm.TU.Sc2ySwM_362.2734 Anthoceros agrestis HOM05D005522 ORTHO05D007414 1.6e-49 200.7 400 32.8
C03p66920 Brassica napus HOM05D005522 ORTHO05D040474 1.8e-48 197.2 145 70.3
PRCOL_00005871 Prasinoderma coloniale HOM05D005522 ORTHO05D007414 2.5e-42 176.8 423 31.2
CARHR156650 Cardamine hirsuta HOM05D005522 ORTHO05D007414 4.9e-38 162.5 89 87.6
MD00G1048800 Malus domestica HOM05D005522 ORTHO05D007414 3.1e-37 159.8 142 62.7
MCO07G495 Micromonas commoda HOM05D005522 ORTHO05D007414 3.5e-36 156.4 420 27.6
CsaV3_4G022170 Cucumis sativus L. HOM05D005522 ORTHO05D007414 1.7e-35 154.1 137 60.6
Prupe.7G046600 Prunus persica HOM05D005522 ORTHO05D007414 1.5e-34 151.0 142 57.0
Psat6g119360 Pisum sativum HOM05D005522 ORTHO05D007414 3.4e-31 139.8 137 54.0
Zm00001eb368650 Zea mays HOM05D001023 ORTHO05D000912 9.8e-31 138.3 91 72.5
Oeu013025.1 Olea europaea HOM05D005522 ORTHO05D007414 1.1e-29 134.8 166 47.6
Oeu024729.2 Olea europaea HOM05D005522 ORTHO05D007414 1.3e-27 127.9 135 55.6
Medtr0506s0040 Medicago truncatula HOM05D005522 ORTHO05D007414 4.0e-24 116.3 71 76.1
SHI24612 Sapria himalayana HOM05D005522 ORTHO05D007414 8.9e-24 115.2 120 51.7
Cre13.g567100 Chlamydomonas reinhardtii HOM05D005522 ORTHO05D007414 6.0e-20 102.4 426 23.0
Sabra06G0029500 Salix brachista HOM05D005522 ORTHO05D007414 3.0e-19 100.1 103 52.4
BcaB01g00373 Brassica carinata HOM05D005522 ORTHO05D007414 7.1e-13 79.0 105 44.8
BolC3t18965H Brassica oleracea HOM05D005522 ORTHO05D040474 2.1e-09 67.4 143 37.1


User provided reference genes

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